Lcy12g018360 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g018360
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	leucine-rich repeat extensin-like protein 1
Location	Chr12: 45817533 .. 45821417 (+)
RNA-Seq Expression	Lcy12g018360
Synteny	Lcy12g018360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTTCCAAGCCTTTGGGTTGTTGCATTTGCATTGGCTTTGTTTTCAGCAGCATCCGACGCCCAGACGGTCGTGCCCTCCACCGGACAACTCTGCATCAGCGATTGCTCCACGTGTCCGGTGATCTGTACGGCGCCGCCTCCTCCAGTCCTCTACTCGCCGCCGCCCTCTTACAGCAGTTACATTCCGCCACCGCCTCCGCCGGCGGAGCTTTTTGGTGGGTATATGGCGCCGCCGGAGATGACGTGGACGCCGCCGCCGGCTCCGCCGTCGTATTATTTCTGGGGTCCGCCACCACCGGTTCGGAATTATTTTATGGGCGCACAACCGTCAGGGCAGATGCCGCAGACGGCGGGGCCTCGGGATTATTCTTACCCTTACTACTATTTCTACAGTTCGAATTCGTGTTCCTTCTCTTCTATTTCTACAGTCGTTGTTTTGTTTGTGTGTTTGTTTCATTTTGTTTTCTGATGGCGTTGACAAGAAGCTGACGGATTGTTGTTGTTGTTCATGGTTAGTTTTTGAGAACGTAATGACTACTTTGTAAAAAATAATGTTTTCTTTTTTATTTGTTTGATTTGATCGTTTTAACGGATTAGGCTATGCTTAGCGGCAATTGCCATGTACCCTTGACTATGAGGTCAGAGGTTCGGATCCCCCACCCTCAAATGTTGATGTACTAAAAAAAACTCATGTTAACTTTATTTGCTCGATTTTAATTATTGTTCGTGACTTAAGATGAATGATGACTTCACCTTTTAAATGGGATGTGGAGATTCAAATTAACATTTTTTAGAGGGATCAAAGATGCCTTAACTTTCAAGCTAAACTCACATTGACAATTCGGTAAGTGTTATTGTTTTTTAGTTTCACAAATCACAGTGTTTAAATTGGAAATTCAAATTCTGACTTTTTAGTCAAAGATATGTATTAAACCAATTGTTGTTAGTGTTTGTTTAATAGAGAATTAAGAATATGGAATGAGACACATAATTTGTGTCAATGGACTTGTAAAGATGAGTGTAACTATTAGTTATTCAAAGGATTTTGTTGAAATTTTAGATATTTTCCAACACATGTAAAAAATGATTCGGAGTGCGTGTTATCGAGTGAAGTTTTTTACTAAACAAAACTATCATGATTAGCTTACCTAAGGTCCTAAACATAATTCAATTAGATAAGAGTAGCATCAAGATTAGGGGGCGTAATTAATGGATTTTGGGTTGGATTCTGGACGGGAGTAGCTATTGGAGGAGTCATCGACGTGCTTGGAGAGATGATGGGAGTGTGTTGCTTTTGAGATTAGGAGGAAGAACCTTCTTCAGTAGTCATTGTCAAGAAGAAAAAGATGAGGTAGGCTCTGATACCATAAACGGTATTTGGACAGAATAAGCAGAGAGAAATAATATTGTATATGATTGTATTGTCTGAAAATAACAATGAATACAATGCAACATAAATAGGAAAATAAAGGGACAGATGGAGCCATATAATAGGTAGATACAATAACAAACTATATGGCAAATAAATGGAGAAATTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGTAACCGTTGATCGGATCTTAATGAAATAATATTAATATATTTTTTCCATTAAATGTTATTAGTTATTTTATATTTGTCTTTACCTAAAATAACTCTAATCCAATAAACTAGACATCCTATGCTGTAATATGAGTCTTGAACTATATGTAGCGACATATGGGGATCACTGTTCAAGAAACAACCTAAAGGGTCTATAGCATAGGGATAAGACTGGGTGCCTTATCTTGGTGACACTATGGATACGATCCACTTTGTATTTGATACAAACGCTATGATCCAACGCGTTCGTGTAGGAGACATGCGAGTGGGGGTATCCTATGCAATGAGTTTGCATAAGACTGGACCGCGAAATAGTAACCACTTGTTATAACACTGTTAACTAGTTGGTTTTCTATTTCACTAGGACGACCTAGACAACTTGGTCTTAATCCTGAGTTGATTATGGACTCTTGCTCATGAGGGATTGTCATTTGATTTGTATGAGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGTTGGGAACATAATAGTACAAAATGGAATTCACTCATTCCCGACTTTAGGGAAGCAGATGAGTGTTCCCTTAAGTGGTGACTCCGAGTCTTGAACAAAGGGTCCTACCCTCTCAATGACACGAGAGGGTTTTCTGTTTGATGGTTAGACCACAAACAAGTTGTTCATTAGAGGAGAACGGGTACTTAAGGAAATAGAAGTAACCCAAGGGTAAAACGGTAATTTGACCCAGTTGGTGTTGCGAACACTCGTGAAGGACTAACTAGTCGATATTGGTTTATATACGTGGACACAGAAAATATGTATGCAGTGCGAAGAGTGCAACTGTGAGTCTATAGTGGAATGTACACACAGTTAATGAATATTGATTAATTTGGTTAATGAGTTTGACCAATTAATCTCACATAATTGGAGCTTCTGATCTGCAGGTCCATTAGGTCCAATTTGAGGCAACTAAGTAATAAATGTAAATTGAAAATGTTCAATTTACCAAGGGAAACAATATAATATATATTGATGTATTGAAAAATTAATATTTGAAATTCAAATATTAATATAAATTTGAGTCACATCCAATTTATGGAAGTTTGTAAGAGTTCAAATATGAATTAATTAATTTTAAGGCTTAAAATCTATTTGGGCAAATTAATTAATTCAAGGCCGAAAATTAAATATGTGATATTTAATTGGTGGTTAATTAATTAAAGAATTAATTAATCGGGAATTAATCAATTATGGACATAATTAATCACTTATGAAAGTGATTAATCATTTATGGAAATGATATAATCACTTATGGAAGTAATTAGTCATTTATGGAAAAGATTAATCAATTATGGAATTGATTGATCTTGGATTGATTAAATAAGGAATGAGATTGAATCAATTTTTGAAAAGATTGATTTAATTGAATATTTTATTCATGGCTACTATTCTATAAATAGAACACTAGACCTAATTGGTTTAGTAGCCCTCTTTAGACTCACAAGACAAGACCCTAGAATTCTCTCTAGCCTCTGCTCCCACAAGTCTTTTGCCTCCTAGACTTAGAGACATACCGGTGTAACATCTGTGGTTATTGTGTCTTTGTTTTCGTTCGTTGGAGCATCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGTTTGTAACGGTTCTTTCCAATTTCTTTAGAATAGCATGAAAATAAATTTATATTTAATTTTCAAGCATGTTTATAGCAATTTGCAGTAAAGCATGTTTAAAGTTTATTTTGCCTTTTCGGTATTTTAATGTTAATTAATATATGCTAATTACCGCTGAGCTATGCTCGCTTTGGCATTATAAGTTCAAGACTCTACTTAATCTGGTAAAAAAAGAGATGAATCTACTTTGTTGTCCACGTTAACATAATTCAATTAACACATAAAGCATGAATCATCGAATGAAAAATATGTCTTTACATTCGACTCTCCCATTTCACACATTAAAAAAAAAAAAGCCTTTACATTGCTTGAATTGCAATAATGATAATACATCTGTGTGGTTAACTCTTTATTTTTCTCTAACGTTTATCGACATTGCATGAGGAAAAACAAAATAAAAAACGAAGTATAGAAAAATATATTTCCAAACGTATTTAGAATTAAAAAAATATATATATACACAATTAACTTTAAAAATATACTTTTCAAAAAAAAAAAAAAAAACTTTAAAAATATAACCTTTTTTTTTTTTTTTTTTTTTTTTTAAATATGCATATATATACCCTGTAGCTCAGTGA

mRNA sequence

ATGTCGTTTCCAAGCCTTTGGGTTGTTGCATTTGCATTGGCTTTGTTTTCAGCAGCATCCGACGCCCAGACGGTCGTGCCCTCCACCGGACAACTCTGCATCAGCGATTGCTCCACGTGTCCGGTGATCTGTACGGCGCCGCCTCCTCCAGTCCTCTACTCGCCGCCGCCCTCTTACAGCAGTTACATTCCGCCACCGCCTCCGCCGGCGGAGCTTTTTGGTGGGTATATGGCGCCGCCGGAGATGACGTGGACGCCGCCGCCGGCTCCGCCGTCGTATTATTTCTGGGGTCCGCCACCACCGGTTCGGAATTATTTTATGGGCGCACAACCGTCAGGGCAGATGCCGCAGACGGCGGGGCCTCGGGATTATTCTTACCCTTACTACTATTTCTACACTCAGTGA

Coding sequence (CDS)

ATGTCGTTTCCAAGCCTTTGGGTTGTTGCATTTGCATTGGCTTTGTTTTCAGCAGCATCCGACGCCCAGACGGTCGTGCCCTCCACCGGACAACTCTGCATCAGCGATTGCTCCACGTGTCCGGTGATCTGTACGGCGCCGCCTCCTCCAGTCCTCTACTCGCCGCCGCCCTCTTACAGCAGTTACATTCCGCCACCGCCTCCGCCGGCGGAGCTTTTTGGTGGGTATATGGCGCCGCCGGAGATGACGTGGACGCCGCCGCCGGCTCCGCCGTCGTATTATTTCTGGGGTCCGCCACCACCGGTTCGGAATTATTTTATGGGCGCACAACCGTCAGGGCAGATGCCGCAGACGGCGGGGCCTCGGGATTATTCTTACCCTTACTACTATTTCTACACTCAGTGA

Protein sequence

MSFPSLWVVAFALALFSAASDAQTVVPSTGQLCISDCSTCPVICTAPPPPVLYSPPPSYSSYIPPPPPPAELFGGYMAPPEMTWTPPPAPPSYYFWGPPPPVRNYFMGAQPSGQMPQTAGPRDYSYPYYYFYTQ

Homology

[Close]

BLAST of Lcy12g018360 vs. ExPASy Swiss-Prot
Match: Q9T0K5 (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.4e-04
Identity = 31/81 (38.27%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 41  PVICTAPPPPVLYSPPPSYSSYIPPPPPPAELFGGYMAPPEMTWTPPPAPPSYYFWGPPP 100
           P   ++PPP  +YSPPP      PPPPPP   +     PP + ++ PP PP YY   PPP
Sbjct: 595 PTPVSSPPPTPVYSPPPPPPCIEPPPPPPCIEYSPPPPPPVVHYSSPPPPPVYYSSPPPP 654

Query: 101 PVRNYFMGAQPSGQMPQTAGP 122
           PV  Y+    P   +  ++ P
Sbjct: 655 PV--YYSSPPPPPPVHYSSPP 673

[Close]

BLAST of Lcy12g018360 vs. ExPASy TrEMBL
Match: A0A0A0L054 (Microtubule associated protein (Ase1) OS=Cucumis sativus OX=3659 GN=Csa_4G646240 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.7e-36
Identity = 86/128 (67.19%), Postives = 95/128 (74.22%), Query Frame = 0


Query: 6   LWVVAFALALFSAASDAQTVVPSTGQLCISDCSTCPVICTAPPPPVLYSPPPSYSSYIPP 65
           LW+VAF   LFSA+S AQ  VPSTGQLCISDCSTCPVICTAPPPP+         SYIPP
Sbjct: 53  LWIVAF--TLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL---------SYIPP 112

Query: 66  PPPPAELFGGYMAPPEMTWTPPPAPPSYYFWGPPPPVRNYFMGAQPSGQMPQTAGPRDYS 125
           PPP    +GG+          PPA PSYY WGPPPPV NYF+GA+PSG+MPQT GPRDYS
Sbjct: 113 PPP--NFYGGFN-------MAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYS 160

Query: 126 YPYYYFYT 134
           YPYYYFY+
Sbjct: 173 YPYYYFYS 160

[Close]

BLAST of Lcy12g018360 vs. ExPASy TrEMBL
Match: A0A6J1IUS7 (leucine-rich repeat extensin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111480787 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.2e-30
Identity = 83/130 (63.85%), Postives = 88/130 (67.69%), Query Frame = 0


Query: 5   SLWVVAFALALFSAASDAQTVVPSTGQLCISDCSTCPVICTAPPPPVLYSPPPSYSSYIP 64
           SL +   A ALF   SDAQ  VPST QLCIS C TCPV+CT P P      P SYSSYIP
Sbjct: 12  SLGLCVMAAALFLPPSDAQLPVPSTEQLCISQCVTCPVVCTTPTPT---PTPRSYSSYIP 71

Query: 65  -PPPPPAELFGGYMAPPEMTWTPPPAPPSYYFWGPPPPVRNYFMGAQPSGQMPQTAGPRD 124
            PPPPP   +GGYM P      PP    SY+F GPPPPV NY  GAQPSGQMPQT GPRD
Sbjct: 72  SPPPPPPAFYGGYMGP------PPALTSSYFFRGPPPPVANYVSGAQPSGQMPQTVGPRD 131

Query: 125 YSYPYYYFYT 134
           YSYPYYYFY+
Sbjct: 132 YSYPYYYFYS 132

[Close]

BLAST of Lcy12g018360 vs. ExPASy TrEMBL
Match: A0A6J1FKD3 (leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111446222 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 79/128 (61.72%), Postives = 86/128 (67.19%), Query Frame = 0


Query: 6   LWVVAFALALFSAASDAQTVVPSTGQLCISDCSTCPVICTAPPPPVLYSPPPSYSSYIPP 65
           LWV+  A ALF   SDAQ  VPSTGQLCIS C TCPV+CT P        P SY++YIPP
Sbjct: 15  LWVM--AAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTP-------TPRSYNTYIPP 74

Query: 66  PPPPAELFGGYMAPPEMTWTPPPAPPSYYFWGPPPPVRNYFMGAQPSGQMPQTAGPRDYS 125
           PPP    +GGYM P      PP    SY+  GP PPV NY  GAQPSGQMPQT GPRDYS
Sbjct: 75  PPP--AFYGGYMGP------PPALTSSYFLRGPSPPVANYVSGAQPSGQMPQTVGPRDYS 125

Query: 126 YPYYYFYT 134
           YPYYYFY+
Sbjct: 135 YPYYYFYS 125

[Close]

BLAST of Lcy12g018360 vs. ExPASy TrEMBL
Match: A0A6A1VUN3 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR4G020414 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.5e-20
Identity = 67/144 (46.53%), Postives = 80/144 (55.56%), Query Frame = 0


Query: 6   LWVVAFALALFSAASDAQTVVPSTGQLCISDCSTCPVICTAPPPPVL------------- 65
           +W+    +   +  S+ Q   PSTG LCISDC+TCPVIC+ PPPP+L             
Sbjct: 23  IWIPGLVIFAINVTSEDQIEGPSTGTLCISDCTTCPVICSPPPPPLLVPHPPPPPPVPSV 82

Query: 66  -YSPPPSYSSYIPPPPPPAELFGGYMAPPEMTWTPPPAPP----SYYFWGPPPPVRNYFM 125
            +SPP +YS++ PPPP    L   Y  PP +    PP PP    SY   GPPP    YF 
Sbjct: 83  HHSPPYAYSTHAPPPP----LLVPYPPPPPLLVPYPPPPPPKSTSYSSRGPPPAPFLYFS 142

Query: 126 GAQPSGQMPQTAGPRDYSYPYYYF 132
              PSGQ P TAGPRDY YPYYYF
Sbjct: 143 NMPPSGQTPPTAGPRDYPYPYYYF 162

[Close]

BLAST of Lcy12g018360 vs. ExPASy TrEMBL
Match: A0A2N9HA71 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39158 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.6e-17
Identity = 69/148 (46.62%), Postives = 81/148 (54.73%), Query Frame = 0


Query: 3   FPSLWVVAFALALFSAASDAQTVVPSTGQLCISDCSTCPVICTAPPP-PVLYSPP----- 62
           F  +W++   L L +  S+ Q   PS+G LCISDC+TCPVIC+ PPP    YSPP     
Sbjct: 17  FWRIWIMGL-LMLVNVTSEDQIGSPSSGSLCISDCATCPVICSPPPPLQESYSPPSPPVQ 76

Query: 63  ---PSYSSYIPPPPPPAELFGGYMAPPEMTWTPPPAPP----SYYFWGPPPPVRNYFMGA 122
              P  S Y  PPPPP+         P  + TPPPA P    SY  WG PPP   YF   
Sbjct: 77  HHSPPKSYYANPPPPPS---------PPSSLTPPPASPPKASSYSSWGTPPPPFMYFNNM 136

Query: 123 QPSG----QMPQTAGPRDYSYPYYYFYT 134
            PSG    +MP  AGP DY YPYYYFY+
Sbjct: 137 PPSGNINNRMPPMAGPHDYPYPYYYFYS 154

[Close]

BLAST of Lcy12g018360 vs. NCBI nr
Match: KAE8649911.1 (hypothetical protein Csa_012510 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 1.6e-35
Identity = 86/128 (67.19%), Postives = 95/128 (74.22%), Query Frame = 0


Query: 6   LWVVAFALALFSAASDAQTVVPSTGQLCISDCSTCPVICTAPPPPVLYSPPPSYSSYIPP 65
           LW+VAF   LFSA+S AQ  VPSTGQLCISDCSTCPVICTAPPPP+         SYIPP
Sbjct: 15  LWIVAF--TLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL---------SYIPP 74

Query: 66  PPPPAELFGGYMAPPEMTWTPPPAPPSYYFWGPPPPVRNYFMGAQPSGQMPQTAGPRDYS 125
           PPP    +GG+          PPA PSYY WGPPPPV NYF+GA+PSG+MPQT GPRDYS
Sbjct: 75  PPP--NFYGGFN-------MAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYS 122

Query: 126 YPYYYFYT 134
           YPYYYFY+
Sbjct: 135 YPYYYFYS 122

[Close]

BLAST of Lcy12g018360 vs. NCBI nr
Match: XP_023523402.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.3 bits (360), Expect = 1.5e-30
Identity = 78/122 (63.93%), Postives = 84/122 (68.85%), Query Frame = 0


Query: 12  ALALFSAASDAQTVVPSTGQLCISDCSTCPVICTAPPPPVLYSPPPSYSSYIPPPPPPAE 71
           A ALF   SDAQ  VPSTGQLCIS C TCPV+CT P        P SY++YIPPPPPP  
Sbjct: 2   AAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTP-------TPRSYNTYIPPPPPPPA 61

Query: 72  LFGGYMAPPEMTWTPPPAPPSYYFWGPPPPVRNYFMGAQPSGQMPQTAGPRDYSYPYYYF 131
            +GGYM P      PP    SY+  GPPPPV NY  GAQPSGQMPQT GPRDYSYPYYYF
Sbjct: 62  FYGGYMGP------PPALTSSYFLRGPPPPVANYVSGAQPSGQMPQTVGPRDYSYPYYYF 110

Query: 132 YT 134
           Y+
Sbjct: 122 YS 110

[Close]

BLAST of Lcy12g018360 vs. NCBI nr
Match: XP_022981722.1 (leucine-rich repeat extensin-like protein 1 [Cucurbita maxima])

HSP 1 Score: 141.7 bits (356), Expect = 4.5e-30
Identity = 83/130 (63.85%), Postives = 88/130 (67.69%), Query Frame = 0


Query: 5   SLWVVAFALALFSAASDAQTVVPSTGQLCISDCSTCPVICTAPPPPVLYSPPPSYSSYIP 64
           SL +   A ALF   SDAQ  VPST QLCIS C TCPV+CT P P      P SYSSYIP
Sbjct: 12  SLGLCVMAAALFLPPSDAQLPVPSTEQLCISQCVTCPVVCTTPTPT---PTPRSYSSYIP 71

Query: 65  -PPPPPAELFGGYMAPPEMTWTPPPAPPSYYFWGPPPPVRNYFMGAQPSGQMPQTAGPRD 124
            PPPPP   +GGYM P      PP    SY+F GPPPPV NY  GAQPSGQMPQT GPRD
Sbjct: 72  SPPPPPPAFYGGYMGP------PPALTSSYFFRGPPPPVANYVSGAQPSGQMPQTVGPRD 131

Query: 125 YSYPYYYFYT 134
           YSYPYYYFY+
Sbjct: 132 YSYPYYYFYS 132

[Close]

BLAST of Lcy12g018360 vs. NCBI nr
Match: KAG6608366.1 (Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.0 bits (349), Expect = 2.9e-29
Identity = 80/128 (62.50%), Postives = 87/128 (67.97%), Query Frame = 0


Query: 6   LWVVAFALALFSAASDAQTVVPSTGQLCISDCSTCPVICTAPPPPVLYSPPPSYSSYIPP 65
           LWV+  A ALF   SDAQ  VPSTGQLCIS C TCPV+CT P        P SY++YIPP
Sbjct: 15  LWVM--AAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTP-------TPRSYNTYIPP 74

Query: 66  PPPPAELFGGYMAPPEMTWTPPPAPPSYYFWGPPPPVRNYFMGAQPSGQMPQTAGPRDYS 125
           PPP    +GGYM P      PP    SY+  GPPPPV NY  GAQPSGQMPQT GPRDYS
Sbjct: 75  PPP--AFYGGYMGP------PPALTSSYFLRGPPPPVANYVSGAQPSGQMPQTVGPRDYS 125

Query: 126 YPYYYFYT 134
           YPYYYFY+
Sbjct: 135 YPYYYFYS 125

[Close]

BLAST of Lcy12g018360 vs. NCBI nr
Match: XP_022940707.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-28
Identity = 79/128 (61.72%), Postives = 86/128 (67.19%), Query Frame = 0


Query: 6   LWVVAFALALFSAASDAQTVVPSTGQLCISDCSTCPVICTAPPPPVLYSPPPSYSSYIPP 65
           LWV+  A ALF   SDAQ  VPSTGQLCIS C TCPV+CT P        P SY++YIPP
Sbjct: 15  LWVM--AAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTP-------TPRSYNTYIPP 74

Query: 66  PPPPAELFGGYMAPPEMTWTPPPAPPSYYFWGPPPPVRNYFMGAQPSGQMPQTAGPRDYS 125
           PPP    +GGYM P      PP    SY+  GP PPV NY  GAQPSGQMPQT GPRDYS
Sbjct: 75  PPP--AFYGGYMGP------PPALTSSYFLRGPSPPVANYVSGAQPSGQMPQTVGPRDYS 125

Query: 126 YPYYYFYT 134
           YPYYYFY+
Sbjct: 135 YPYYYFYS 125

[Close]

BLAST of Lcy12g018360 vs. TAIR 10
Match: AT5G11990.1 (proline-rich family protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-09
Identity = 58/147 (39.46%), Postives = 71/147 (48.30%), Query Frame = 0


Query: 8   VVAFALALFSAASDAQTVVPSTGQLCISDCSTCPVICTAPP--PPVLYSPPPS----YSS 67
           ++A  + +  A+S +      T  LCIS+CSTCP IC+ PP  P    SPPPS     SS
Sbjct: 7   IIALVMVMVVASSPSDQTNVLT-PLCISECSTCPTICSPPPSKPSPSMSPPPSPSLPLSS 66

Query: 68  YIPPPPP----PAELFGGYMAPPEMTWTPPPAPPSYYFWG--PPPPVRNYFMGAQPS--- 127
             PPPPP    P  L      PP +T   PP P  YYF    PPPP+     G+ PS   
Sbjct: 67  SPPPPPPHKHSPPPLSQSLSPPPLITVIHPPPPRFYYFESTPPPPPLSPDGKGSPPSVPS 126

Query: 128 ------GQMPQTAGPRDYSYPYYYFYT 134
                 GQ      P  Y +PY+YFYT
Sbjct: 127 SPPSPKGQSQGQQQP-PYPFPYFYFYT 151

[Close]

BLAST of Lcy12g018360 vs. TAIR 10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 45.8 bits (107), Expect = 3.1e-05
Identity = 31/81 (38.27%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 41  PVICTAPPPPVLYSPPPSYSSYIPPPPPPAELFGGYMAPPEMTWTPPPAPPSYYFWGPPP 100
           P   ++PPP  +YSPPP      PPPPPP   +     PP + ++ PP PP YY   PPP
Sbjct: 595 PTPVSSPPPTPVYSPPPPPPCIEPPPPPPCIEYSPPPPPPVVHYSSPPPPPVYYSSPPPP 654

Query: 101 PVRNYFMGAQPSGQMPQTAGP 122
           PV  Y+    P   +  ++ P
Sbjct: 655 PV--YYSSPPPPPPVHYSSPP 673

[Close]

BLAST of Lcy12g018360 vs. TAIR 10
Match: AT5G19810.1 (Proline-rich extensin-like family protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.9e-04
Identity = 39/100 (39.00%), Postives = 44/100 (44.00%), Query Frame = 0


Query: 41  PVICTAPPPPVLYSPPPSYSSYIPP-------PPPPAELFGGYMAPPEMTWTPPPAPP-- 100
           PV+ + PPPPVL SPPP   +  PP       PPPP  LF    +PP  T T PP PP  
Sbjct: 120 PVLLSPPPPPVLLSPPPPPVNLSPPPPPVLLSPPPPPVLF----SPPPPTVTRPPPPPTI 179

Query: 101 ------------SYYFWGPPPPVRNYFMGAQPSGQMPQTA 120
                       +YY   PPPP   Y     P    PQ A
Sbjct: 180 TRSPPPPRPQAAAYYKKTPPPPPYKYGRVYPPPPPPPQAA 215

The following BLAST results are available for this feature:

BLAST of Lcy12g018360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0K5	4.4e-04	38.27	Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]

BLAST of Lcy12g018360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L054	7.7e-36	67.19	Microtubule associated protein (Ase1) OS=Cucumis sativus OX=3659 GN=Csa_4G646240...	[more]
A0A6J1IUS7	2.2e-30	63.85	leucine-rich repeat extensin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FKD3	1.2e-28	61.72	leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6A1VUN3	4.5e-20	46.53	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR4G020414 PE=4 SV=1	[more]
A0A2N9HA71	3.6e-17	46.62	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39158 PE=4 SV=1	[more]

BLAST of Lcy12g018360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649911.1	1.6e-35	67.19	hypothetical protein Csa_012510 [Cucumis sativus]	[more]
XP_023523402.1	1.5e-30	63.93	leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022981722.1	4.5e-30	63.85	leucine-rich repeat extensin-like protein 1 [Cucurbita maxima]	[more]
KAG6608366.1	2.9e-29	62.50	Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma su...	[more]
XP_022940707.1	2.5e-28	61.72	leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]	[more]

BLAST of Lcy12g018360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11990.1	1.6e-09	39.46	proline-rich family protein	[more]
AT4G13340.1	3.1e-05	38.27	Leucine-rich repeat (LRR) family protein	[more]
AT5G19810.1	5.9e-04	39.00	Proline-rich extensin-like family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g018360.1	Lcy12g018360.1	mRNA