Lcy12g018560 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g018560
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein conserved in the green lineage and diatoms 27, chloroplastic
Location	Chr12: 45971887 .. 45973477 (+)
RNA-Seq Expression	Lcy12g018560
Synteny	Lcy12g018560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTATTGGGATTATTTGGCATATTTAGCCTGAAAATGTTTTAGTCCAAGAAACGAACCAATTACATCACCGTATTTCCATTTCAATAAAATGAAAGGAGAAATAAAGGATTTTTAATAACATGAAAATAAAAATCTAATTTGGATAGAGGAATTGGCAACCAGAAACAGAAGAATAACCGTTGGCCGGTCGTCGGAAGCACACTTATGGCCGGAGTCATGTACATACTCCCGGGAAAAGCTCCGCCGCGGACTTCCTTTCCCTCCGCCCCAAATTCCCGGCCACTAATTTCACCGTTCACGAACCCTAGACCTCTCCACCTCCGAAATTCCATTTCAAGAATATCCCTCTCCTTCTCCTTCCGAAAAGGAAACAACATGCCACCGGAAACCGGCTGCCCCGTTCCGCCGGAACAGCAGCCGATTAACGAGTATCAGAATCTCTCCACCTCTTTCCCTTTCTCCTGGGCCGCCGGAGACATCGTTGAGTACTGTTCTCGATTGGTCGCCACCGGCGTTTCCTTCGCTCTCTTCATCGGACTTCCGGTTGCTTGGTTCGGCACCGTGGGGGTCGAATCGGATCCCTTGAAACGATCTCTTTGCGCCGTTTCGAGTGGAATTTTGTTCGTCACTATTGCGGTTTTGAGGATGTATCTCGGTTGGGCTTACGTCGGTAACCGTCTCCTCAGTGCGACTGTCGAATGTAAAACCCTCATTTCTCTGTTCTTTCTTTTCAAATAACCCTAAAATCGCACTTCTTCGTTCAAAGATTGTTCTAGATTCTTTTCAATTCTCATCATCGCTCTGAAATTCTCCTTTATCCAGATGAAGAGACCGGATGGTACGACGGCCAGGTACACTCAGACAGTTCTTCTTCTTCTTCTTCTCATAGGATCAAGGCTCCATTCCATACCTGAAATTAAGAGCTTATGTTTGCAGATTTGGGTAAAAACCGCTCAAGTTTTAGCCCGCGATCGTCTCCTAGGTTCCTACACTGTAAGCAACCGATTTTGTTTTTCGATTTCGACTCCATGAATTCGAGTTTCATCTGCGATTACATTACTTTCCCCTATGAACAGGTGAAGCCGGTGCTCAGTAGGCTAAAATACACGCTCGTAAGCCTTGCGGCGTCTCTGTTTGTATCCATTGTTGTGCTCATCAACATTGATGGAGGCCAATTGCTGGGGCCTTTCTTCACCGGAAAATCTGCAGCAGATGACGGCGGCGGCAGAGTCATTCCCGGCGTTTATAGCGACGAATCCGCCAGATCTTTCGAGCCTGATGCGTTCTGTGGGCCTGGAGAACCCGATCTTCTTCAATGACATCCATTCTGGTAACCGTTGATTAATCTTTTTCTTTGTGAATGTTTTATTTTTTTTTTAACCATTATCTTGTTTTTTCTTCTTTTATATTTTTATACGCATAAGCATTATGCATTGTAAATTTGTCTTTGGAAATTAATTTATATTGTCGCCGGACCAAAAAAAAAAAAAAAAAATTATACTACAATCAGGTATACTACAAGTCAACTCAATTGACATAAAACTTAGTACTAATTTAGTACTAATGATAAAAAAGTATACTCATATAA

mRNA sequence

ATTTTATTGGGATTATTTGGCATATTTAGCCTGAAAATGTTTTAGTCCAAGAAACGAACCAATTACATCACCGTATTTCCATTTCAATAAAATGAAAGGAGAAATAAAGGATTTTTAATAACATGAAAATAAAAATCTAATTTGGATAGAGGAATTGGCAACCAGAAACAGAAGAATAACCGTTGGCCGGTCGTCGGAAGCACACTTATGGCCGGAGTCATGTACATACTCCCGGGAAAAGCTCCGCCGCGGACTTCCTTTCCCTCCGCCCCAAATTCCCGGCCACTAATTTCACCGTTCACGAACCCTAGACCTCTCCACCTCCGAAATTCCATTTCAAGAATATCCCTCTCCTTCTCCTTCCGAAAAGGAAACAACATGCCACCGGAAACCGGCTGCCCCGTTCCGCCGGAACAGCAGCCGATTAACGAGTATCAGAATCTCTCCACCTCTTTCCCTTTCTCCTGGGCCGCCGGAGACATCGTTGAGTACTGTTCTCGATTGGTCGCCACCGGCGTTTCCTTCGCTCTCTTCATCGGACTTCCGGTTGCTTGGTTCGGCACCGTGGGGGTCGAATCGGATCCCTTGAAACGATCTCTTTGCGCCGTTTCGAGTGGAATTTTGTTCGTCACTATTGCGGTTTTGAGGATGTATCTCGGTTGGGCTTACGTCGGTAACCGTCTCCTCAGTGCGACTGTCGAATATGAAGAGACCGGATGGTACGACGGCCAGATTTGGGTAAAAACCGCTCAAGTTTTAGCCCGCGATCGTCTCCTAGGTTCCTACACTGTGAAGCCGGTGCTCAGTAGGCTAAAATACACGCTCGTAAGCCTTGCGGCGTCTCTGTTTGTATCCATTGTTGTGCTCATCAACATTGATGGAGGCCAATTGCTGGGGCCTTTCTTCACCGGAAAATCTGCAGCAGATGACGGCGGCGGCAGAGTCATTCCCGGCGTTTATAGCGACGAATCCGCCAGATCTTTCGAGCCTGATGCGTTCTGTGGGCCTGGAGAACCCGATCTTCTTCAATGACATCCATTCTGGTAACCGTTGATTAATCTTTTTCTTTGTGAATGTTTTATTTTTTTTTTAACCATTATCTTGTTTTTTCTTCTTTTATATTTTTATACGCATAAGCATTATGCATTGTAAATTTGTCTTTGGAAATTAATTTATATTGTCGCCGGACCAAAAAAAAAAAAAAAAAATTATACTACAATCAGGTATACTACAAGTCAACTCAATTGACATAAAACTTAGTACTAATTTAGTACTAATGATAAAAAAGTATACTCATATAA

Coding sequence (CDS)

ATGGCCGGAGTCATGTACATACTCCCGGGAAAAGCTCCGCCGCGGACTTCCTTTCCCTCCGCCCCAAATTCCCGGCCACTAATTTCACCGTTCACGAACCCTAGACCTCTCCACCTCCGAAATTCCATTTCAAGAATATCCCTCTCCTTCTCCTTCCGAAAAGGAAACAACATGCCACCGGAAACCGGCTGCCCCGTTCCGCCGGAACAGCAGCCGATTAACGAGTATCAGAATCTCTCCACCTCTTTCCCTTTCTCCTGGGCCGCCGGAGACATCGTTGAGTACTGTTCTCGATTGGTCGCCACCGGCGTTTCCTTCGCTCTCTTCATCGGACTTCCGGTTGCTTGGTTCGGCACCGTGGGGGTCGAATCGGATCCCTTGAAACGATCTCTTTGCGCCGTTTCGAGTGGAATTTTGTTCGTCACTATTGCGGTTTTGAGGATGTATCTCGGTTGGGCTTACGTCGGTAACCGTCTCCTCAGTGCGACTGTCGAATATGAAGAGACCGGATGGTACGACGGCCAGATTTGGGTAAAAACCGCTCAAGTTTTAGCCCGCGATCGTCTCCTAGGTTCCTACACTGTGAAGCCGGTGCTCAGTAGGCTAAAATACACGCTCGTAAGCCTTGCGGCGTCTCTGTTTGTATCCATTGTTGTGCTCATCAACATTGATGGAGGCCAATTGCTGGGGCCTTTCTTCACCGGAAAATCTGCAGCAGATGACGGCGGCGGCAGAGTCATTCCCGGCGTTTATAGCGACGAATCCGCCAGATCTTTCGAGCCTGATGCGTTCTGTGGGCCTGGAGAACCCGATCTTCTTCAATGA

Protein sequence

MAGVMYILPGKAPPRTSFPSAPNSRPLISPFTNPRPLHLRNSISRISLSFSFRKGNNMPPETGCPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTVGVESDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLINIDGGQLLGPFFTGKSAADDGGGRVIPGVYSDESARSFEPDAFCGPGEPDLLQ

Homology

[Close]

BLAST of Lcy12g018560 vs. ExPASy Swiss-Prot
Match: Q9FN15 (Protein CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CGLD27 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.4e-33
Identity = 77/175 (44.00%), Postives = 108/175 (61.71%), Query Frame = 0


Query: 47  SLSFSFRKGNNMPPETGCPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSF 106
           S+SFS   G +  P +   VP +Q+P+NEY +L     +SW      E+  RL    +  
Sbjct: 70  SMSFS---GQSWDPSSEIEVPSDQRPVNEYSSLKEGMLYSWGELGPSEFFIRLGGLWLVT 129

Query: 107 ALFIGLPVAWFGTVGVESDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEY 166
              +G+PVA   +     +PL+  L A +  +  V++ VLR+YLGW+YVG+RLLSA + Y
Sbjct: 130 FTVLGVPVA-AASFNPSREPLRFILAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPY 189

Query: 167 EETGWYDGQIWVKTAQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLI 222
           EE+GWYDGQ+WVK  +VLARDRLLGSY VKPV+  LK TL+   A L  + V+ +
Sbjct: 190 EESGWYDGQMWVKPPEVLARDRLLGSYKVKPVIKMLKQTLIGTGALLVSAFVLFV 240

[Close]

BLAST of Lcy12g018560 vs. ExPASy Swiss-Prot
Match: P48276 (Uncharacterized protein ycf36 OS=Cyanophora paradoxa OX=2762 GN=ycf36 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.3e-28
Identity = 65/145 (44.83%), Postives = 94/145 (64.83%), Query Frame = 0


Query: 62  TGCPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTVG 121
           T CP+P EQQP+NEYQ L+ S  F+W +  +  Y   L  T  S    +   + ++  + 
Sbjct: 3   TFCPIPTEQQPLNEYQILNNSVLFNWPSQKLKIYFFYLF-TIYSIGFLLTFLITFYNDLF 62

Query: 122 VESDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTA 181
           +   P+   +  +  G   + + +LR+YLGW+Y+  RLLSATV YEE+GWYDGQIWVK++
Sbjct: 63  I-VHPVNIFVHGIIGGNFVLILDLLRLYLGWSYICQRLLSATVSYEESGWYDGQIWVKSS 122

Query: 182 QVLARDRLLGSYTVKPVLSRLKYTL 207
           +VL +DRL+G Y V+PVL+RLK TL
Sbjct: 123 EVLIQDRLIGIYQVRPVLNRLKQTL 145

[Close]

BLAST of Lcy12g018560 vs. ExPASy Swiss-Prot
Match: P51273 (Uncharacterized protein ycf36 OS=Porphyra purpurea OX=2787 GN=ycf36 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-25
Identity = 62/147 (42.18%), Postives = 87/147 (59.18%), Query Frame = 0


Query: 64  CPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTVGVE 123
           CPVP EQQP+NEY +L  S+ F W       Y  ++  T ++   F+  PV       + 
Sbjct: 8   CPVPLEQQPVNEYNSLKNSWFFCWPTLSSHSYNKKITITLIA-TCFLVSPVL-LSIFPIA 67

Query: 124 SDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAQV 183
             PLK          L     ++R+YLGW+YV  RL+SATV YEE+GWYDGQIWVK +++
Sbjct: 68  KLPLKFFFSEFIISSLITCFILIRLYLGWSYVVKRLMSATVFYEESGWYDGQIWVKPSEI 127

Query: 184 LARDRLLGSYTVKPVLSRLKYTLVSLA 211
           L +DR +G Y V P+L+++K TL  L+
Sbjct: 128 LVKDRFIGLYEVFPLLNKIKNTLSCLS 152

[Close]

BLAST of Lcy12g018560 vs. ExPASy Swiss-Prot
Match: Q1XDL3 (Uncharacterized protein ycf36 OS=Pyropia yezoensis OX=2788 GN=ycf36 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-24
Identity = 65/160 (40.62%), Postives = 93/160 (58.13%), Query Frame = 0


Query: 62  TGCPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTVG 121
           T CPVP EQQP++EY +L  S+ F W       Y  ++    +   L +  P+       
Sbjct: 6   TQCPVPKEQQPVHEYTSLKNSWFFCWPTLSRRSYNKKITIALLLNCLLVS-PIL-LSIFP 65

Query: 122 VESDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTA 181
           +   PLK       +  L     ++R+YLGW+YV  RL+SATV YEE+GWYDGQIWVK +
Sbjct: 66  ITKLPLKFFFSEFITSSLMTGFILIRLYLGWSYVVKRLMSATVFYEESGWYDGQIWVKPS 125

Query: 182 QVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLI 222
           ++L +DR +G Y V P+L+++K TL  L  SL +S  VL+
Sbjct: 126 EILLKDRFIGLYEVFPLLNKIKNTLSFL--SLMISGPVLL 161

[Close]

BLAST of Lcy12g018560 vs. ExPASy Swiss-Prot
Match: O78501 (Uncharacterized protein ycf36 OS=Guillardia theta OX=55529 GN=ycf36 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 55/140 (39.29%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 64  CPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTVGVE 123
           CPVP  Q PINEY  L++++ FSWA      Y   L+   +   LF  + + +       
Sbjct: 3   CPVPENQLPINEYNKLTSAWDFSWACKIGKLYYKFLLKMQLCLFLFFCICLNFL------ 62

Query: 124 SDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAQV 183
               +  L ++    LF+ +  LR YLG+ Y+  RLL + + YEE+ WYDGQ+WVK    
Sbjct: 63  DSKYETGLYSLILSTLFICLICLRTYLGFRYIYVRLLKSALPYEESSWYDGQVWVKNINY 122

Query: 184 LARDRLLGSYTVKPVLSRLK 204
           L +DRL+  YTV P+LSRLK
Sbjct: 123 LIKDRLVADYTVLPILSRLK 136

[Close]

BLAST of Lcy12g018560 vs. ExPASy TrEMBL
Match: A0A6J1CQK2 (uncharacterized protein ycf36 OS=Momordica charantia OX=3673 GN=LOC111013808 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 6.4e-138
Identity = 247/269 (91.82%), Postives = 256/269 (95.17%), Query Frame = 0


Query: 1   MAGVMYILPGKAPPRTSFPSAPNSRPLISPFTNPRPLHLRNSISRISLSFSFRKGNNMPP 60
           MAGVMYI+P  APPR  FPSAPN RP+ISPF NPRPLHLRNS+SRISLSFSFRKGNNMPP
Sbjct: 1   MAGVMYIVPANAPPRAFFPSAPNFRPIISPFINPRPLHLRNSLSRISLSFSFRKGNNMPP 60

Query: 61  ETGCPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTV 120
           ETGCPVPPEQQPINEYQ LSTSFPFSWA+GDIVEYCSRLVATG SFALF+GLP+ WFGTV
Sbjct: 61  ETGCPVPPEQQPINEYQTLSTSFPFSWASGDIVEYCSRLVATGASFALFVGLPITWFGTV 120

Query: 121 GVESDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKT 180
           GVESDPLKRSLCAVSSGILFVTIAV+RMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKT
Sbjct: 121 GVESDPLKRSLCAVSSGILFVTIAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKT 180

Query: 181 AQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLINIDGGQLLGPFFTGKSAAD 240
           AQVLARDRLLGSYTVKPVL+RLKYTLV+LAASLFVSIVVLINIDGGQLLGP FTGKSA  
Sbjct: 181 AQVLARDRLLGSYTVKPVLNRLKYTLVTLAASLFVSIVVLINIDGGQLLGPLFTGKSAEV 240

Query: 241 DGGGRVIPGVYSDESARSFEPDAFCGPGE 270
           D GGRVIPGVYSDESARSFEPDAFCGPGE
Sbjct: 241 D-GGRVIPGVYSDESARSFEPDAFCGPGE 268

[Close]

BLAST of Lcy12g018560 vs. ExPASy TrEMBL
Match: A0A5D3D958 (DUF1230 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002200 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.3e-135
Identity = 245/269 (91.08%), Postives = 255/269 (94.80%), Query Frame = 0


Query: 5   MYILPGKAPPRTSFPSAPNSRPLISPFTNPRPLHLRNSISRISLSFSFRKGNNMPPETGC 64
           MYIL G APP T   SAPNSRPLI PFTN RPLHLRNS+SRISLSFSFRKG+N+PPETGC
Sbjct: 1   MYILLGTAPPPTFLLSAPNSRPLILPFTNTRPLHLRNSVSRISLSFSFRKGSNVPPETGC 60

Query: 65  PVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTVGVES 124
           PVPPEQ PINEYQ LSTSFPFSWAAGDIVEYCSRLVATG SFALFIGLPVAWFGTVGVES
Sbjct: 61  PVPPEQLPINEYQTLSTSFPFSWAAGDIVEYCSRLVATGASFALFIGLPVAWFGTVGVES 120

Query: 125 DPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAQVL 184
           DPLKR LCAVSSGILFVTIAV+RMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAQVL
Sbjct: 121 DPLKRFLCAVSSGILFVTIAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAQVL 180

Query: 185 ARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLINIDGGQLLGPFFTGKSAADDGGG 244
           ARDRLLGSYTVKPVL+RLKYTLVSLAASLFVSIVVLINIDGG+LLGPFFTGKSAA++ GG
Sbjct: 181 ARDRLLGSYTVKPVLNRLKYTLVSLAASLFVSIVVLINIDGGELLGPFFTGKSAANEDGG 240

Query: 245 RVIPGVYSDESARSFEPDAFCGPGEPDLL 274
           RV+PG+YSDESARSFEPDAFCGPGE DLL
Sbjct: 241 RVVPGIYSDESARSFEPDAFCGPGELDLL 269

[Close]

BLAST of Lcy12g018560 vs. ExPASy TrEMBL
Match: A0A1S3BTX6 (uncharacterized protein ycf36 OS=Cucumis melo OX=3656 GN=LOC103493654 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.3e-135
Identity = 245/269 (91.08%), Postives = 255/269 (94.80%), Query Frame = 0


Query: 5   MYILPGKAPPRTSFPSAPNSRPLISPFTNPRPLHLRNSISRISLSFSFRKGNNMPPETGC 64
           MYIL G APP T   SAPNSRPLI PFTN RPLHLRNS+SRISLSFSFRKG+N+PPETGC
Sbjct: 1   MYILLGTAPPPTFLLSAPNSRPLILPFTNTRPLHLRNSVSRISLSFSFRKGSNVPPETGC 60

Query: 65  PVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTVGVES 124
           PVPPEQ PINEYQ LSTSFPFSWAAGDIVEYCSRLVATG SFALFIGLPVAWFGTVGVES
Sbjct: 61  PVPPEQLPINEYQTLSTSFPFSWAAGDIVEYCSRLVATGASFALFIGLPVAWFGTVGVES 120

Query: 125 DPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAQVL 184
           DPLKR LCAVSSGILFVTIAV+RMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAQVL
Sbjct: 121 DPLKRFLCAVSSGILFVTIAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAQVL 180

Query: 185 ARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLINIDGGQLLGPFFTGKSAADDGGG 244
           ARDRLLGSYTVKPVL+RLKYTLVSLAASLFVSIVVLINIDGG+LLGPFFTGKSAA++ GG
Sbjct: 181 ARDRLLGSYTVKPVLNRLKYTLVSLAASLFVSIVVLINIDGGELLGPFFTGKSAANEDGG 240

Query: 245 RVIPGVYSDESARSFEPDAFCGPGEPDLL 274
           RV+PG+YSDESARSFEPDAFCGPGE DLL
Sbjct: 241 RVVPGIYSDESARSFEPDAFCGPGELDLL 269

[Close]

BLAST of Lcy12g018560 vs. ExPASy TrEMBL
Match: A0A0A0L3Z3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646010 PE=4 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 6.6e-135
Identity = 245/269 (91.08%), Postives = 253/269 (94.05%), Query Frame = 0


Query: 5   MYILPGKAPPRTSFPSAPNSRPLISPFTNPRPLHLRNSISRISLSFSFRKGNNMPPETGC 64
           MYILPG A P T   S PNSRPLISPFTN R LHLRNS+SR+ LSFSFRKG+N+PPETGC
Sbjct: 1   MYILPGSASPPTFLLSVPNSRPLISPFTNTRLLHLRNSVSRMPLSFSFRKGSNVPPETGC 60

Query: 65  PVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTVGVES 124
           PVPPEQ PINEYQ LS SFPFSWAAGDIVE+CSRLVATG SFALFIGLPVAWFGTVGVES
Sbjct: 61  PVPPEQLPINEYQTLSASFPFSWAAGDIVEFCSRLVATGASFALFIGLPVAWFGTVGVES 120

Query: 125 DPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAQVL 184
           DPLK SLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAQVL
Sbjct: 121 DPLKLSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAQVL 180

Query: 185 ARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLINIDGGQLLGPFFTGKSAADDGGG 244
           ARDRLLGSYTVKPVL+RLKYTLVSLAASLFVSIVVLINIDGG+LLGPFFTGKSAA+DGGG
Sbjct: 181 ARDRLLGSYTVKPVLNRLKYTLVSLAASLFVSIVVLINIDGGELLGPFFTGKSAANDGGG 240

Query: 245 RVIPGVYSDESARSFEPDAFCGPGEPDLL 274
           RVIPGVYSDESARSFEPDAFCGPGE DLL
Sbjct: 241 RVIPGVYSDESARSFEPDAFCGPGEHDLL 269

[Close]

BLAST of Lcy12g018560 vs. ExPASy TrEMBL
Match: A0A6J1FDI1 (uncharacterized protein ycf36 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443023 PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 5.6e-134
Identity = 243/268 (90.67%), Postives = 247/268 (92.16%), Query Frame = 0


Query: 5   MYILPGKAPPRTSFPSAPNSRPLISPFTNPRPLHLRNSISRISLSFSFRKGNNMPPETGC 64
           MYILPGK  P T FPSAPN RPLISPF NPRP HLRNS SRISLSFSFRKGNNMP +TGC
Sbjct: 1   MYILPGKPSPATFFPSAPNPRPLISPFKNPRPFHLRNSPSRISLSFSFRKGNNMPSDTGC 60

Query: 65  PVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTVGVES 124
           PVPPEQ PINEYQ LSTSFPFSWA GDIVEYCSRLVATG SFALFIGLPVAWFGTVGVES
Sbjct: 61  PVPPEQLPINEYQTLSTSFPFSWAVGDIVEYCSRLVATGASFALFIGLPVAWFGTVGVES 120

Query: 125 DPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAQVL 184
           DPL RSLCAVSSGILFVTIAV+RMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTA+VL
Sbjct: 121 DPLSRSLCAVSSGILFVTIAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVL 180

Query: 185 ARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLINIDGGQLLGPFFTGKSAADDGGG 244
           ARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSI+VLINIDG QLLGPFFTGK AADD   
Sbjct: 181 ARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIIVLINIDGSQLLGPFFTGKYAADDSSS 240

Query: 245 RVIPGVYSDESARSFEPDAFCGPGEPDL 273
           RVIPGVYSDESARSFEPDAFCG GE DL
Sbjct: 241 RVIPGVYSDESARSFEPDAFCGRGEDDL 268

[Close]

BLAST of Lcy12g018560 vs. NCBI nr
Match: XP_038898552.1 (uncharacterized protein ycf36 isoform X4 [Benincasa hispida])

HSP 1 Score: 510.4 bits (1313), Expect = 9.8e-141
Identity = 253/274 (92.34%), Postives = 259/274 (94.53%), Query Frame = 0


Query: 1   MAGVMYILPGKAPPRTSFPSAPNSRPLISPFTNPRPLHLRNSISRISLSFSFRKGNNMPP 60
           M GV+YILPGKAPPRT  PS PNSRP ISPF NP PLHLRNS+SRISLSFSFRKG+NMPP
Sbjct: 1   MTGVLYILPGKAPPRTFLPSGPNSRPSISPFKNPGPLHLRNSVSRISLSFSFRKGSNMPP 60

Query: 61  ETGCPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTV 120
           ETGCPVPPEQ PINEYQ LSTSFPFSWAAGDIVEYCSRLVATG SFALFIGLPVAWFGTV
Sbjct: 61  ETGCPVPPEQLPINEYQTLSTSFPFSWAAGDIVEYCSRLVATGASFALFIGLPVAWFGTV 120

Query: 121 GVESDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKT 180
           GVESDPLKR LCAVSSGILFVTIAV+RMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKT
Sbjct: 121 GVESDPLKRFLCAVSSGILFVTIAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKT 180

Query: 181 AQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLINIDGGQLLGPFFTGKSAAD 240
           AQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVL+NIDGGQLLGPFFTGK AAD
Sbjct: 181 AQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLVNIDGGQLLGPFFTGKYAAD 240

Query: 241 DGGGRVIPGVYSDESARSFEPDAFCGPGEPDLLQ 275
           DG GRVIPGVYSDESARSFEPDAFCG GE DL+Q
Sbjct: 241 DGSGRVIPGVYSDESARSFEPDAFCGAGEADLVQ 274

[Close]

BLAST of Lcy12g018560 vs. NCBI nr
Match: XP_038898550.1 (uncharacterized protein ycf36 isoform X2 [Benincasa hispida])

HSP 1 Score: 504.2 bits (1297), Expect = 7.0e-139
Identity = 253/279 (90.68%), Postives = 259/279 (92.83%), Query Frame = 0


Query: 1   MAGVMYILPGKAPPRTSFPSAPNSRPLISPFTNPRPLHLRNSISRISLSFSFRKGNNMPP 60
           M GV+YILPGKAPPRT  PS PNSRP ISPF NP PLHLRNS+SRISLSFSFRKG+NMPP
Sbjct: 1   MTGVLYILPGKAPPRTFLPSGPNSRPSISPFKNPGPLHLRNSVSRISLSFSFRKGSNMPP 60

Query: 61  ETGCPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTV 120
           ETGCPVPPEQ PINEYQ LSTSFPFSWAAGDIVEYCSRLVATG SFALFIGLPVAWFGTV
Sbjct: 61  ETGCPVPPEQLPINEYQTLSTSFPFSWAAGDIVEYCSRLVATGASFALFIGLPVAWFGTV 120

Query: 121 GVESDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEY-----EETGWYDGQ 180
           GVESDPLKR LCAVSSGILFVTIAV+RMYLGWAYVGNRLLSATVEY     EETGWYDGQ
Sbjct: 121 GVESDPLKRFLCAVSSGILFVTIAVVRMYLGWAYVGNRLLSATVEYFLYTDEETGWYDGQ 180

Query: 181 IWVKTAQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLINIDGGQLLGPFFTG 240
           IWVKTAQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVL+NIDGGQLLGPFFTG
Sbjct: 181 IWVKTAQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLVNIDGGQLLGPFFTG 240

Query: 241 KSAADDGGGRVIPGVYSDESARSFEPDAFCGPGEPDLLQ 275
           K AADDG GRVIPGVYSDESARSFEPDAFCG GE DL+Q
Sbjct: 241 KYAADDGSGRVIPGVYSDESARSFEPDAFCGAGEADLVQ 279

[Close]

BLAST of Lcy12g018560 vs. NCBI nr
Match: XP_038898551.1 (uncharacterized protein ycf36 isoform X3 [Benincasa hispida])

HSP 1 Score: 504.2 bits (1297), Expect = 7.0e-139
Identity = 253/279 (90.68%), Postives = 259/279 (92.83%), Query Frame = 0


Query: 1   MAGVMYILPGKAPPRTSFPSAPNSRPLISPFTNPRPLHLRNSISRISLSFSFRKGNNMPP 60
           M GV+YILPGKAPPRT  PS PNSRP ISPF NP PLHLRNS+SRISLSFSFRKG+NMPP
Sbjct: 1   MTGVLYILPGKAPPRTFLPSGPNSRPSISPFKNPGPLHLRNSVSRISLSFSFRKGSNMPP 60

Query: 61  ETGCPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTV 120
           ETGCPVPPEQ PINEYQ LSTSFPFSWAAGDIVEYCSRLVATG SFALFIGLPVAWFGTV
Sbjct: 61  ETGCPVPPEQLPINEYQTLSTSFPFSWAAGDIVEYCSRLVATGASFALFIGLPVAWFGTV 120

Query: 121 GVESDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDG-----Q 180
           GVESDPLKR LCAVSSGILFVTIAV+RMYLGWAYVGNRLLSATVEYEETGWYDG     Q
Sbjct: 121 GVESDPLKRFLCAVSSGILFVTIAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQSLCLQ 180

Query: 181 IWVKTAQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLINIDGGQLLGPFFTG 240
           IWVKTAQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVL+NIDGGQLLGPFFTG
Sbjct: 181 IWVKTAQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLVNIDGGQLLGPFFTG 240

Query: 241 KSAADDGGGRVIPGVYSDESARSFEPDAFCGPGEPDLLQ 275
           K AADDG GRVIPGVYSDESARSFEPDAFCG GE DL+Q
Sbjct: 241 KYAADDGSGRVIPGVYSDESARSFEPDAFCGAGEADLVQ 279

[Close]

BLAST of Lcy12g018560 vs. NCBI nr
Match: XP_022144055.1 (uncharacterized protein ycf36 [Momordica charantia] >XP_022144134.1 uncharacterized protein ycf36 [Momordica charantia])

HSP 1 Score: 500.0 bits (1286), Expect = 1.3e-137
Identity = 247/269 (91.82%), Postives = 256/269 (95.17%), Query Frame = 0


Query: 1   MAGVMYILPGKAPPRTSFPSAPNSRPLISPFTNPRPLHLRNSISRISLSFSFRKGNNMPP 60
           MAGVMYI+P  APPR  FPSAPN RP+ISPF NPRPLHLRNS+SRISLSFSFRKGNNMPP
Sbjct: 1   MAGVMYIVPANAPPRAFFPSAPNFRPIISPFINPRPLHLRNSLSRISLSFSFRKGNNMPP 60

Query: 61  ETGCPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTV 120
           ETGCPVPPEQQPINEYQ LSTSFPFSWA+GDIVEYCSRLVATG SFALF+GLP+ WFGTV
Sbjct: 61  ETGCPVPPEQQPINEYQTLSTSFPFSWASGDIVEYCSRLVATGASFALFVGLPITWFGTV 120

Query: 121 GVESDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKT 180
           GVESDPLKRSLCAVSSGILFVTIAV+RMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKT
Sbjct: 121 GVESDPLKRSLCAVSSGILFVTIAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKT 180

Query: 181 AQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLINIDGGQLLGPFFTGKSAAD 240
           AQVLARDRLLGSYTVKPVL+RLKYTLV+LAASLFVSIVVLINIDGGQLLGP FTGKSA  
Sbjct: 181 AQVLARDRLLGSYTVKPVLNRLKYTLVTLAASLFVSIVVLINIDGGQLLGPLFTGKSAEV 240

Query: 241 DGGGRVIPGVYSDESARSFEPDAFCGPGE 270
           D GGRVIPGVYSDESARSFEPDAFCGPGE
Sbjct: 241 D-GGRVIPGVYSDESARSFEPDAFCGPGE 268

[Close]

BLAST of Lcy12g018560 vs. NCBI nr
Match: XP_038898549.1 (uncharacterized protein ycf36 isoform X1 [Benincasa hispida])

HSP 1 Score: 498.0 bits (1281), Expect = 5.0e-137
Identity = 253/284 (89.08%), Postives = 259/284 (91.20%), Query Frame = 0


Query: 1   MAGVMYILPGKAPPRTSFPSAPNSRPLISPFTNPRPLHLRNSISRISLSFSFRKGNNMPP 60
           M GV+YILPGKAPPRT  PS PNSRP ISPF NP PLHLRNS+SRISLSFSFRKG+NMPP
Sbjct: 1   MTGVLYILPGKAPPRTFLPSGPNSRPSISPFKNPGPLHLRNSVSRISLSFSFRKGSNMPP 60

Query: 61  ETGCPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGTV 120
           ETGCPVPPEQ PINEYQ LSTSFPFSWAAGDIVEYCSRLVATG SFALFIGLPVAWFGTV
Sbjct: 61  ETGCPVPPEQLPINEYQTLSTSFPFSWAAGDIVEYCSRLVATGASFALFIGLPVAWFGTV 120

Query: 121 GVESDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEY-----EETGWYDG- 180
           GVESDPLKR LCAVSSGILFVTIAV+RMYLGWAYVGNRLLSATVEY     EETGWYDG 
Sbjct: 121 GVESDPLKRFLCAVSSGILFVTIAVVRMYLGWAYVGNRLLSATVEYFLYTDEETGWYDGQ 180

Query: 181 ----QIWVKTAQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLINIDGGQLLG 240
               QIWVKTAQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVL+NIDGGQLLG
Sbjct: 181 SLCLQIWVKTAQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLVNIDGGQLLG 240

Query: 241 PFFTGKSAADDGGGRVIPGVYSDESARSFEPDAFCGPGEPDLLQ 275
           PFFTGK AADDG GRVIPGVYSDESARSFEPDAFCG GE DL+Q
Sbjct: 241 PFFTGKYAADDGSGRVIPGVYSDESARSFEPDAFCGAGEADLVQ 284

[Close]

BLAST of Lcy12g018560 vs. TAIR 10
Match: AT5G11840.1 (Protein of unknown function (DUF1230) )

HSP 1 Score: 284.3 bits (726), Expect = 1.1e-76
Identity = 139/214 (64.95%), Postives = 170/214 (79.44%), Query Frame = 0


Query: 60  PETGCPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSFALFIGLPVAWFGT 119
           PET CPVPPEQQPINEYQ+LSTSFPFSWA+GD++EY +RL  TG SFA F+GLPV+WFG+
Sbjct: 57  PETDCPVPPEQQPINEYQSLSTSFPFSWASGDLIEYSTRLFLTGASFAFFVGLPVSWFGS 116

Query: 120 VGVESDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVK 179
           +G E +P+KR L A SSGI  VT+AV+RMYLGWAYVGNRLLSATVEYEETGWYDGQ+WVK
Sbjct: 117 IGPEYEPVKRILAASSSGIFVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQVWVK 176

Query: 180 TAQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLINIDGGQLLGPFFTGKSAA 239
           T +VLARDRLLGS++VKPVL+RLK TLV L     +S++++IN+    +   + T +   
Sbjct: 177 TPEVLARDRLLGSFSVKPVLARLKNTLVILG----LSLILVINLGDSPIATSYRTYRDPR 236

Query: 240 DDGGGRVIPGVYSDESARSFEPDAFCGPGEPDLL 274
            D     IPG Y+DE+AR+FEP+AFCG    DLL
Sbjct: 237 -DRSSLPIPGAYNDETARTFEPEAFCGEPSSDLL 265

[Close]

BLAST of Lcy12g018560 vs. TAIR 10
Match: AT5G67370.1 (Protein of unknown function (DUF1230) )

HSP 1 Score: 142.9 bits (359), Expect = 3.8e-34
Identity = 77/175 (44.00%), Postives = 108/175 (61.71%), Query Frame = 0


Query: 47  SLSFSFRKGNNMPPETGCPVPPEQQPINEYQNLSTSFPFSWAAGDIVEYCSRLVATGVSF 106
           S+SFS   G +  P +   VP +Q+P+NEY +L     +SW      E+  RL    +  
Sbjct: 70  SMSFS---GQSWDPSSEIEVPSDQRPVNEYSSLKEGMLYSWGELGPSEFFIRLGGLWLVT 129

Query: 107 ALFIGLPVAWFGTVGVESDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEY 166
              +G+PVA   +     +PL+  L A +  +  V++ VLR+YLGW+YVG+RLLSA + Y
Sbjct: 130 FTVLGVPVA-AASFNPSREPLRFILAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPY 189

Query: 167 EETGWYDGQIWVKTAQVLARDRLLGSYTVKPVLSRLKYTLVSLAASLFVSIVVLI 222
           EE+GWYDGQ+WVK  +VLARDRLLGSY VKPV+  LK TL+   A L  + V+ +
Sbjct: 190 EESGWYDGQMWVKPPEVLARDRLLGSYKVKPVIKMLKQTLIGTGALLVSAFVLFV 240

The following BLAST results are available for this feature:

BLAST of Lcy12g018560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FN15	5.4e-33	44.00	Protein CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27, chloroplastic OS=Arabidop...	[more]
P48276	2.3e-28	44.83	Uncharacterized protein ycf36 OS=Cyanophora paradoxa OX=2762 GN=ycf36 PE=3 SV=1	[more]
P51273	1.4e-25	42.18	Uncharacterized protein ycf36 OS=Porphyra purpurea OX=2787 GN=ycf36 PE=3 SV=1	[more]
Q1XDL3	2.1e-24	40.63	Uncharacterized protein ycf36 OS=Pyropia yezoensis OX=2788 GN=ycf36 PE=3 SV=1	[more]
O78501	2.1e-21	39.29	Uncharacterized protein ycf36 OS=Guillardia theta OX=55529 GN=ycf36 PE=3 SV=1	[more]

BLAST of Lcy12g018560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQK2	6.4e-138	91.82	uncharacterized protein ycf36 OS=Momordica charantia OX=3673 GN=LOC111013808 PE=...	[more]
A0A5D3D958	1.3e-135	91.08	DUF1230 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BTX6	1.3e-135	91.08	uncharacterized protein ycf36 OS=Cucumis melo OX=3656 GN=LOC103493654 PE=4 SV=1	[more]
A0A0A0L3Z3	6.6e-135	91.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646010 PE=4 SV=1	[more]
A0A6J1FDI1	5.6e-134	90.67	uncharacterized protein ycf36 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Lcy12g018560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898552.1	9.8e-141	92.34	uncharacterized protein ycf36 isoform X4 [Benincasa hispida]	[more]
XP_038898550.1	7.0e-139	90.68	uncharacterized protein ycf36 isoform X2 [Benincasa hispida]	[more]
XP_038898551.1	7.0e-139	90.68	uncharacterized protein ycf36 isoform X3 [Benincasa hispida]	[more]
XP_022144055.1	1.3e-137	91.82	uncharacterized protein ycf36 [Momordica charantia] >XP_022144134.1 uncharacteri...	[more]
XP_038898549.1	5.0e-137	89.08	uncharacterized protein ycf36 isoform X1 [Benincasa hispida]	[more]

BLAST of Lcy12g018560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11840.1	1.1e-76	64.95	Protein of unknown function (DUF1230)	[more]
AT5G67370.1	3.8e-34	44.00	Protein of unknown function (DUF1230)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009631	CGLD27-like	PFAM	PF06799	DUF1230	coord: 64..207 e-value: 3.8E-55 score: 185.9
IPR009631	CGLD27-like	PANTHER	PTHR34214	FAMILY NOT NAMED	coord: 19..271
None	No IPR available	PANTHER	PTHR34214:SF1	OS05G0539900 PROTEIN	coord: 19..271

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g018560.1	Lcy12g018560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009536	plastid