Lcy12g017680 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g017680
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Nuclear nucleic acid-binding protein C1D
Location	Chr12: 45284937 .. 45287221 (-)
RNA-Seq Expression	Lcy12g017680
Synteny	Lcy12g017680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAATCTCAAGACACTGAGATCGGAAGCGTGTCCGGCCAAACTGCCGCCATAAACCTCTTCCAGTTCGAACCCAAAAGCCCTACCCGTGCCTTTTCCCCTCTGCAAATTAACAACGACGACGGTCCAAGCTCCCCTTCGCCGTCGCCGTCGCCATCGCAAATCATCTCCTTCTAAGGATTTGAATTTCACATCTTGGGTTTCTGTGTGAGCCCGTGAAATAGACGGAGTTCAAAATTTGGGGCAAATATGGAGGGAGGTGTTCGAGAATCCGCTGTGGTGCCCGAGAAAGTGATGGATTCAGTGAAGAAGACATTGGACAATGTAGAACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATCGCCGAGCCTGATGTTCTTGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAGCCACTACCACTCTCTTCGCATGTAAATTTTTTTGATTACTTGTCATTATACTGGATTTGTTTCTCTTGTTTTTTGGATTATGGAGGCGAAATTTTTGTTTGTTTTGGTGAATTTTAGTAAAGTTGAGGTGTAGCGGAGTTCACCCTGATGATCATCCTATCAAGTCAGAGCTTGTAATTATTCTCATACCTTGTATCTGGTGATTAAAACTGAAATTTTCTCATATGGGTAGTAATGTTATTCTCCCATTGCTTTTGAAAAGAATCATTCTTATTCTTTCTTATGCATGTAGGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGGTATGTTTGAGTTTTGATTTTTAGTTTATATCAGCATCGTCTGTTTCTTTATTGTTGCTGCTTCCTTTCACAGTAGATTGATGATTTTGCATTTAAATTTGTTCATGAAGCACCATTGAAGCGATCTACTACCTTGAACTATCAAGCTGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACCCAAGGTTGGTTAATTTGTTTGCTTTTTTGTTCTGGGGAGGGGGGTTGTGTGCTTGATTCCCTTTGATCAAGGAAATATTCCGATATTTTCAGATCAAAAGCAGAGTATGAGGGATATTAGTAGGGGAAAGGGACCAAGTGTGAAGCAACTAGAGAGGAATGTACAAAAGAAGAGGAAGTATCAGTCTTCAGAAAAACAATCTGTTCAAATTGCTGCTAAGGAGTTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGACAGTAATGGAGGTTTGCAGGGACCATTATGTGGGGACGCTTCAGATGATGATGACCTGCAGGAGGATTGAATTCCGGATTTCACTTGGTACCTGTTTATCACATTTATTTCTAATTTGGGCGTCCTTCTCTTTCAATAAATGCTAGTTTTTCCATATGATTGATGCTAGAATAAGATTTGATTTTCTTAATAAATTTTCCATTTTAGTTCTATTGCTCATTCTTGTGCTACTGCTTGTTGTTAGCTTGCTTAGCTTAGCGTATGGATTGCGAGTTTTAAATACAGAATGTAGTCTGTTTCTGGACCTCTTTGATGTGTTTTTACATTGTGATATGTATATCATGTTATGTTATCATTGTCAAGCCAAGGCCTTTATGCATTATTGCAGCAAAGTTTCAACTGCAATGATATAGTTTTTCTTCAATTGGAACTGTTTCCCTTCCCTCACCAAACTGAGGGCCAAGTAAACTTGAATGGTTTTTTTGTTTACTCCATGTAAATATAACACTTCCCTTCATAGAAATATGTGCGTGTGCGCGTGTATTCAATTATGTTTTGATTCTTTCTCACTTTACATCTTTCAGGAATATGAAAACCAGATTCACCTGTGCCCTTAATAACCCAACTCCTGAAGAATTGGTCCATTTTGAAGTTGGAGAGGATCGTCGGTTTTCTTTTTCTTTCCTTCTCCTAGTTTTTCCCTACAACATTAAGTCGTTTTCCCTTTACTTTATTTAAAAGTCTTCATATATATGCATTGGGAGTTTCAGTTCCATCATAAGTTTCTATTAGGACAGGACCTGGTTGGGATTTTGGCATTCTACTCTTTCTCACAGGCCGATCTTCCTGTTTGCTTCCTCCCCAATTTTTTAGAACTAGTGTGATCATATGAACAAGACATGATCTTGATAAAAGGAGTCCGTGCTTTTTACATGTAAAGTAGCCTACTTTGGTAGCTGACTTTCTAGTTCTTTTGGGGTCTGTATATCAGTCATCATCTTGTCATGTGGATTAGTCTTTTGCCATAAATTAATAATAGTATGTTCTTTGTGATAA

mRNA sequence

GAAAAAATCTCAAGACACTGAGATCGGAAGCGTGTCCGGCCAAACTGCCGCCATAAACCTCTTCCAGTTCGAACCCAAAAGCCCTACCCGTGCCTTTTCCCCTCTGCAAATTAACAACGACGACGGTCCAAGCTCCCCTTCGCCGTCGCCGTCGCCATCGCAAATCATCTCCTTCTAAGGATTTGAATTTCACATCTTGGGTTTCTGTGTGAGCCCGTGAAATAGACGGAGTTCAAAATTTGGGGCAAATATGGAGGGAGGTGTTCGAGAATCCGCTGTGGTGCCCGAGAAAGTGATGGATTCAGTGAAGAAGACATTGGACAATGTAGAACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATCGCCGAGCCTGATGTTCTTGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAGCCACTACCACTCTCTTCGCATTAAAGTTGAGGTGTAGCGGAGTTCACCCTGATGATCATCCTATCAAGTCAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGCACCATTGAAGCGATCTACTACCTTGAACTATCAAGCTGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACCCAAGATCAAAAGCAGAGTATGAGGGATATTAGTAGGGGAAAGGGACCAAGTGTGAAGCAACTAGAGAGGAATGTACAAAAGAAGAGGAAGTATCAGTCTTCAGAAAAACAATCTGTTCAAATTGCTGCTAAGGAGTTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGACAGTAATGGAGGTTTGCAGGGACCATTATGTGGGGACGCTTCAGATGATGATGACCTGCAGGAGGATTGAATTCCGGATTTCACTTGGAATATGAAAACCAGATTCACCTGTGCCCTTAATAACCCAACTCCTGAAGAATTGGTCCATTTTGAAGTTGGAGAGGATCGTCGGTTTTCTTTTTCTTTCCTTCTCCTAGTTTTTCCCTACAACATTAAGTCGTTTTCCCTTTACTTTATTTAAAAGTCTTCATATATATGCATTGGGAGTTTCAGTTCCATCATAAGTTTCTATTAGGACAGGACCTGGTTGGGATTTTGGCATTCTACTCTTTCTCACAGGCCGATCTTCCTGTTTGCTTCCTCCCCAATTTTTTAGAACTAGTGTGATCATATGAACAAGACATGATCTTGATAAAAGGAGTCCGTGCTTTTTACATGTAAAGTAGCCTACTTTGGTAGCTGACTTTCTAGTTCTTTTGGGGTCTGTATATCAGTCATCATCTTGTCATGTGGATTAGTCTTTTGCCATAAATTAATAATAGTATGTTCTTTGTGATAA

Coding sequence (CDS)

ATGGAGGGAGGTGTTCGAGAATCCGCTGTGGTGCCCGAGAAAGTGATGGATTCAGTGAAGAAGACATTGGACAATGTAGAACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATCGCCGAGCCTGATGTTCTTGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAGCCACTACCACTCTCTTCGCATTAAAGTTGAGGTGTAGCGGAGTTCACCCTGATGATCATCCTATCAAGTCAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGCACCATTGAAGCGATCTACTACCTTGAACTATCAAGCTGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACCCAAGATCAAAAGCAGAGTATGAGGGATATTAGTAGGGGAAAGGGACCAAGTGTGAAGCAACTAGAGAGGAATGTACAAAAGAAGAGGAAGTATCAGTCTTCAGAAAAACAATCTGTTCAAATTGCTGCTAAGGAGTTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGACAGTAATGGAGGTTTGCAGGGACCATTATGTGGGGACGCTTCAGATGATGATGACCTGCAGGAGGATTGA

Protein sequence

MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQDQKQSMRDISRGKGPSVKQLERNVQKKRKYQSSEKQSVQIAAKEFLEKAARELLGDSNGGLQGPLCGDASDDDDLQED

Homology

[Close]

BLAST of Lcy12g017680 vs. ExPASy Swiss-Prot
Match: Q5XJ97 (Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.9e-10
Identity = 42/140 (30.00%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 12  PEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALK 71
           P ++ D++     ++  VQ  + + +S++  D L ++ PL++A+  L+ A A  ++F + 
Sbjct: 11  PTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLEQAKLDLMSAYALNSMFWMY 70

Query: 72  LRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDL 131
           L   GV+P DHPIK ELER+  Y +K++      KA       ++ +AA+RF+ ++L D 
Sbjct: 71  LVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKA-----AHIDKEAASRFVRNALWD- 130

Query: 132 TQDQKQSMRDISRGKGPSVK 152
             D+K+  +   + KG   K
Sbjct: 131 ADDKKRKDKTEHQQKGKHTK 144

[Close]

BLAST of Lcy12g017680 vs. ExPASy Swiss-Prot
Match: Q3KPR1 (Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-09
Identity = 35/124 (28.23%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 12  PEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALK 71
           P ++ + +    ++V  V   L   +S++  ++L +++PL++A+  L+ A    +LF + 
Sbjct: 12  PTEIHEYLMAFENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIY 71

Query: 72  LRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDL 131
           L   G++P +HP+K ELER+  Y ++++          K++  L+  AA RFI+H+L D 
Sbjct: 72  LTTQGINPKEHPVKEELERIRGYMNRVKEI-----TDRKKAARLDKGAARRFIKHALCDP 130

Query: 132 TQDQ 136
           T ++
Sbjct: 132 TSEE 130

[Close]

BLAST of Lcy12g017680 vs. ExPASy Swiss-Prot
Match: Q5ZHS3 (Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 32/117 (27.35%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 12  PEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALK 71
           P ++ D +     ++  V   L + +S++  ++L +++PL++A+  L+ A    ++F + 
Sbjct: 11  PTEIHDYLTTFEKSLTSVDEMLKTMMSVSRSELLQKLEPLEQAKLDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSL 129
           L   G++P +HP+K ELER+  Y +K++       A  K+++ L+  AA+RF+ ++L
Sbjct: 71  LATQGINPKEHPVKQELERIRTYMNKVKEI-----ADKKKASKLDKGAASRFVRNAL 122

[Close]

BLAST of Lcy12g017680 vs. ExPASy Swiss-Prot
Match: Q7TSU0 (Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 35/135 (25.93%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 12  PEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALK 71
           P ++ +S+     ++  V   L + +S++  ++L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PVEIHESLSALESSLGAVDDMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDL 131
           L   GV+P +HP+K ELER+ +Y ++++          K++  L+  AA+RF++++L + 
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEI-----TDKKKAAKLDRGAASRFVKNALWE- 130

Query: 132 TQDQKQSMRDISRGK 147
              QK +    ++GK
Sbjct: 131 -PKQKNTPNVANKGK 138

[Close]

BLAST of Lcy12g017680 vs. ExPASy Swiss-Prot
Match: O35473 (Nuclear nucleic acid-binding protein C1D OS=Mus musculus OX=10090 GN=C1d PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-07
Identity = 30/117 (25.64%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 12  PEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALK 71
           P ++ +S+     ++  V   L + ++++  ++L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PVEIHESLTALESSLGAVDDMLKTMMAVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSL 129
           L   GV+P +HP+K ELER+ +Y ++++          K++  L+  AA+RF++++L
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEI-----TDKKKAAKLDRGAASRFVKNAL 122

[Close]

BLAST of Lcy12g017680 vs. ExPASy TrEMBL
Match: A0A6J1FIR0 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111445751 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.3e-100
Identity = 198/211 (93.84%), Postives = 206/211 (97.63%), Query Frame = 0


Query: 1   MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPEKVMDSVK TLDNVEQVQTHLISFLSIAEPDVLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARATTTLFALKLRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           +RATTTLFALKLRCSGVHPDDHPIKSELERLSLYQ+KLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPSVKQLERNVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QKQ MRDISRGKGP +KQ+ER VQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDASDDDDLQED 212
           KAARELLGD+NGGLQGPLCGDAS +DDLQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDAS-NDDLQED 210

[Close]

BLAST of Lcy12g017680 vs. ExPASy TrEMBL
Match: A0A6J1J0U0 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC111480869 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.7e-98
Identity = 193/206 (93.69%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 1   MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPEK MDSVK TLD+VEQVQTHLISFLSIAEPDVLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARATTTLFALKLRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           +RATTTLFALKLRCSGVHPDDHPIKSELERLSLYQ+KLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPSVKQLERNVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QKQ MRDISRGKGP +KQLER VQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDASDDD 207
           KAARELLGD+NGGLQGPLCGDAS+DD
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDD 206

[Close]

BLAST of Lcy12g017680 vs. ExPASy TrEMBL
Match: A0A0A0L118 (Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651890 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.7e-98
Identity = 197/211 (93.36%), Postives = 200/211 (94.79%), Query Frame = 0


Query: 1   MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVR+ AVVPEKVMDSVK TLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  ARATTTLFALKLRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           AR TTTLFALKLRCSGVH DDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPSVKQLERNVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QK SMRDISRGKG  +KQLERNVQKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDASDDDDLQED 212
           KAARELLGD NGGLQGPLCGDA DDD LQED
Sbjct: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 211

[Close]

BLAST of Lcy12g017680 vs. ExPASy TrEMBL
Match: A0A5D3D8Y3 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001320 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.5e-97
Identity = 194/211 (91.94%), Postives = 200/211 (94.79%), Query Frame = 0


Query: 1   MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVR+ AVVPEKVMDSVK TLDNVE VQTHLISFLSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARATTTLFALKLRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           AR TTTLFALKLRC+GVH DDHPIKSELERLSLY+DKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPSVKQLERNVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QK SMRDISRGKG  +KQLERNVQKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDASDDDDLQED 212
           KAARELLGDSNGGLQGPLCGDASDDD LQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQED 211

[Close]

BLAST of Lcy12g017680 vs. ExPASy TrEMBL
Match: A0A1S3BUS6 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.5e-97
Identity = 194/211 (91.94%), Postives = 200/211 (94.79%), Query Frame = 0


Query: 1   MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVR+ AVVPEKVMDSVK TLDNVE VQTHLISFLSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARATTTLFALKLRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           AR TTTLFALKLRC+GVH DDHPIKSELERLSLY+DKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPSVKQLERNVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QK SMRDISRGKG  +KQLERNVQKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDASDDDDLQED 212
           KAARELLGDSNGGLQGPLCGDASDDD LQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQED 211

[Close]

BLAST of Lcy12g017680 vs. NCBI nr
Match: XP_022939979.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata] >XP_022939980.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata])

HSP 1 Score: 373.6 bits (958), Expect = 1.1e-99
Identity = 198/211 (93.84%), Postives = 206/211 (97.63%), Query Frame = 0


Query: 1   MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPEKVMDSVK TLDNVEQVQTHLISFLSIAEPDVLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARATTTLFALKLRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           +RATTTLFALKLRCSGVHPDDHPIKSELERLSLYQ+KLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPSVKQLERNVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QKQ MRDISRGKGP +KQ+ER VQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDASDDDDLQED 212
           KAARELLGD+NGGLQGPLCGDAS +DDLQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDAS-NDDLQED 210

[Close]

BLAST of Lcy12g017680 vs. NCBI nr
Match: KAG7037658.1 (Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370.9 bits (951), Expect = 7.1e-99
Identity = 197/211 (93.36%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPEKVMDSVK TLDNVEQVQTHLISFLSIA PDVLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAGPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARATTTLFALKLRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           +RATTTLFALKLRCSGVHPDDHPIKSELERLSLYQ+KLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPSVKQLERNVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QKQ MRDISRGKGP +KQ+ER VQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDASDDDDLQED 212
           KAARELLGD+NGGLQGPLCGDAS +DDLQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDAS-NDDLQED 210

[Close]

BLAST of Lcy12g017680 vs. NCBI nr
Match: XP_023524382.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370.5 bits (950), Expect = 9.3e-99
Identity = 196/211 (92.89%), Postives = 206/211 (97.63%), Query Frame = 0


Query: 1   MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPEKVMDSVK TLDNVEQV+THLISFLSIAEPDVLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVKTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARATTTLFALKLRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           +RATTTLFALKLRCSGVHPDDHPIKSELERLSLYQ+KLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPSVKQLERNVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDL+Q+QKQ MRDISRGKGP +KQ+ER VQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLSQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDASDDDDLQED 212
           KAARELLGD+NGGLQGPLCGDAS +DDLQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDAS-NDDLQED 210

[Close]

BLAST of Lcy12g017680 vs. NCBI nr
Match: XP_022981849.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima] >XP_022981850.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima])

HSP 1 Score: 368.6 bits (945), Expect = 3.5e-98
Identity = 193/206 (93.69%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 1   MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPEK MDSVK TLD+VEQVQTHLISFLSIAEPDVLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARATTTLFALKLRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           +RATTTLFALKLRCSGVHPDDHPIKSELERLSLYQ+KLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPSVKQLERNVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QKQ MRDISRGKGP +KQLER VQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDASDDD 207
           KAARELLGD+NGGLQGPLCGDAS+DD
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDD 206

[Close]

BLAST of Lcy12g017680 vs. NCBI nr
Match: XP_004145496.1 (nuclear nucleic acid-binding protein C1D [Cucumis sativus] >KGN55423.1 hypothetical protein Csa_012234 [Cucumis sativus])

HSP 1 Score: 368.6 bits (945), Expect = 3.5e-98
Identity = 197/211 (93.36%), Postives = 200/211 (94.79%), Query Frame = 0


Query: 1   MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVR+ AVVPEKVMDSVK TLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  ARATTTLFALKLRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           AR TTTLFALKLRCSGVH DDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPSVKQLERNVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QK SMRDISRGKG  +KQLERNVQKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDASDDDDLQED 212
           KAARELLGD NGGLQGPLCGDA DDD LQED
Sbjct: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 211

[Close]

BLAST of Lcy12g017680 vs. TAIR 10
Match: AT5G25080.1 (Sas10/Utp3/C1D family )

HSP 1 Score: 216.5 bits (550), Expect = 2.1e-56
Identity = 116/214 (54.21%), Postives = 161/214 (75.23%), Query Frame = 0


Query: 1   MEGGVRES-----AVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQ 60
           MEGG   S      VVPE  +++V +TL  +++++  L   L++AEP+VLA MQPLQRA+
Sbjct: 1   MEGGGGSSGGGAGGVVPESAIEAVNQTLAYLKELKPQLEQMLTLAEPEVLAAMQPLQRAK 60

Query: 61  SMLLLARATTTLFALKLRCSGVHPDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTL 120
           +M LLA ATTTL+ L+LRC+GV PDDH +KSE+ER+++Y++K ++ +  SK PL+ +T L
Sbjct: 61  TMHLLAEATTTLYELRLRCTGVDPDDHRVKSEIERINVYREKFQKCVDQSKGPLRPTTVL 120

Query: 121 NYQAATRFIEHSLPDLTQDQKQSMRDISRGKGPSVKQLERNVQKKRKYQSSEKQSVQIAA 180
           N QAATRFIEHSLPDLT  QKQS+RD+S+G+   ++  E +  +KRKYQS+EKQSVQ AA
Sbjct: 121 NRQAATRFIEHSLPDLTSTQKQSIRDLSKGEKSRIRYSETSA-RKRKYQSNEKQSVQSAA 180

Query: 181 KEFLEKAARELLGDSNGGLQGPLCGDASDDDDLQ 210
           K+FLEKAARE++G +  GL+GPL   A   DD++
Sbjct: 181 KDFLEKAAREIIGHNENGLKGPLVAAADGSDDVE 213

The following BLAST results are available for this feature:

BLAST of Lcy12g017680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XJ97	2.9e-10	30.00	Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1	[more]
Q3KPR1	4.2e-09	28.23	Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 S...	[more]
Q5ZHS3	1.6e-08	27.35	Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV...	[more]
Q7TSU0	1.0e-07	25.93	Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D P...	[more]
O35473	1.8e-07	25.64	Nuclear nucleic acid-binding protein C1D OS=Mus musculus OX=10090 GN=C1d PE=1 SV...	[more]

BLAST of Lcy12g017680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIR0	5.3e-100	93.84	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1J0U0	1.7e-98	93.69	Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A0A0L118	1.7e-98	93.36	Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651...	[more]
A0A5D3D8Y3	1.5e-97	91.94	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BUS6	1.5e-97	91.94	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742...	[more]

BLAST of Lcy12g017680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939979.1	1.1e-99	93.84	nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata] >XP_022939980...	[more]
KAG7037658.1	7.1e-99	93.36	Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_023524382.1	9.3e-99	92.89	nuclear nucleic acid-binding protein C1D-like [Cucurbita pepo subsp. pepo]	[more]
XP_022981849.1	3.5e-98	93.69	nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima] >XP_022981850.1...	[more]
XP_004145496.1	3.5e-98	93.36	nuclear nucleic acid-binding protein C1D [Cucumis sativus] >KGN55423.1 hypotheti...	[more]

BLAST of Lcy12g017680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25080.1	2.1e-56	54.21	Sas10/Utp3/C1D family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007146	Sas10/Utp3/C1D	PFAM	PF04000	Sas10_Utp3	coord: 24..97 e-value: 2.2E-7 score: 31.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..171
None	No IPR available	PANTHER	PTHR15341:SF3	NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D	coord: 9..199
IPR011082	Exosome-associated factor Rrp47/DNA strand repair C1D	PANTHER	PTHR15341	SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR	coord: 9..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g017680.1	Lcy12g017680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000178	exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding