Lcy12g016900 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g016900
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	chaperone protein DnaJ-like
Location	Chr12: 44651994 .. 44652302 (+)
RNA-Seq Expression	Lcy12g016900
Synteny	Lcy12g016900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGTCGTCTTTCTTGCCATCAGCAGGTTGCTTCAATTCCACTACAGTACCAGGTAACTCAAAATCCTTCTCATTCTTGGAAAGATTTGTAGAAATTCTTGTAGTGAACTGTAAAAAACACTTGCAATTTATCGATGTTCTCATTTGGTGATCGAATTTCGTAGCTATCGGAGGTTGTAGCAATCAGAAGCTCAACCTGATCAACAATGGCTTCCGTTATTCTCCAGCTGCTCGATTCCCTCATCTAAATGGCAAGGTTCTGCTTCTACTGTTTGATTCTTGTTTACTGATTACTCGGAAATGA

mRNA sequence

ATGGCGTCGTCGTCTTTCTTGCCATCAGCAGGTTGCTTCAATTCCACTACAGTACCAGCTATCGGAGGTTGTAGCAATCAGAAGCTCAACCTGATCAACAATGGCTTCCGTTATTCTCCAGCTGCTCGATTCCCTCATCTAAATGGCAAGGTTCTGCTTCTACTGTTTGATTCTTGTTTACTGATTACTCGGAAATGA

Coding sequence (CDS)

ATGGCGTCGTCGTCTTTCTTGCCATCAGCAGGTTGCTTCAATTCCACTACAGTACCAGCTATCGGAGGTTGTAGCAATCAGAAGCTCAACCTGATCAACAATGGCTTCCGTTATTCTCCAGCTGCTCGATTCCCTCATCTAAATGGCAAGGTTCTGCTTCTACTGTTTGATTCTTGTTTACTGATTACTCGGAAATGA

Protein sequence

MASSSFLPSAGCFNSTTVPAIGGCSNQKLNLINNGFRYSPAARFPHLNGKVLLLLFDSCLLITRK

Homology

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BLAST of Lcy12g016900 vs. ExPASy TrEMBL
Match: A0A6J1D4M9 (uncharacterized protein LOC111016947 OS=Momordica charantia OX=3673 GN=LOC111016947 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-14
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1  MASSSFLPSAGCFNSTTVPAIGGCSNQKLNLINNGFRYSPAARFPHLNGK 51
          MA S+F  SAGCFNSTTV AIGGCSN KLNLI+NG  YSPAARFPHLNGK
Sbjct: 1  MAFSAFSASAGCFNSTTVKAIGGCSNHKLNLIDNGLHYSPAARFPHLNGK 50

[Close]

BLAST of Lcy12g016900 vs. ExPASy TrEMBL
Match: A0A0A0LDP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878740 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-07
Identity = 35/50 (70.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 1  MASSSFLPSAGCFNSTTV--PAIGGCSNQKLNLINNGFR-YSPAARFPHL 48
          MASSSF PSA CF+STT     I  CSNQKLNLI+NGF  YS  ARFPHL
Sbjct: 1  MASSSFSPSANCFSSTTTLSAIIRDCSNQKLNLIHNGFHDYSSPARFPHL 50

[Close]

BLAST of Lcy12g016900 vs. ExPASy TrEMBL
Match: A0A5D3E725 (Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007410 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 1  MASSSFLPSAGCFNS-TTVPAIGGCSNQKLNLINNGFR-YSPAARFPHL 48
          MASSSF  SA CF+S TT+ A+  CSNQKLNLI+NGF  YS  ARFPHL
Sbjct: 1  MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHL 49

[Close]

BLAST of Lcy12g016900 vs. ExPASy TrEMBL
Match: A0A1S3CSH4 (chaperone protein DnaJ-like OS=Cucumis melo OX=3656 GN=LOC103503827 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 1  MASSSFLPSAGCFNS-TTVPAIGGCSNQKLNLINNGFR-YSPAARFPHL 48
          MASSSF  SA CF+S TT+ A+  CSNQKLNLI+NGF  YS  ARFPHL
Sbjct: 1  MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHL 49

[Close]

BLAST of Lcy12g016900 vs. ExPASy TrEMBL
Match: A0A5A7TB44 (Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003640 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-06
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 1  MASSSFLPSAGCFNS-TTVPAIGGCSNQKLNLINNGFR-YSPAARFPHL 48
          MASSSF  SA CF+S TT+ AI  CSNQKLNLI+N F  YS  ARFPHL
Sbjct: 1  MASSSFSLSANCFSSTTTLSAIRDCSNQKLNLIHNAFHDYSSPARFPHL 49

[Close]

BLAST of Lcy12g016900 vs. NCBI nr
Match: XP_022148277.1 (uncharacterized protein LOC111016947 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 4.9e-14
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1  MASSSFLPSAGCFNSTTVPAIGGCSNQKLNLINNGFRYSPAARFPHLNGK 51
          MA S+F  SAGCFNSTTV AIGGCSN KLNLI+NG  YSPAARFPHLNGK
Sbjct: 1  MAFSAFSASAGCFNSTTVKAIGGCSNHKLNLIDNGLHYSPAARFPHLNGK 50

[Close]

BLAST of Lcy12g016900 vs. NCBI nr
Match: XP_038899028.1 (protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1  MASSSFLPSAGCF-NSTTVPAIGGCSNQKLNLINNGF-RYSPAARFPHLNGK 51
          MASSSF  SA CF +STT+ AI G SNQKLNL+NNGF  YS  ARFPHLN K
Sbjct: 1  MASSSFSASANCFSSSTTISAIRGSSNQKLNLVNNGFYDYSSPARFPHLNIK 52

[Close]

BLAST of Lcy12g016900 vs. NCBI nr
Match: XP_031737825.1 (uncharacterized protein LOC101218754 isoform X1 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 9.8e-07
Identity = 35/50 (70.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 1  MASSSFLPSAGCFNSTTV--PAIGGCSNQKLNLINNGFR-YSPAARFPHL 48
          MASSSF PSA CF+STT     I  CSNQKLNLI+NGF  YS  ARFPHL
Sbjct: 1  MASSSFSPSANCFSSTTTLSAIIRDCSNQKLNLIHNGFHDYSSPARFPHL 50

[Close]

BLAST of Lcy12g016900 vs. NCBI nr
Match: XP_004136477.1 (protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic isoform X2 [Cucumis sativus] >KGN60105.1 hypothetical protein Csa_001346 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 9.8e-07
Identity = 35/50 (70.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 1  MASSSFLPSAGCFNSTTV--PAIGGCSNQKLNLINNGFR-YSPAARFPHL 48
          MASSSF PSA CF+STT     I  CSNQKLNLI+NGF  YS  ARFPHL
Sbjct: 1  MASSSFSPSANCFSSTTTLSAIIRDCSNQKLNLIHNGFHDYSSPARFPHL 50

[Close]

BLAST of Lcy12g016900 vs. NCBI nr
Match: XP_008466412.1 (PREDICTED: chaperone protein DnaJ-like [Cucumis melo] >TYK31430.1 chaperone protein DnaJ-like [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-06
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 1  MASSSFLPSAGCFNS-TTVPAIGGCSNQKLNLINNGFR-YSPAARFPHL 48
          MASSSF  SA CF+S TT+ A+  CSNQKLNLI+NGF  YS  ARFPHL
Sbjct: 1  MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHL 49

The following BLAST results are available for this feature:

BLAST of Lcy12g016900 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g016900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4M9	2.4e-14	82.00	uncharacterized protein LOC111016947 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A0A0LDP8	4.8e-07	70.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878740 PE=4 SV=1	[more]
A0A5D3E725	1.8e-06	69.39	Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3CSH4	1.8e-06	69.39	chaperone protein DnaJ-like OS=Cucumis melo OX=3656 GN=LOC103503827 PE=4 SV=1	[more]
A0A5A7TB44	5.3e-06	69.39	Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Lcy12g016900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148277.1	4.9e-14	82.00	uncharacterized protein LOC111016947 [Momordica charantia]	[more]
XP_038899028.1	1.2e-07	71.15	protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic-like [Benincasa hispida]	[more]
XP_031737825.1	9.8e-07	70.00	uncharacterized protein LOC101218754 isoform X1 [Cucumis sativus]	[more]
XP_004136477.1	9.8e-07	70.00	protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic isoform X2 [Cucumis sativus] >K...	[more]
XP_008466412.1	3.7e-06	69.39	PREDICTED: chaperone protein DnaJ-like [Cucumis melo] >TYK31430.1 chaperone prot...	[more]

BLAST of Lcy12g016900 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g016900.1	Lcy12g016900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061077	chaperone-mediated protein folding
cellular_component	GO:0101031	chaperone complex
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0044183	protein folding chaperone