Lcy12g017390 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g017390
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description60S ribosomal protein L39
LocationChr12: 45016810 .. 45020118 (-)
RNA-Seq ExpressionLcy12g017390
SyntenyLcy12g017390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTAAGTATTCCTCATGATTTTACACGAATCATCCAAAAATCACATGTAAATCACTTTCAATAATTATATTTTTTAAAAATTATATGGAATCAGTCTAATATATACCATCATAAATTAATATGAATTTTGGGCATAAAACTTATGATTAAAGAAAAAATCCATTAAGGAAAACAGCAAAGTGTGATACACTACACATGTAAGTATTTTCCATCAAAGTAGATGAGAGATCAATAATTATTTATCTACCATAATAAATAATGATCGATATCATTTCGGGTCAAATAAAATGACATGACTTTTAATATAATGGTGTGCAAGTAGCAACGTTTTTTTGTACATGGGGTCCCACACAAGTCACGTGCCAGTCTCGTTGAATAATTAAATTTATATTAGAAAAAATGTGTTGGAAATTAATTTGTAATATTATATGATCATATAATATAGAAAGATGTCATTGTTTCAAAGTGTCAACTGCAAAACACTGTATTTTCATTCATAGAACGTATCAGAAGGGTTAGAATAACCTGTGCTGGATTTAAATCCCAAGTTGGTATTTTCCCTAACAAACACGACAAAATTTTTAAAATTAAAAATTAAAAAAGAAAAAAAAAACAAAAGAAATAATAATATTAAATGTAATTTAATTTTATAGATATACTATGATTTCCTAACTTTTTTTTTTCTTTCCAATTCAGTCCTTAATATTACTAAATTCTCAATTTTACCTCTAGTAAAATTGATAATTCTCAATTAGATTTTTTTTATCTTTAACAAAAAGTTTATCTCATTAAATTATTATTCTATTTATATATTTTAACATGCTAACGTGTCATTACAAAAATTGAATTTATTGATGGATAGGTCATATTTTGAGAAAATTTTGATCTCATGTTTTAAATAACATCTAAATGACATGTCTATATGTTCAAATACATTAATAAAATAATGATGTTAAAATACGTAAATAAAACAACAATGTAATGGTCAATTAACTATTTCTTAACAAGAATCGACAATTTTTTAACAAAGAATGATTTAATTGAAAATTTTAATAATATTGAGGGTAAAATTGATTTTTTTTAAAAAAAAAAAATTAAGGACCAAATTGAGAATAGTCAAAAAGATCGACCATGCGTATATTTTGTCTAAAATTTATGTTAATGAATGGAAAAAAACTTGCATCTATACGGGTATGAGGAAACAAAGTTTTGTTCTTTATGAATCCCTCAACTCTCTCTTCTTTACTAAGCTGGATGCCTTTTACTTATTTTCATAACCTACTTTAACGCACTATTCTAATATATATATTTTTTTAATACATCAACATTTGGGTGGGAGATTCGGACTTCTGACCTTTTGGTCGAAGGTATATGCTAATTACCGTTGAGCTAAACTTACTTTGACTCTAATATTCTCATTTAGATGACCTAAAAAAATAACCCGATAAAATTCTATATTTTTTTTGGTCATATTAATGGAAAGTAATAAAGTATATTGAAAAACTCGTTGAGAAAAATAAGAAAAAGTTTCATAGTCAACCATTTTCACTATTCCTTGCATATAAAAATTTTCATATTAGCCTTTTTTTTTTAGCAGACATTAAATCAAACAAATCATTATTTCGGGTAAATGTCTTTCATATTTAATAACTCGTCGCTATTTTAAAGTTCAACGTTTTCATAATTTTTTTTCCCTTTCAAAAAAAAAAAAAAAACATTTTCATAATTTTTTTATTTTTTATTTTTTTTATTTTTAGAAAGCCAACGTTTTCATAATGATTGAAGCATGTAAATAAGATTTTATAACTATAGTTAAAGAAGTCAATTTTAAAATAAATAAATATTGTGGGAGAGTATTAAAAGTCACTTTAAATAAAAGAGTAGAGTACGTATGTGTATGATAAAATTTGGAAAAAGAAAAAAAAAAAAGTAATTTATTTGCATTGCATCATAATTATTATTATTTTTTTCCCTTTTTCAAAAAAAAAATTATTTTTTTCCCAAAGCTAGCACATAGTTTTGATTATGCGGTTTTCCTATAGTCAATTTGTATTAAAAAAAAAAAAAAGTTTGGTAATGTGAATGTAATTCTATTGCGTCAATTGCAAATCCTTATGGTGACATTAAATTGATTTCATATAAAATACCTTTAAATTTTAATATAGACTTGTTGAAGTTGGCATAGTTCAATATGAATTTAAATGTTTTTTAAAAAAACATTTATGAGATCTTTAGATTATATTTTTTATATATTCTTTGAATTTCATTTTAAACATATTTGTTTATATATTGTTAGAAGCTTTAGTACATTTTTTTTATAAAAATTTCTATGTAGTATTTTAACTTGTAGTACATTTTAAATAAGTTATATTTTAGTTTATTCCCTAAAAAGAAAATACTTTTGTTAAAATAATAATAATAATAATAATAATAATAATAATTAATGGGCATAGCCCTACCTTTTGGGCCATGAGTTTCATGTTGGCCCAATTGACTTTTCAAGACAAGAGCGTGGTCAAGGTTGGGCTTAATTTCAGGCCCATTTACTGAGAGTAAACATCCGACTCGGCTGCCCCGTATAAAAGTTGTTCGCTACAGATAGGGTTTTTCTTAGACCGCCGTCTGCTTCGAAGCTCGCCGCCGATCAAAATGGTACGTATTGCTATGCGACTCTCTGAACTTCCCCCCCCCCCCCCCCCCTTTAAACCTAGTGCTGTTCTTCGTTCTCCGTTGGATGATTGAAACTGTGCGAGTTTGTAATTCGATTTTCTATTCTCTTACAATCCGCAGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGCCTGAGAACCGACAACACGATCAGGTATATTATGGCTACGCCATTTGAATCTGCATATTTTCCGTTCGAATCTCTCTCTTTACTTGTCTCGCTTCGATTTTGTCATACATTCTGACGTTCTACTTTCGATCATTTTTCAGATACAACGCAAAGCGCAGGCACTGGCGCCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTATAACTTCAATGTTCACTTACTTTGAATTTGTTAAGATTGAGAACACGAATTTTCTTAAGGACCTATTATTCTATTTGTGCTACTGAAATTTAGTTCATGTGATATTTTTGTTGAATCATCTCTACACTCAAAGTTTGAAGTACTTTGGGATTGAGTGAATTTACTAGCGATGGATATGACAGTGGATTAGCAGTTTTTCCAATCCTTTATGGCATCTACTTGCTTCTGTTC

mRNA sequence

ATGAGGGTTTTTCTTAGACCGCCGTCTGCTTCGAAGCTCGCCGCCGATCAAAATGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGCCTGAGAACCGACAACACGATCAGATACAACGCAAAGCGCAGGCACTGGCGCCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTATAACTTCAATGTTCACTTACTTTGAATTTGTTAAGATTGAGAACACGAATTTTCTTAAGGACCTATTATTCTATTTGTGCTACTGAAATTTAGTTCATGTGATATTTTTGTTGAATCATCTCTACACTCAAAGTTTGAAGTACTTTGGGATTGAGTGAATTTACTAGCGATGGATATGACAGTGGATTAGCAGTTTTTCCAATCCTTTATGGCATCTACTTGCTTCTGTTC

Coding sequence (CDS)

ATGAGGGTTTTTCTTAGACCGCCGTCTGCTTCGAAGCTCGCCGCCGATCAAAATGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGCCTGAGAACCGACAACACGATCAGATACAACGCAAAGCGCAGGCACTGGCGCCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTATAACTTCAATGTTCACTTACTTTGAATTTGTTAAGATTGAGAACACGAATTTTCTTAAGGACCTATTATTCTATTTGTGCTACTGA

Protein sequence

MRVFLRPPSASKLAADQNAVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQIQRKAQALAPHQARVLRCFRFITSMFTYFEFVKIENTNFLKDLLFYLCY
Homology
[Close]
BLAST of Lcy12g017390 vs. ExPASy TrEMBL
Match: A0A5E4E8H2 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B001478 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.7e-12
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 18  NAVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQIQRKAQALAPHQARVLRCF 73
           +AV QD  NQEEA EEDEAEQA+P+LDP E+RQH Q+QR+AQALAPHQAR LRCF
Sbjct: 70  SAVPQDLHNQEEAGEEDEAEQAHPSLDPFEDRQHHQVQRQAQALAPHQARFLRCF 124

[Close]
BLAST of Lcy12g017390 vs. ExPASy TrEMBL
Match: A0A498HNJ3 (Uncharacterized protein (Fragment) OS=Malus domestica OX=3750 GN=DVH24_012792 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.8e-11
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 0 

Query: 10  ASKLAADQNAVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQIQRKAQALAPHQARVL 69
           A+ L A +NAV+Q+  +QEEA EEDEAEQA+P+LDP E+RQH Q+Q + QALAPHQAR+L
Sbjct: 119 AAHLQARKNAVAQELHDQEEAGEEDEAEQAHPSLDPYEDRQHHQVQCETQALAPHQARIL 178

Query: 70  RC 72
           RC
Sbjct: 179 RC 180

[Close]
BLAST of Lcy12g017390 vs. ExPASy TrEMBL
Match: A0A2I0BCI7 (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005843 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.2e-10
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 3  VFLRPPSASKLAADQNAVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQIQRKAQALA 62
          V   PP  S     ++AV+QDFQ++EEA EEDEAEQA+P LDP E+ +H+QIQR+AQALA
Sbjct: 17 VLTEPPGCS-----EDAVAQDFQDKEEAGEEDEAEQAHPLLDPHEDGEHNQIQRQAQALA 76

Query: 63 PHQARVLR 71
          PH+ARVL+
Sbjct: 77 PHKARVLK 79

[Close]
BLAST of Lcy12g017390 vs. ExPASy TrEMBL
Match: C6SYV0 (Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 17 QNAVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQIQRKAQALAPHQARVLRCFRFIT 76
          +NAV+QD QNQEE  EEDEAEQA P LDP E+RQH Q+QR+A +LA HQA +LRC   + 
Sbjct: 21 ENAVAQDIQNQEEVGEEDEAEQAYPLLDPHEDRQHHQVQREAPSLASHQAWILRCLLCLG 80

Query: 77 SMF 80
          S++
Sbjct: 81 SVY 83

[Close]
BLAST of Lcy12g017390 vs. ExPASy TrEMBL
Match: A0A6N2M5H5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS308422 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 0 

Query: 1  MRVFLRPPSASKLAADQNAVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQIQRKAQA 60
          + V+  P S   +     AV+QD Q+QEEA EEDEAEQA+P+LDP E+RQH Q+Q +AQA
Sbjct: 3  LSVYPSPCSLCTMYVSHAAVTQDLQDQEEAGEEDEAEQAHPSLDPHEDRQHHQVQCEAQA 62

Query: 61 LAPHQARVL 70
          LAP+QARVL
Sbjct: 63 LAPYQARVL 71

[Close]
BLAST of Lcy12g017390 vs. NCBI nr
Match: KAG7031772.1 (hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-12
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 20 VSQDFQNQEEAREEDEAEQANPALDPPENRQHDQIQRKAQALAPHQARVLR 71
          VSQDFQNQEEAREEDEAEQA PALDP ENRQ+ QIQRKAQALA HQARVLR
Sbjct: 4  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 54

[Close]
BLAST of Lcy12g017390 vs. NCBI nr
Match: VVA11576.1 (unknown partial [Prunus dulcis])

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 18  NAVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQIQRKAQALAPHQARVLRCF 73
           +AV QD  NQEEA EEDEAEQA+P+LDP E+RQH Q+QR+AQALAPHQAR LRCF
Sbjct: 70  SAVPQDLHNQEEAGEEDEAEQAHPSLDPFEDRQHHQVQRQAQALAPHQARFLRCF 124

[Close]
BLAST of Lcy12g017390 vs. NCBI nr
Match: RXH73108.1 (hypothetical protein DVH24_012792, partial [Malus domestica])

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-11
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 0 

Query: 10  ASKLAADQNAVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQIQRKAQALAPHQARVL 69
           A+ L A +NAV+Q+  +QEEA EEDEAEQA+P+LDP E+RQH Q+Q + QALAPHQAR+L
Sbjct: 119 AAHLQARKNAVAQELHDQEEAGEEDEAEQAHPSLDPYEDRQHHQVQCETQALAPHQARIL 178

Query: 70  RC 72
           RC
Sbjct: 179 RC 180

[Close]
BLAST of Lcy12g017390 vs. NCBI nr
Match: PKA65509.1 (hypothetical protein AXF42_Ash005843 [Apostasia shenzhenica])

HSP 1 Score: 74.3 bits (181), Expect = 6.7e-10
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 3  VFLRPPSASKLAADQNAVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQIQRKAQALA 62
          V   PP  S     ++AV+QDFQ++EEA EEDEAEQA+P LDP E+ +H+QIQR+AQALA
Sbjct: 17 VLTEPPGCS-----EDAVAQDFQDKEEAGEEDEAEQAHPLLDPHEDGEHNQIQRQAQALA 76

Query: 63 PHQARVLR 71
          PH+ARVL+
Sbjct: 77 PHKARVLK 79

[Close]
BLAST of Lcy12g017390 vs. NCBI nr
Match: ACU14423.1 (unknown, partial [Glycine max])

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-09
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 17 QNAVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQIQRKAQALAPHQARVLRCFRFIT 76
          +NAV+QD QNQEE  EEDEAEQA P LDP E+RQH Q+QR+A +LA HQA +LRC   + 
Sbjct: 21 ENAVAQDIQNQEEVGEEDEAEQAYPLLDPHEDRQHHQVQREAPSLASHQAWILRCLLCLG 80

Query: 77 SMF 80
          S++
Sbjct: 81 SVY 83

The following BLAST results are available for this feature:
BLAST of Lcy12g017390 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy12g017390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5E4E8H27.7e-1276.36Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B001478 PE=4 SV=1[more]
A0A498HNJ33.8e-1166.13Uncharacterized protein (Fragment) OS=Malus domestica OX=3750 GN=DVH24_012792 PE... [more]
A0A2I0BCI73.2e-1061.76Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005843 P... [more]
C6SYV01.2e-0961.90Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1[more]
A0A6N2M5H51.6e-0959.42Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS308422 PE=4 SV=... [more]
BLAST of Lcy12g017390 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031772.13.2e-1290.20hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyro... [more]
VVA11576.11.6e-1176.36unknown partial [Prunus dulcis][more]
RXH73108.17.9e-1166.13hypothetical protein DVH24_012792, partial [Malus domestica][more]
PKA65509.16.7e-1061.76hypothetical protein AXF42_Ash005843 [Apostasia shenzhenica][more]
ACU14423.12.5e-0961.90unknown, partial [Glycine max][more]
BLAST of Lcy12g017390 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g017390.1Lcy12g017390.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
biological_process GO:0006520 cellular amino acid metabolic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity
molecular_function GO:0030170 pyridoxal phosphate binding