Lcy12g018330 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g018330
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNA-binding protein 2-like
Location	Chr12: 45796244 .. 45799681 (+)
RNA-Seq Expression	Lcy12g018330
Synteny	Lcy12g018330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTGTGGCTAATAGCAGAACTGGAGAAGAGAAGAGGCCGCGGGAGGTTCCAGTTGCAGCAGAAGCAGAGCAGACGATCAAGCCATGGGAGACGACGCTTATACCAGATACGCCGCCTCCGCCGATAGAGGTACTTTTCTCATCCTGAACCCTAGTTTAAGCGTTGAACGACCTCTTGTATTTCTTCAATCCACTCGATATCGGGACAAAATTGCATTGTTTAGAATCGGTGCCATATTTTGCCTTAGATGTCCACCGTCTGTACTGTTTTGGCCGGAAGAATATTGCATCGTGGAACGAAAATTAACTCAGTTGAACTGAATCACCCACACAAATTTAAGGAGAAGCTTGTGGCGAGTTGTATTTGTACTGAATGTAGGGGAAAAGTCATTTTACGAAGCTGAACTATCAGCTTTCTAGAAATTGATGCATCACAGGATATTTGGATGAGGTGCCATGGGGTTAATCATTTGAATTGCTGCTTTTACTGCTTGATGACCGTAGTATGTTATTTTGCTTGGAAAGTTTTTATGGATACCGTAGCATCAGGATCACCCTGTTGAATTGTTGTTATGAACCAATTGCAACGCTAGCTTACTCTCCGCTTTGTGTTGGCTCCCCGCTTTGTTTGAGATGCTGGCTTTTAGGAAGAACTATACTAATCCTCTGTTTCAACTTAGTCATTTTATAATGTTCCTTTCTTCACTGTCTTTTCATATCGACATGCAATTCTGTTTACATTGAAGAAAAGGACGGGAGAAGGGTCTCCCTTCTCCTTCAGCCAATATTTTACCAGTAGCACGTGAAGTGTAGAATACATGGTTGGTAGAGAATCTGTTGTGCAAACATCATACTTCAAACTGACATTCAATCGTTGGTTCTTGCAGCAGGAAGTGTAGCGAGGCCTGGCCTTTCACCCTACTCTGAAGCACCTCCTTTGACATCTTACCCCAATTCGACTTCCGTTGATCCATGGCACATCCCTCCTGATTATTTGCAGAAAGATGTAAGAATTTTATCTTAGTATAAAATAAATTTGTTTATGAGTGCTTTACTTGACTTGTAACTGCAGATAAATTCATCAGGACCTGGAGCTTATGGATATACTGACATAGGTGGCATTAGAAATTATCCAGAACCAGTTATTGGCGGTGTGACGTCTGGAGTGAGTGCAAAAGGCTACACATCTCCTTTTGTGGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGGCTGATGGGTATAGCGGACCCAGGTCACGGAAGAGCCAGTTCTCTTGGTCTCAGAAATGCTGAATTTGTTCCAATTTCAGCTCACGAATCAAACATTCTTTTCATTGATGGACTTCCTACAGATTGTACTAGAAGAGAAGTAGGCCGTATCCTTGCACTATATGTGCTTGCTTTTGTTACTATTTCTCCTGTCGTCCCAACTTTATCTACCTCCACTGCTTTAAGTTGCTTAGGGTGCCGGCAGCATCCCATATGATTTGTGCTTCAGTTGGAACTTAAAACAAGTATTTTTCTCAAAAAGAGAAACTTAAAACAAGTATTGTTGTTTTCTTTACGTCACTCTAGTCAAAGAAAATAGCTCATAAATTGCAATAGACAGAAATATTGTCATGTAGCCTTGTTTTGTCATGTCTTAACTTTGAGTTGAAGATATTTTCCGCCCCTTCGTTGGTTATAAAGATATCAGAGTTGTTCACAAGGAGCCCAGACGAGTAAGTTATCAGGTTCTATTTACTTTAAACTATGGAGGCATTTCTTTGCAAAATAAGATCACCTATTGCAATTAACAACTGTACGCACTCTATGGTGGAGGGCCTGTTTATAGTTATTGTTGCCTTATGCTCAGATCTAATGATGTTATTTTCTTCTGTTATTTGAGTTATGTTGTCAAATGTCAATAAATTCCTTTTATTAAAACGAACTGCAGAGTGGAGATAAAGCTACGGTATTATGCTTTGTAGAGTTCATTGAAGCAAGACACGCCCGTGCTGCAATGGAAGCTCTTCAAGGTATTGTGTAATGTATTCCTCTTTGTATGGGTGACAATCTAAGTCAAGACGCAAAGATAAATGCTTGAAGAGACTGAAAACGTGCAGCACTTTTTGGGGCTCCTTATTGTGTATTGCTTGGTACATAAAATTTGTGATCTAGTGTTTAGCCAAGTATATCTGGCACTATTATTGACGCCATTGACATTCTTTATGAACCAACATCCAGTCAATTCTTTAAATGAACTACGACAACTCTTAAAATGCTCCATATAACTTTAGATAATCAGATGCATGATTTTATGCAGGTTACAAGTTCGATGACAAAAAAACAGATTCCCCAGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCACTTACCATCTAACCACGATGATGGGCGATGAATGCATATCCAACTGGAACTACGTGGTCTGAAGGGAATGGCAGGTTTTTGTTTGGCACTTTCTTGATACAACTTATGAGTAAAGTAACCCTGTGTATCTATACATGGTTTCCTGTTTTTAGGTGCCTTGTGGGTCATGTGGAACATTATAAAGTTTATTCTGGGACAGAATGGAGAATTAAATGGTTTGAAGAAAGCATTTGGCAAAATGGTTGCTATCACCAATATCTGATACTACAACAGTTTTCATTTTTTCATGTGGGCCTAGATAAGCCCATACAATCAAATGGGCTTTTCCCAAATTCCTGTTTGGTATTGATACTGATCAGTGTCACATTTGTCACTTTTTGACTAACAAGTTGTAGTCAGATAGCTTCTTATTCTTGTTCTGCCTGTCAGGTTTCAGATGTCTCCAGCTTTGGATCATGAAAATGACATATAGGTACAAAGATTCCTGACGAAGGTAATAAACTTTCATATGAATGATGACTATTTTCCCATGAAACCAACCACCCCCACTGAATAAAAGAAAGCAGAGCAAAATATAAGCAACAAAGGAGAGGAGACTAGACAAATCGCTGTAGAGGTTGACAAAATGTTGTATTTCTGTTGAATTTTGCTATGTCTTAAGAATAGAGTTATGCAGAGAAAGGGAGGGGCAGGAGTCAAAGATTACATTTTCAAGCTTGTGGGGTTTGAAGCCATAAACAGCGAAGAGACCAATAAATCCCATTATTGACATTTTCTACTATAACGATCTAGTGGGGGCAGGGATGTGTTTAAGGCATTTTTTTAGAGATCGTTTTATATCATTATGTGCTAAATCTTTAAATTTATGTTTCTTCTTTTTAAAAAATCATTTTTTTTTAATAAAAATATGTTTAAAAGTTAAGTATACTAAAAAATAGTTTTCTTTTTTTTTGACAATATGTGGGGTAGGGAGATTTGAACCACAGATCTTGTGGTTATCTGTACAACTTTATGCCAGTTGAACTATATTGAAAATATATGGAAG

mRNA sequence

TAGTGTGGCTAATAGCAGAACTGGAGAAGAGAAGAGGCCGCGGGAGGTTCCAGTTGCAGCAGAAGCAGAGCAGACGATCAAGCCATGGGAGACGACGCTTATACCAGATACGCCGCCTCCGCCGATAGAGCAGGAAGTGTAGCGAGGCCTGGCCTTTCACCCTACTCTGAAGCACCTCCTTTGACATCTTACCCCAATTCGACTTCCGTTGATCCATGGCACATCCCTCCTGATTATTTGCAGAAAGATATAAATTCATCAGGACCTGGAGCTTATGGATATACTGACATAGGTGGCATTAGAAATTATCCAGAACCAGTTATTGGCGGTGTGACGTCTGGAGTGAGTGCAAAAGGCTACACATCTCCTTTTGTGGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGGCTGATGGGTATAGCGGACCCAGGTCACGGAAGAGCCAGTTCTCTTGGTCTCAGAAATGCTGAATTTGTTCCAATTTCAGCTCACGAATCAAACATTCTTTTCATTGATGGACTTCCTACAGATTGTACTAGAAGAGAAGTAGGCCATATTTTCCGCCCCTTCGTTGGTTATAAAGATATCAGAGTTGTTCACAAGGAGCCCAGACGAAGTGGAGATAAAGCTACGGTATTATGCTTTGTAGAGTTCATTGAAGCAAGACACGCCCGTGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAAACAGATTCCCCAGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCACTTACCATCTAACCACGATGATGGGCGATGAATGCATATCCAACTGGAACTACGTGGTCTGAAGGGAATGGCAGGTGCCTTGTGGGTCATGTGGAACATTATAAAGTTTATTCTGGGACAGAATGGAGAATTAAATGGTTTGAAGAAAGCATTTGGCAAAATGGTTGCTATCACCAATATCTGATACTACAACAGTTTTCATTTTTTCATGTGGGCCTAGATAAGCCCATACAATCAAATGGGCTTTTCCCAAATTCCTGTTTGGTTTCAGATGTCTCCAGCTTTGGATCATGAAAATGACATATAGGTACAAAGATTCCTGACGAAGGTAATAAACTTTCATATGAATGATGACTATTTTCCCATGAAACCAACCACCCCCACTGAATAAAAGAAAGCAGAGCAAAATATAAGCAACAAAGGAGAGGAGACTAGACAAATCGCTGTAGAGGTTGACAAAATGTTGTATTTCTGTTGAATTTTGCTATGTCTTAAGAATAGAGTTATGCAGAGAAAGGGAGGGGCAGGAGTCAAAGATTACATTTTCAAGCTTGTGGGGTTTGAAGCCATAAACAGCGAAGAGACCAATAAATCCCATTATTGACATTTTCTACTATAACGATCTAGTGGGGGCAGGGATGTGTTTAAGGCATTTTTTTAGAGATCGTTTTATATCATTATGTGCTAAATCTTTAAATTTATGTTTCTTCTTTTTAAAAAATCATTTTTTTTTAATAAAAATATGTTTAAAAGTTAAGTATACTAAAAAATAGTTTTCTTTTTTTTTGACAATATGTGGGGTAGGGAGATTTGAACCACAGATCTTGTGGTTATCTGTACAACTTTATGCCAGTTGAACTATATTGAAAATATATGGAAG

Coding sequence (CDS)

ATGGGAGACGACGCTTATACCAGATACGCCGCCTCCGCCGATAGAGCAGGAAGTGTAGCGAGGCCTGGCCTTTCACCCTACTCTGAAGCACCTCCTTTGACATCTTACCCCAATTCGACTTCCGTTGATCCATGGCACATCCCTCCTGATTATTTGCAGAAAGATATAAATTCATCAGGACCTGGAGCTTATGGATATACTGACATAGGTGGCATTAGAAATTATCCAGAACCAGTTATTGGCGGTGTGACGTCTGGAGTGAGTGCAAAAGGCTACACATCTCCTTTTGTGGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGGCTGATGGGTATAGCGGACCCAGGTCACGGAAGAGCCAGTTCTCTTGGTCTCAGAAATGCTGAATTTGTTCCAATTTCAGCTCACGAATCAAACATTCTTTTCATTGATGGACTTCCTACAGATTGTACTAGAAGAGAAGTAGGCCATATTTTCCGCCCCTTCGTTGGTTATAAAGATATCAGAGTTGTTCACAAGGAGCCCAGACGAAGTGGAGATAAAGCTACGGTATTATGCTTTGTAGAGTTCATTGAAGCAAGACACGCCCGTGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAAACAGATTCCCCAGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCACTTACCATCTAACCACGATGATGGGCGATGA

Protein sequence

MGDDAYTRYAASADRAGSVARPGLSPYSEAPPLTSYPNSTSVDPWHIPPDYLQKDINSSGPGAYGYTDIGGIRNYPEPVIGGVTSGVSAKGYTSPFVDSLASQRQDIAVGSSPGLMGIADPGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHKEPRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKTDSPALKIQFAHFPFHLPSNHDDGR

Homology

[Close]

BLAST of Lcy12g018330 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-22
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 0


Query: 120 DPGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHK 179
           D G G+  S+G    E  P+    SN L+++GLP++C+RREV HIFRPFVGY+++R+V +
Sbjct: 298 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 357

Query: 180 EPRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKTDSPALKIQFAHFPFHLPSNH 239
           + +      TVLCFV+F  +  A  A+ ALQ Y+ D+ + DS  L++QF   P   P   
Sbjct: 358 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQR 417

Query: 240 DDGR 244
              R
Sbjct: 418 GGRR 421

[Close]

BLAST of Lcy12g018330 vs. ExPASy Swiss-Prot
Match: Q8H0P8 (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-21
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 144 SNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHKEPRRSGDKATVLCFVEFIEARHAR 203
           S  L+I+GLP+DCTRREV HIFRPFVGY+++R+V KE +  GD   +LCFV+F     A 
Sbjct: 150 SPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHRGD-PLILCFVDFANPACAA 209

Query: 204 AAMEALQGYKFDDKKTDSPALKIQFAHFP 233
            A+ ALQGYK D+   +S  L++QF+ +P
Sbjct: 210 TALSALQGYKVDEINPESSHLRLQFSRYP 237

[Close]

BLAST of Lcy12g018330 vs. ExPASy Swiss-Prot
Match: G7ID19 (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-21
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 0


Query: 100 LASQRQDIAVGSSPGLMGIADPGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRR 159
           L+   +D+  G    +  ++ PG            E +P+    S+ L+++GLP+D T+R
Sbjct: 118 LSRNGRDVNFGGQLPIDAVSRPG-----------PETIPLPRDASSTLYVEGLPSDSTKR 177

Query: 160 EVGHIFRPFVGYKDIRVVHKEPRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKT 219
           EV HIFRPFVGY+++R+V KE +  G    +LCFV+F     A  A+ ALQGYK D+   
Sbjct: 178 EVAHIFRPFVGYREVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDEINP 237

Query: 220 DSPALKIQFAHFP 233
           +S  L++QF+  P
Sbjct: 238 ESSYLRLQFSRSP 239

[Close]

BLAST of Lcy12g018330 vs. ExPASy Swiss-Prot
Match: A1A6K6 (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.2e-21
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 144 SNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHKEPRRSGDKATVLCFVEFIEARHAR 203
           SN L+++GLP++C+RREV HIFRPFVGY+++R+V K+ +       VLCFV+F     A 
Sbjct: 135 SNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAA 194

Query: 204 AAMEALQGYKFDDKKTDSPALKIQFAHFPFHLP 237
            A+ ALQGY+ D+ ++DS  L++QF+  P   P
Sbjct: 195 TALSALQGYRMDENESDSKFLRLQFSRKPGSRP 227

[Close]

BLAST of Lcy12g018330 vs. ExPASy Swiss-Prot
Match: Q6JB11 (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-19
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 138 PISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHKEPRRSGDKATVLCFVEFI 197
           P+    S+ L+I+GLP +CTRREV HIFRPFVG++++R+V+KE R  G    VLCFV+F 
Sbjct: 31  PLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFD 90

Query: 198 EARHARAAMEALQGYKFDDKKTDSPA 224
               A  A+EALQG+  DD    +PA
Sbjct: 91  NPAQATIALEALQGHVTDDVNVSAPA 116

[Close]

BLAST of Lcy12g018330 vs. ExPASy TrEMBL
Match: A0A6J1J4R2 (RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111481239 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 4.2e-117
Identity = 208/243 (85.60%), Postives = 221/243 (90.95%), Query Frame = 0


Query: 1   MGDDAYTRYAASADRAGSVARPGLSPYSEAPPLTSYPNSTSVDPWHIPPDYLQKDINSSG 60
           MGDDAYTRYAAS DRAGSVAR GLS YSEAPPLTSYPNSTS+DPW IPPDYLQK+ +SSG
Sbjct: 1   MGDDAYTRYAASGDRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLQKETDSSG 60

Query: 61  PGAYGYTDIGGIRNYPEPVIGGVTSGVSAKGYTSPFVDSLASQRQDIAVGSSPGLMGIAD 120
           PG YGYTD+GGIRNYPEPVIGGVTSGVSA G TSPF D+ A QR DIAVGSSPGLM +AD
Sbjct: 61  PGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMAD 120

Query: 121 PGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHKE 180
            GH +A+SLGLRN E VPISAHESNILF+DGLPTDCTRREVGH+FRPF+GYKDIRVVHKE
Sbjct: 121 TGHEKANSLGLRNPERVPISAHESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 181 PRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKTDSPALKIQFAHFPFHLPSNHD 240
           PRR GDKATVLCFVEFIEAR++RAAMEALQGYKFDDKK DS ALKIQFAHFPF LPSNHD
Sbjct: 181 PRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSNHD 240

Query: 241 DGR 244
           D R
Sbjct: 241 DRR 243

[Close]

BLAST of Lcy12g018330 vs. ExPASy TrEMBL
Match: A0A6J1FN25 (RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111445759 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 6.8e-115
Identity = 206/243 (84.77%), Postives = 219/243 (90.12%), Query Frame = 0


Query: 1   MGDDAYTRYAASADRAGSVARPGLSPYSEAPPLTSYPNSTSVDPWHIPPDYLQKDINSSG 60
           MGDDAYTRYAASADRAGSVAR GLS YSEAPPLTSYPNSTS+DPW IPPDYL K+ +SSG
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKETDSSG 60

Query: 61  PGAYGYTDIGGIRNYPEPVIGGVTSGVSAKGYTSPFVDSLASQRQDIAVGSSPGLMGIAD 120
           PG YGYTD+GGIRNYPEPVIGGVTSGVSA G TSPF D+ A QR DIAVGSSPGLM +AD
Sbjct: 61  PGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMAD 120

Query: 121 PGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHKE 180
            GH +A+SLGLRN E VPISA ESNILF+DGLPTDCTRREVGH+FRPF+GYKDIRVVHKE
Sbjct: 121 TGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 181 PRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKTDSPALKIQFAHFPFHLPSNHD 240
           PRR GDKATVLCFVEFIEAR++RAAMEALQGYKFDDKK DS ALKIQFAHFPF LPSN D
Sbjct: 181 PRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSNQD 240

Query: 241 DGR 244
           D R
Sbjct: 241 DRR 243

[Close]

BLAST of Lcy12g018330 vs. ExPASy TrEMBL
Match: A0A6J1CBB3 (uncharacterized protein LOC111009933 OS=Momordica charantia OX=3673 GN=LOC111009933 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 2.4e-112
Identity = 204/244 (83.61%), Postives = 218/244 (89.34%), Query Frame = 0


Query: 1   MGDDAYTRYAASADRAGSVARPGLSPYSEAPPL-TSYPNSTSVDPWHIPPDYLQKDINSS 60
           MGDDAY+RYAASADR GSVAR   S YSEAPPL TSYPN+ S+D WH PPDYLQKD NSS
Sbjct: 1   MGDDAYSRYAASADR-GSVARSSHSTYSEAPPLSTSYPNAASIDQWHTPPDYLQKDTNSS 60

Query: 61  GPGAYGYTDIGGIRNYPEPVIGGVTSGVSAKGYTSPFVDSLASQRQDIAVGSSPGLMGIA 120
           G GAYGY DIG IRNYPEPVIGGVTSGV+AKGYTSPF DSLASQRQ+IAVGSSPGL+G+A
Sbjct: 61  GTGAYGYADIGDIRNYPEPVIGGVTSGVTAKGYTSPFEDSLASQRQEIAVGSSPGLLGMA 120

Query: 121 DPGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHK 180
           D GH RASSLGLRNAE VPIS  ESNILF+DGLPTDCTRREVGH+FRPF+GYKDIRVVHK
Sbjct: 121 DMGHERASSLGLRNAECVPISTRESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHK 180

Query: 181 EPRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKTDSPALKIQFAHFPFHLPSNH 240
           EPRRSGDKA VLCFVEF+EA+ A AAM ALQGYKFDDKK DSPALK+ FAHFPF LPSNH
Sbjct: 181 EPRRSGDKAAVLCFVEFVEAKCAWAAMAALQGYKFDDKKPDSPALKVHFAHFPFRLPSNH 240

Query: 241 DDGR 244
           +DGR
Sbjct: 241 EDGR 243

[Close]

BLAST of Lcy12g018330 vs. ExPASy TrEMBL
Match: A0A5D3D938 (RNA-binding protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001990 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.6e-110
Identity = 200/243 (82.30%), Postives = 214/243 (88.07%), Query Frame = 0


Query: 1   MGDDAYTRYAASADRAGSVARPGLSPYSEAPPLTSYPNSTSVDPWHI-PPDYLQKDINSS 60
           MGDDAYTRYAASADRAGSVAR GLS YSEAPPL SYPNSTS+D WH  PPDY+ +D NS 
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSL 60

Query: 61  GPGAYGYTDIGGIRNYPEPVIGGVTSGVSAKGYTSPFVDSLASQRQDIAVGSSPGLMGIA 120
           GPGAYGYTD+GG   YPEPVIGGVTSGVSA GY SPF DSLASQRQDIAVGSSPG+MG A
Sbjct: 61  GPGAYGYTDLGGNSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRA 120

Query: 121 DPGHGRASSLG-LRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVH 180
           D GH RA+SL  +R AE  P S  ESNILF+DGLPTDCTRREVGH+FRPF+GYKDIRVVH
Sbjct: 121 DIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVH 180

Query: 181 KEPRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKTDSPALKIQFAHFPFHLPSN 240
           KEPRRSGDKATVLCFVEF+EA+ ++AAMEALQGYKFDDKK DSPALKIQFAHFPF LPSN
Sbjct: 181 KEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSN 240

Query: 241 HDD 242
           HDD
Sbjct: 241 HDD 243

[Close]

BLAST of Lcy12g018330 vs. ExPASy TrEMBL
Match: A0A1S3BU06 (RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.6e-110
Identity = 200/243 (82.30%), Postives = 214/243 (88.07%), Query Frame = 0


Query: 1   MGDDAYTRYAASADRAGSVARPGLSPYSEAPPLTSYPNSTSVDPWHI-PPDYLQKDINSS 60
           MGDDAYTRYAASADRAGSVAR GLS YSEAPPL SYPNSTS+D WH  PPDY+ +D NS 
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSL 60

Query: 61  GPGAYGYTDIGGIRNYPEPVIGGVTSGVSAKGYTSPFVDSLASQRQDIAVGSSPGLMGIA 120
           GPGAYGYTD+GG   YPEPVIGGVTSGVSA GY SPF DSLASQRQDIAVGSSPG+MG A
Sbjct: 61  GPGAYGYTDLGGNSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRA 120

Query: 121 DPGHGRASSLG-LRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVH 180
           D GH RA+SL  +R AE  P S  ESNILF+DGLPTDCTRREVGH+FRPF+GYKDIRVVH
Sbjct: 121 DIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVH 180

Query: 181 KEPRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKTDSPALKIQFAHFPFHLPSN 240
           KEPRRSGDKATVLCFVEF+EA+ ++AAMEALQGYKFDDKK DSPALKIQFAHFPF LPSN
Sbjct: 181 KEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSN 240

Query: 241 HDD 242
           HDD
Sbjct: 241 HDD 243

[Close]

BLAST of Lcy12g018330 vs. NCBI nr
Match: XP_022982403.1 (RNA-binding protein 2-like [Cucurbita maxima])

HSP 1 Score: 430.6 bits (1106), Expect = 8.7e-117
Identity = 208/243 (85.60%), Postives = 221/243 (90.95%), Query Frame = 0


Query: 1   MGDDAYTRYAASADRAGSVARPGLSPYSEAPPLTSYPNSTSVDPWHIPPDYLQKDINSSG 60
           MGDDAYTRYAAS DRAGSVAR GLS YSEAPPLTSYPNSTS+DPW IPPDYLQK+ +SSG
Sbjct: 1   MGDDAYTRYAASGDRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLQKETDSSG 60

Query: 61  PGAYGYTDIGGIRNYPEPVIGGVTSGVSAKGYTSPFVDSLASQRQDIAVGSSPGLMGIAD 120
           PG YGYTD+GGIRNYPEPVIGGVTSGVSA G TSPF D+ A QR DIAVGSSPGLM +AD
Sbjct: 61  PGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMAD 120

Query: 121 PGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHKE 180
            GH +A+SLGLRN E VPISAHESNILF+DGLPTDCTRREVGH+FRPF+GYKDIRVVHKE
Sbjct: 121 TGHEKANSLGLRNPERVPISAHESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 181 PRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKTDSPALKIQFAHFPFHLPSNHD 240
           PRR GDKATVLCFVEFIEAR++RAAMEALQGYKFDDKK DS ALKIQFAHFPF LPSNHD
Sbjct: 181 PRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSNHD 240

Query: 241 DGR 244
           D R
Sbjct: 241 DRR 243

[Close]

BLAST of Lcy12g018330 vs. NCBI nr
Match: XP_038896813.1 (RNA-binding protein 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 427.2 bits (1097), Expect = 9.7e-116
Identity = 207/243 (85.19%), Postives = 218/243 (89.71%), Query Frame = 0


Query: 1   MGDDAYTRYAASADRAGSVARPGLSPYSEAPPLTSYPNSTSVDPWHIPPDYLQKDINSSG 60
           MGDDAYTRYAASADRAGSVAR GLS YSEAPPLTSYPNSTS+D WHI PDYLQKD NS G
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLTSYPNSTSIDQWHITPDYLQKDTNSIG 60

Query: 61  PGAYGYTDIGGIRNYPEPVIGGVTSGVSAKGYTSPFVDSLASQRQDIAVGSSPGLMGIAD 120
           PGAYGYTD+GGI NYPEPVIG V SG SAKGYTSPF DSLASQRQDIAVGSSPG+MG+AD
Sbjct: 61  PGAYGYTDVGGISNYPEPVIGSVASGASAKGYTSPFEDSLASQRQDIAVGSSPGVMGMAD 120

Query: 121 PGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHKE 180
             H RA+SL LR AE  P S+ ESNILF+DGLPTDCTRREVGH+FRPF+GYKDIRVVHKE
Sbjct: 121 TAHERANSLSLRTAEGDPNSSRESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 181 PRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKTDSPALKIQFAHFPFHLPSNHD 240
           PRRSGDKA VLCFVEFIEAR+AR AMEALQGYKFDDKK DSP+LKIQFAHFPF LPSNHD
Sbjct: 181 PRRSGDKAMVLCFVEFIEARYARTAMEALQGYKFDDKKPDSPSLKIQFAHFPFRLPSNHD 240

Query: 241 DGR 244
           D R
Sbjct: 241 DRR 243

[Close]

BLAST of Lcy12g018330 vs. NCBI nr
Match: XP_022939988.1 (RNA-binding protein 2-like [Cucurbita moschata])

HSP 1 Score: 423.3 bits (1087), Expect = 1.4e-114
Identity = 206/243 (84.77%), Postives = 219/243 (90.12%), Query Frame = 0


Query: 1   MGDDAYTRYAASADRAGSVARPGLSPYSEAPPLTSYPNSTSVDPWHIPPDYLQKDINSSG 60
           MGDDAYTRYAASADRAGSVAR GLS YSEAPPLTSYPNSTS+DPW IPPDYL K+ +SSG
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKETDSSG 60

Query: 61  PGAYGYTDIGGIRNYPEPVIGGVTSGVSAKGYTSPFVDSLASQRQDIAVGSSPGLMGIAD 120
           PG YGYTD+GGIRNYPEPVIGGVTSGVSA G TSPF D+ A QR DIAVGSSPGLM +AD
Sbjct: 61  PGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMAD 120

Query: 121 PGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHKE 180
            GH +A+SLGLRN E VPISA ESNILF+DGLPTDCTRREVGH+FRPF+GYKDIRVVHKE
Sbjct: 121 TGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 181 PRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKTDSPALKIQFAHFPFHLPSNHD 240
           PRR GDKATVLCFVEFIEAR++RAAMEALQGYKFDDKK DS ALKIQFAHFPF LPSN D
Sbjct: 181 PRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSNQD 240

Query: 241 DGR 244
           D R
Sbjct: 241 DRR 243

[Close]

BLAST of Lcy12g018330 vs. NCBI nr
Match: KAG6608363.1 (RNA-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 423.3 bits (1087), Expect = 1.4e-114
Identity = 206/243 (84.77%), Postives = 219/243 (90.12%), Query Frame = 0


Query: 1   MGDDAYTRYAASADRAGSVARPGLSPYSEAPPLTSYPNSTSVDPWHIPPDYLQKDINSSG 60
           MGDDAYTRYAASADRAGSVAR GLS YSEAPPLTSYPNSTS+DPW IPPDYL K+ +SSG
Sbjct: 67  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKETDSSG 126

Query: 61  PGAYGYTDIGGIRNYPEPVIGGVTSGVSAKGYTSPFVDSLASQRQDIAVGSSPGLMGIAD 120
           PG YGYTD+GGIRNYPEPVIGGVTSGVSA G TSPF D+ A QR DIAVGSSPGLM +AD
Sbjct: 127 PGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMAD 186

Query: 121 PGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHKE 180
            GH +A+SLGLRN E VPISA ESNILF+DGLPTDCTRREVGH+FRPF+GYKDIRVVHKE
Sbjct: 187 TGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 246

Query: 181 PRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKTDSPALKIQFAHFPFHLPSNHD 240
           PRR GDKATVLCFVEFIEAR++RAAMEALQGYKFDDKK DS ALKIQFAHFPF LPSN D
Sbjct: 247 PRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSNQD 306

Query: 241 DGR 244
           D R
Sbjct: 307 DRR 309

[Close]

BLAST of Lcy12g018330 vs. NCBI nr
Match: XP_038896812.1 (RNA-binding protein 2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 422.5 bits (1085), Expect = 2.4e-114
Identity = 207/244 (84.84%), Postives = 218/244 (89.34%), Query Frame = 0


Query: 1   MGDDAYTRYAASADRAGSVARPGLSPYSEAPPLTSYPNSTSVDPWHIPPDYLQKDINSSG 60
           MGDDAYTRYAASADRAGSVAR GLS YSEAPPLTSYPNSTS+D WHI PDYLQKD NS G
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLTSYPNSTSIDQWHITPDYLQKDTNSIG 60

Query: 61  PGAYGYTDIGGIRNYPEPVIGGVTSGVSAKGYTSPFVDSLASQRQDIAVGSSPGLMGIAD 120
           PGAYGYTD+GGI NYPEPVIG V SG SAKGYTSPF DSLASQRQDIAVGSSPG+MG+AD
Sbjct: 61  PGAYGYTDVGGISNYPEPVIGSVASGASAKGYTSPFEDSLASQRQDIAVGSSPGVMGMAD 120

Query: 121 PGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHKE 180
             H RA+SL LR AE  P S+ ESNILF+DGLPTDCTRREVGH+FRPF+GYKDIRVVHKE
Sbjct: 121 TAHERANSLSLRTAEGDPNSSRESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 181 PRRSGDKATVLCFVEFIEARHARAAMEALQ-GYKFDDKKTDSPALKIQFAHFPFHLPSNH 240
           PRRSGDKA VLCFVEFIEAR+AR AMEALQ GYKFDDKK DSP+LKIQFAHFPF LPSNH
Sbjct: 181 PRRSGDKAMVLCFVEFIEARYARTAMEALQAGYKFDDKKPDSPSLKIQFAHFPFRLPSNH 240

Query: 241 DDGR 244
           DD R
Sbjct: 241 DDRR 244

[Close]

BLAST of Lcy12g018330 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 108.6 bits (270), Expect = 7.1e-24
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 0


Query: 120 DPGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHK 179
           D G G+  S+G    E  P+    SN L+++GLP++C+RREV HIFRPFVGY+++R+V +
Sbjct: 298 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 357

Query: 180 EPRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKTDSPALKIQFAHFPFHLPSNH 239
           + +      TVLCFV+F  +  A  A+ ALQ Y+ D+ + DS  L++QF   P   P   
Sbjct: 358 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQR 417

Query: 240 DDGR 244
              R
Sbjct: 418 GGRR 421

[Close]

BLAST of Lcy12g018330 vs. TAIR 10
Match: AT1G21320.2 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 108.6 bits (270), Expect = 7.1e-24
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 0


Query: 120 DPGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHK 179
           D G G+  S+G    E  P+    SN L+++GLP++C+RREV HIFRPFVGY+++R+V +
Sbjct: 130 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 189

Query: 180 EPRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKKTDSPALKIQFAHFPFHLPSNH 239
           + +      TVLCFV+F  +  A  A+ ALQ Y+ D+ + DS  L++QF   P   P   
Sbjct: 190 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQR 249

Query: 240 DDGR 244
              R
Sbjct: 250 GGRR 253

[Close]

BLAST of Lcy12g018330 vs. TAIR 10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-22
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 144 SNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHKEPRRSGDKATVLCFVEFIEARHAR 203
           SN L+++GLP++C+RREV HIFRPFVGY+++R+V K+ +       VLCFV+F     A 
Sbjct: 135 SNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAA 194

Query: 204 AAMEALQGYKFDDKKTDSPALKIQFAHFPFHLP 237
            A+ ALQGY+ D+ ++DS  L++QF+  P   P
Sbjct: 195 TALSALQGYRMDENESDSKFLRLQFSRKPGSRP 227

[Close]

BLAST of Lcy12g018330 vs. TAIR 10
Match: AT1G76940.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-22
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 144 SNILFIDGLPTDCTRREVGHIFRPFVGYKDIRVVHKEPRRSGDKATVLCFVEFIEARHAR 203
           SN L+++GLP++C+RREV HIFRPFVGY+++R+V K+ +       VLCFV+F     A 
Sbjct: 81  SNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAA 140

Query: 204 AAMEALQGYKFDDKKTDSPALKIQFAHFPFHLP 237
            A+ ALQGY+ D+ ++DS  L++QF+  P   P
Sbjct: 141 TALSALQGYRMDENESDSKFLRLQFSRKPGSRP 173

[Close]

BLAST of Lcy12g018330 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 49.3 bits (116), Expect = 5.1e-06
Identity = 29/106 (27.36%), Postives = 49/106 (46.23%), Query Frame = 0


Query: 113 PGLMGIADPGHGRASSLGLRNAEFVPISAHESNILFIDGLPTDCTRREVGHIFRPFVGYK 172
           PG+ G A P   +    G          A  +NILF+  LP + T   +  +F  + G+K
Sbjct: 146 PGVYGAAPP-LSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFK 205

Query: 173 DIRVVHKEPRRSGDKATVLCFVEFIEARHARAAMEALQGYKFDDKK 219
           ++R++  +P         + FVEF +   +  AM+ LQG+K    +
Sbjct: 206 EVRMIEAKPG--------IAFVEFADEMQSTVAMQGLQGFKIQQNQ 242

The following BLAST results are available for this feature:

BLAST of Lcy12g018330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HWF9	1.0e-22	41.13	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
Q8H0P8	1.4e-21	52.81	RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1	[more]
G7ID19	2.5e-21	37.59	RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1	[more]
A1A6K6	4.2e-21	47.31	Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE...	[more]
Q6JB11	1.3e-19	51.16	Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1	[more]

BLAST of Lcy12g018330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J4R2	4.2e-117	85.60	RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111481239 PE=4 SV=1	[more]
A0A6J1FN25	6.8e-115	84.77	RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111445759 PE=4 SV...	[more]
A0A6J1CBB3	2.4e-112	83.61	uncharacterized protein LOC111009933 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A5D3D938	6.6e-110	82.30	RNA-binding protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BU06	6.6e-110	82.30	RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE...	[more]

BLAST of Lcy12g018330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982403.1	8.7e-117	85.60	RNA-binding protein 2-like [Cucurbita maxima]	[more]
XP_038896813.1	9.7e-116	85.19	RNA-binding protein 2-like isoform X2 [Benincasa hispida]	[more]
XP_022939988.1	1.4e-114	84.77	RNA-binding protein 2-like [Cucurbita moschata]	[more]
KAG6608363.1	1.4e-114	84.77	RNA-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038896812.1	2.4e-114	84.84	RNA-binding protein 2-like isoform X1 [Benincasa hispida]	[more]

BLAST of Lcy12g018330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21320.1	7.1e-24	41.13	nucleotide binding;nucleic acid binding	[more]
AT1G21320.2	7.1e-24	41.13	nucleotide binding;nucleic acid binding	[more]
AT1G76940.1	3.0e-22	47.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76940.2	3.0e-22	47.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G47580.1	5.1e-06	27.36	spliceosomal protein U1A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 146..229 e-value: 4.8E-7 score: 39.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 147..218 e-value: 1.7E-12 score: 47.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 145..231 score: 11.673454
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 140..231 e-value: 1.1E-17 score: 65.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 15..236
None	No IPR available	PANTHER	PTHR10501:SF41	PROTEIN COUCH POTATO	coord: 15..236
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 145..227 e-value: 2.00296E-32 score: 111.593
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 122..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g018330.1	Lcy12g018330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding