Lcy12g018860 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g018860
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr12: 46193593 .. 46194357 (+)
RNA-Seq ExpressionLcy12g018860
SyntenyLcy12g018860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGCTGCCAATAGCTAATATAGATATCTTGTTCTACAGACAATCGGCACTCGATTTCATATTTAAAACACCAGAAATCGCGCAAACCGAAGCATTGATTTTTCAATCGCCATGGGGAATTCACATCCGGTCGAGTTCGATATCGAATTCCTTCAAACGACGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGCGTTCCGAAACTGCAATCGCTTTCGAGCCCTAGCGCAAGCTTGTGCGAGAGGTCGATGTTGAAATTGCCATCGCCGCCGTGCCGGTCGGAGAGTGCTAGGTTGCCGGGCGACTGCAGCGCGGCGATCCCCTATCATCCTCCGCGTTGCATGGCGGAGAGTGAGAGGATCGCTAAGGATTATCTGTGGCTTGAAGCTTGTTCCGGCGACTCTGCATCGTATTTCGGGTGCTGTAAATGGGATGGTTTGAAGGAGAGGGATCCTTTCGTTGAAGCCTACAAGAAATGTACCGACGGCCCGTCGATGAGCCGTCGGCCGATCAGTGGCGGTTCTGCTACAAGTGGTGTTAAACGTCCCAGTATCAGAAGAAGAGTTCTTTTTTCTCTCTCACGTAAGTGCTTTGTGCTACGATTCATTCGTACAAGTACTTTTTTTAATAAAATGTGATTCTTTGGTTTATATAATTTAGGTAATTACAAGTTAAAAGTTACTTTAACTTTTGTATGCTTTGAATTCGATTTTAAGGCCCCGTTTGTCTTTTGTTTTTTGTTTTTGAAAATTAAGTTTATA

mRNA sequence

GGAGCTGCCAATAGCTAATATAGATATCTTGTTCTACAGACAATCGGCACTCGATTTCATATTTAAAACACCAGAAATCGCGCAAACCGAAGCATTGATTTTTCAATCGCCATGGGGAATTCACATCCGGTCGAGTTCGATATCGAATTCCTTCAAACGACGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGCGTTCCGAAACTGCAATCGCTTTCGAGCCCTAGCGCAAGCTTGTGCGAGAGGTCGATGTTGAAATTGCCATCGCCGCCGTGCCGGTCGGAGAGTGCTAGGTTGCCGGGCGACTGCAGCGCGGCGATCCCCTATCATCCTCCGCGTTGCATGGCGGAGAGTGAGAGGATCGCTAAGGATTATCTGTGGCTTGAAGCTTGTTCCGGCGACTCTGCATCGTATTTCGGGTGCTGTAAATGGGATGGTTTGAAGGAGAGGGATCCTTTCGTTGAAGCCTACAAGAAATGTACCGACGGCCCGTCGATGAGCCGTCGGCCGATCAGTGGCGGTTCTGCTACAAGTGGTGTTAAACGTCCCAGTATCAGAAGAAGAGTTCTTTTTTCTCTCTCACGTAAGTGCTTTGTGCTACGATTCATTCGTACAAGTACTTTTTTTAATAAAATGTGATTCTTTGGTTTATATAATTTAGGTAATTACAAGTTAAAAGTTACTTTAACTTTTGTATGCTTTGAATTCGATTTTAAGGCCCCGTTTGTCTTTTGTTTTTTGTTTTTGAAAATTAAGTTTATA

Coding sequence (CDS)

ATGGGGAATTCACATCCGGTCGAGTTCGATATCGAATTCCTTCAAACGACGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGCGTTCCGAAACTGCAATCGCTTTCGAGCCCTAGCGCAAGCTTGTGCGAGAGGTCGATGTTGAAATTGCCATCGCCGCCGTGCCGGTCGGAGAGTGCTAGGTTGCCGGGCGACTGCAGCGCGGCGATCCCCTATCATCCTCCGCGTTGCATGGCGGAGAGTGAGAGGATCGCTAAGGATTATCTGTGGCTTGAAGCTTGTTCCGGCGACTCTGCATCGTATTTCGGGTGCTGTAAATGGGATGGTTTGAAGGAGAGGGATCCTTTCGTTGAAGCCTACAAGAAATGTACCGACGGCCCGTCGATGAGCCGTCGGCCGATCAGTGGCGGTTCTGCTACAAGTGGTGTTAAACGTCCCAGTATCAGAAGAAGAGTTCTTTTTTCTCTCTCACGTAAGTGCTTTGTGCTACGATTCATTCGTACAAGTACTTTTTTTAATAAAATGTGA

Protein sequence

MGNSHPVEFDIEFLQTTTNVPFSWEAKPGVPKLQSLSSPSASLCERSMLKLPSPPCRSESARLPGDCSAAIPYHPPRCMAESERIAKDYLWLEACSGDSASYFGCCKWDGLKERDPFVEAYKKCTDGPSMSRRPISGGSATSGVKRPSIRRRVLFSLSRKCFVLRFIRTSTFFNKM
Homology
BLAST of Lcy12g018860 vs. ExPASy TrEMBL
Match: A0A0A0KZZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644720 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 5.0e-51
Identity = 113/166 (68.07%), Postives = 124/166 (74.70%), Query Frame = 0

Query: 1   MGNSHPVEFDIEFLQTTTNVPFSWEAKPGVPKLQSLSSPSASL--CERSMLKLPSPPCRS 60
           M +S P+E D EFL T TNVPFSWEAKPGVPK QS  SP+ASL   E +MLKLPSPPCRS
Sbjct: 1   MASSRPIEIDFEFLPTKTNVPFSWEAKPGVPKPQSQPSPTASLFEIEATMLKLPSPPCRS 60

Query: 61  ESARLPGDCSAAIPYHPPRCMAESERIAKDYLWLEACSGDSASY--FGCCKWDGLKERDP 120
           ESARL GD S  I Y PPRC AES R+AKD+LWLEA S  SAS   FGCCK D  K+ DP
Sbjct: 61  ESARLSGDYSGLITYSPPRCRAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDP 120

Query: 121 FVEAYKKCTDGPSMSRRPISGGSATSGVKRPSIRRRVLFSLSRKCF 163
           FVEAYKKC +      R I+G SAT+G KRP+I RRVLFSLSRKCF
Sbjct: 121 FVEAYKKCRNS-----RSINGASATNGAKRPNIIRRVLFSLSRKCF 161

BLAST of Lcy12g018860 vs. ExPASy TrEMBL
Match: A0A5D3D9E3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002440 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.9e-50
Identity = 110/145 (75.86%), Postives = 117/145 (80.69%), Query Frame = 0

Query: 19  NVPFSWEAKPGVPKLQSLSSPSASLCERSMLKLPSPPCRSESARLPGDCSAAIPYHPPRC 78
           NVPFSWEAKPGVPK QS  SPSASL E SMLKLPSPPCRSESARL GD S  I Y PPRC
Sbjct: 2   NVPFSWEAKPGVPKPQSQPSPSASLFETSMLKLPSPPCRSESARLSGDYSGLITYSPPRC 61

Query: 79  MAESERIAKDYLWLEACSGDSASY--FGCCKWDGLKERDPFVEAYKKCTDGPSMSRRPIS 138
            AES R+AKD+LWLEA S  SAS   FGCCK D  K+ DPFVEAYKKCT+  SMS R I+
Sbjct: 62  RAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFVEAYKKCTNSRSMSGRGIT 121

Query: 139 GGSATSGVKRPSIRRRVLFSLSRKC 162
           GGSAT+GVKRP+I RRVLFSLSRKC
Sbjct: 122 GGSATNGVKRPNIIRRVLFSLSRKC 146

BLAST of Lcy12g018860 vs. ExPASy TrEMBL
Match: A0A067LAQ4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15992 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-07
Identity = 49/142 (34.51%), Postives = 70/142 (49.30%), Query Frame = 0

Query: 19  NVPFSWEAKPGVPKLQSLSSPSASLCERSMLKLPSPPCRSESARLPGDCSAAIPYHPPRC 78
           NVPFSWE KPGV K+ ++ + +    ++ ++KLP PPC  ES R+      +IP  P   
Sbjct: 12  NVPFSWEKKPGVSKVNAMINNNQEQ-DQIVVKLPPPPCPIESPRVSAH-EISIPLPP--- 71

Query: 79  MAESERIAKDYLWLEACSGDSASYFGCCKWDGLKERDPFVEAYKKCTDGPSMSRRPISGG 138
                           C+    S     KWD     DPF+ AYK+CT   + S+  ++GG
Sbjct: 72  ----------------CTFQPPSRSSSRKWD-----DPFLAAYKECTKSSTRSKAKVAGG 124

Query: 139 SATSGVKRPSIRRRVLFSLSRK 161
           SA  G  R  +R+  +F LS K
Sbjct: 132 SA--GFSRSGLRKG-MFKLSCK 124

BLAST of Lcy12g018860 vs. ExPASy TrEMBL
Match: K7MNJ6 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G232800 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.4e-05
Identity = 41/119 (34.45%), Postives = 56/119 (47.06%), Query Frame = 0

Query: 10  DIEFLQTTTNVPFSWEAKPGVPKLQSLSSPSASLCERSMLKLPSPPCRSESARLPGDCSA 69
           D+  ++T  NVPFSWE KPG+ K+ +    + +    SM+  P PPC S S+    D   
Sbjct: 8   DVHCVETIVNVPFSWEHKPGLSKVTTHGHHNGT----SMVLQP-PPCSSSSSGSGSD--- 67

Query: 70  AIPYHPPRCMAESERIAKDYLWLEACSGDSASYFGCCKWDGLKERDPFVEAYKKCTDGP 129
               H  +   ES+ +      L   S          + +  KE DPFVEAYKKCT  P
Sbjct: 68  ----HKHKVEEESQILRAVQTSLRISS---------FRMESQKEEDPFVEAYKKCTRSP 105

BLAST of Lcy12g018860 vs. ExPASy TrEMBL
Match: A0A2K1XNQ3 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G012900 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 45/143 (31.47%), Postives = 59/143 (41.26%), Query Frame = 0

Query: 14  LQTTTNVPFSWEAKPGVPKLQSLSSPSASLCERSMLKL----PSPPCRSESARLPGDCSA 73
           +Q+  NVPFSWE KPGV K+         +     LKL    P PPC S+S + P D S 
Sbjct: 7   VQSKVNVPFSWEQKPGVSKVTRQEVRPEDIW-HFRLKLPPPPPPPPCASKSTKFPSDYSL 66

Query: 74  AIPYHPPRCMAESERIAKDYLWLEACSGDSASYFGCCKWDGLKERDPFVEAYKKCTDGPS 133
            +P  P     +  RI                           + DPF+ AYKKC   P 
Sbjct: 67  QVPSTPSSSFKKGTRI---------------------------QEDPFLRAYKKCIGSP- 118

Query: 134 MSRRPISGGSATSGVKRPSIRRR 153
           ++ +  S G    G  RP I R+
Sbjct: 127 INGKLTSDGKTDHG--RPKIVRK 118

BLAST of Lcy12g018860 vs. NCBI nr
Match: KAG6608406.1 (hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-55
Identity = 117/161 (72.67%), Postives = 131/161 (81.37%), Query Frame = 0

Query: 3   NSHPVEFDIEFLQTTTNVPFSWEAKPGVPKLQSLSSPSASLCERSMLKLPSPPCRSESAR 62
           +SHP++FD E LQT TNVPFSWEAKPGVPKLQS SSP+ S  ERS LKLPSPP RSESAR
Sbjct: 7   SSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFERSALKLPSPPYRSESAR 66

Query: 63  LPGDCSAAIPYHPPRCMAESERIAKDYLWLEACSGD--SASYFGCCKWDGLKERDPFVEA 122
           LP D   AIP   PR  A+S R+AK++LWL+A S D  S+  FGCCK DGLKE DPFVEA
Sbjct: 67  LPDDYGEAIPCSSPR--AKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFVEA 126

Query: 123 YKKCTDGPSMSRRPISGGSATSGVKRPSIRRRVLFSLSRKC 162
           YKKCT+GPS +RRPI GGSAT+GVKRP IRRR+LFSLSRKC
Sbjct: 127 YKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKC 165

BLAST of Lcy12g018860 vs. NCBI nr
Match: KAG7037747.1 (hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-54
Identity = 116/161 (72.05%), Postives = 130/161 (80.75%), Query Frame = 0

Query: 3   NSHPVEFDIEFLQTTTNVPFSWEAKPGVPKLQSLSSPSASLCERSMLKLPSPPCRSESAR 62
           +SHP++FD E LQT TNVPFSWEAKPGVPKLQS SSP+ S  E S LKLPSPP RSESAR
Sbjct: 7   SSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPYRSESAR 66

Query: 63  LPGDCSAAIPYHPPRCMAESERIAKDYLWLEACSGD--SASYFGCCKWDGLKERDPFVEA 122
           LP D   AIP   PR  A+S R+AK++LWL+A S D  S+  FGCCK DGLKE DPFVEA
Sbjct: 67  LPDDYGEAIPCSSPR--AKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFVEA 126

Query: 123 YKKCTDGPSMSRRPISGGSATSGVKRPSIRRRVLFSLSRKC 162
           YKKCT+GPS +RRPI GGSAT+GVKRP IRRR+LFSLSRKC
Sbjct: 127 YKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKC 165

BLAST of Lcy12g018860 vs. NCBI nr
Match: KAA0064469.1 (hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK20119.1 hypothetical protein E5676_scaffold134G002440 [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 3.9e-50
Identity = 110/145 (75.86%), Postives = 117/145 (80.69%), Query Frame = 0

Query: 19  NVPFSWEAKPGVPKLQSLSSPSASLCERSMLKLPSPPCRSESARLPGDCSAAIPYHPPRC 78
           NVPFSWEAKPGVPK QS  SPSASL E SMLKLPSPPCRSESARL GD S  I Y PPRC
Sbjct: 2   NVPFSWEAKPGVPKPQSQPSPSASLFETSMLKLPSPPCRSESARLSGDYSGLITYSPPRC 61

Query: 79  MAESERIAKDYLWLEACSGDSASY--FGCCKWDGLKERDPFVEAYKKCTDGPSMSRRPIS 138
            AES R+AKD+LWLEA S  SAS   FGCCK D  K+ DPFVEAYKKCT+  SMS R I+
Sbjct: 62  RAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFVEAYKKCTNSRSMSGRGIT 121

Query: 139 GGSATSGVKRPSIRRRVLFSLSRKC 162
           GGSAT+GVKRP+I RRVLFSLSRKC
Sbjct: 122 GGSATNGVKRPNIIRRVLFSLSRKC 146

BLAST of Lcy12g018860 vs. NCBI nr
Match: XP_004141298.1 (uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetical protein Csa_012140 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-48
Identity = 110/163 (67.48%), Postives = 121/163 (74.23%), Query Frame = 0

Query: 1   MGNSHPVEFDIEFLQTTTNVPFSWEAKPGVPKLQSLSSPSASL--CERSMLKLPSPPCRS 60
           M +S P+E D EFL T TNVPFSWEAKPGVPK QS  SP+ASL   E +MLKLPSPPCRS
Sbjct: 1   MASSRPIEIDFEFLPTKTNVPFSWEAKPGVPKPQSQPSPTASLFEIEATMLKLPSPPCRS 60

Query: 61  ESARLPGDCSAAIPYHPPRCMAESERIAKDYLWLEACSGDSASY--FGCCKWDGLKERDP 120
           ESARL GD S  I Y PPRC AES R+AKD+LWLEA S  SAS   FGCCK D  K+ DP
Sbjct: 61  ESARLSGDYSGLITYSPPRCRAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDP 120

Query: 121 FVEAYKKCTDGPSMSRRPISGGSATSGVKRPSIRRRVLFSLSR 160
           FVEAYKKC +      R I+G SAT+G KRP+I RRVLFSLSR
Sbjct: 121 FVEAYKKCRNS-----RSINGASATNGAKRPNIIRRVLFSLSR 158

BLAST of Lcy12g018860 vs. NCBI nr
Match: KDP41585.1 (hypothetical protein JCGZ_15992 [Jatropha curcas])

HSP 1 Score: 64.7 bits (156), Expect = 9.1e-07
Identity = 49/142 (34.51%), Postives = 70/142 (49.30%), Query Frame = 0

Query: 19  NVPFSWEAKPGVPKLQSLSSPSASLCERSMLKLPSPPCRSESARLPGDCSAAIPYHPPRC 78
           NVPFSWE KPGV K+ ++ + +    ++ ++KLP PPC  ES R+      +IP  P   
Sbjct: 12  NVPFSWEKKPGVSKVNAMINNNQEQ-DQIVVKLPPPPCPIESPRVSAH-EISIPLPP--- 71

Query: 79  MAESERIAKDYLWLEACSGDSASYFGCCKWDGLKERDPFVEAYKKCTDGPSMSRRPISGG 138
                           C+    S     KWD     DPF+ AYK+CT   + S+  ++GG
Sbjct: 72  ----------------CTFQPPSRSSSRKWD-----DPFLAAYKECTKSSTRSKAKVAGG 124

Query: 139 SATSGVKRPSIRRRVLFSLSRK 161
           SA  G  R  +R+  +F LS K
Sbjct: 132 SA--GFSRSGLRKG-MFKLSCK 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZZ95.0e-5168.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644720 PE=4 SV=1[more]
A0A5D3D9E31.9e-5075.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A067LAQ44.4e-0734.51Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15992 PE=4 SV=1[more]
K7MNJ65.4e-0534.45Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G232800 PE=4 SV=1[more]
A0A2K1XNQ31.6e-0431.47Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G012900 PE=4 ... [more]
Match NameE-valueIdentityDescription
KAG6608406.11.4e-5572.67hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7037747.11.2e-5472.05hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0064469.13.9e-5075.86hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK201... [more]
XP_004141298.11.6e-4867.48uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetica... [more]
KDP41585.19.1e-0734.51hypothetical protein JCGZ_15992 [Jatropha curcas][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33696:SF12BNAA08G25910D PROTEINcoord: 13..172
NoneNo IPR availablePANTHERPTHR33696T22J18.15-RELATEDcoord: 13..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g018860.1Lcy12g018860.1mRNA