Lcy12g016290 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g016290
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionrust resistance kinase Lr10-like
LocationChr12: 44209405 .. 44210667 (-)
RNA-Seq ExpressionLcy12g016290
SyntenyLcy12g016290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCACTCTTCAGACCATAAATCCACTCTCTCTCTCAAAATCCCCTGCCAGTTTCAATCGCATTCAGATTTCTGGAGGAATGATTGCAATAGCCCTGTTATGCCAGTAAGTAATCTGCGGCTCTATTGAATCGAGAAATGTTATTCACCAATTTCTTTGTAATGTCGGTTTGCAAATGATGCATCTCAGTCCAATTTCGTGTCTGTATTGTTATTAACCTTTGTTTCTCTCAGATTCTCCTTACCTCCAGAGCCGCTGTTTGAATTCGACATACCTCCATTGCCGTCGAACTTCGGCGATGGCAACAACGGTGGCGACCGCAGAGGAAATCTATCTATTCGCACTATTGCTATCCGTAAGCATACTATATCTCTTATCTTGTTGACATTAATGGCAGTTCCACAAACTTCCGTTGAACAGTAGGGTGCTACTGCTGTGTATTTTGAAGCCGAGAGGTTTCTTCTGCTCTGAAAATCAAAGAAACATTTTAATTTTTTCAGATTTGTTTTTCTTTTGGACAAATTACATGCATCGTTGTGTAAATTGAAAGGGATTTTGGGTTGAGAAGGTATATGTTTACTTCTAGAACATCGTGAAAAACTTAAGAAGTCTAATGAACAATCGTGAACAAAATTCTGAGGAAAGGATGAAATCTGGAATGGGGAGCTATTTTTGGGGCTCCGAAATATCCTAGGGCTTTAATATTGTTCTTCGTTGTATTCCGATTATCAAAAAAAAAAGAATAAACACAAATTTTTTCGACCCATTTGTAATGAGCCAAACTTCCATTTTCTAACTTAAATGATTTCATTTTAGGCTTCAATTTCTTGTTAACTCGACTATCATTTTGAGCAAGTAAATACTAAGTTTTGGTCAACGTGTTTGAACATGTTTTGACTAAATTCTATTTCATGTATGGAGTAGGACCATAACCATGCCAATTTCTCCAGTAGATATCACCAGCTGAACCAATTTTTAATTTGCAGCTGGAGCTGCGATATTCTTGTTACTTCTTGTGGTAGTCTTATATTGGTGGTGTTCCAAGAGAGATGCATACATTGCAAGACAGTCGAACTTGAACTACGTCGCCCCTAACATGGATGCTGCAGTTATTTGGGAAGCTGATGCACCAACAATGCAGAAATTCTTTAGGGAGATAGCCGAAGTAAAACTAGTCACATTCACTGCTCAGCAACTCTATACCTTCACAAGTAACTACTCAACACGACTTGGTTCTGGAGGCTTTGGTGAGGTTTACTAA

mRNA sequence

ATGATCACTCTTCAGACCATAAATCCACTCTCTCTCTCAAAATCCCCTGCCAGTTTCAATCGCATTCAGATTTCTGGAGGAATGATTGCAATAGCCCTGTTATGCCAATTCTCCTTACCTCCAGAGCCGCTGTTTGAATTCGACATACCTCCATTGCCGTCGAACTTCGGCGATGGCAACAACGGTGGCGACCGCAGAGGAAATCTATCTATTCGCACTATTGCTATCCCTGGAGCTGCGATATTCTTGTTACTTCTTGTGGTAGTCTTATATTGGTGGTGTTCCAAGAGAGATGCATACATTGCAAGACAGTCGAACTTGAACTACGTCGCCCCTAACATGGATGCTGCAGTTATTTGGGAAGCTGATGCACCAACAATGCAGAAATTCTTTAGGGAGATAGCCGAAGTAAAACTAGTCACATTCACTGCTCAGCAACTCTATACCTTCACAAGTAACTACTCAACACGACTTGGTTCTGGAGGCTTTGGTGAGGTTTACTAA

Coding sequence (CDS)

ATGATCACTCTTCAGACCATAAATCCACTCTCTCTCTCAAAATCCCCTGCCAGTTTCAATCGCATTCAGATTTCTGGAGGAATGATTGCAATAGCCCTGTTATGCCAATTCTCCTTACCTCCAGAGCCGCTGTTTGAATTCGACATACCTCCATTGCCGTCGAACTTCGGCGATGGCAACAACGGTGGCGACCGCAGAGGAAATCTATCTATTCGCACTATTGCTATCCCTGGAGCTGCGATATTCTTGTTACTTCTTGTGGTAGTCTTATATTGGTGGTGTTCCAAGAGAGATGCATACATTGCAAGACAGTCGAACTTGAACTACGTCGCCCCTAACATGGATGCTGCAGTTATTTGGGAAGCTGATGCACCAACAATGCAGAAATTCTTTAGGGAGATAGCCGAAGTAAAACTAGTCACATTCACTGCTCAGCAACTCTATACCTTCACAAGTAACTACTCAACACGACTTGGTTCTGGAGGCTTTGGTGAGGTTTACTAA

Protein sequence

MITLQTINPLSLSKSPASFNRIQISGGMIAIALLCQFSLPPEPLFEFDIPPLPSNFGDGNNGGDRRGNLSIRTIAIPGAAIFLLLLVVVLYWWCSKRDAYIARQSNLNYVAPNMDAAVIWEADAPTMQKFFREIAEVKLVTFTAQQLYTFTSNYSTRLGSGGFGEVY
Homology
[Close]
BLAST of Lcy12g016290 vs. ExPASy TrEMBL
Match: A0A6J1C5Q2 (rust resistance kinase Lr10-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008202 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.5e-20
Identity = 71/149 (47.65%), Postives = 86/149 (57.72%), Query Frame = 0 

Query: 28  MIAIALLCQFSLPPEPLFEFDIPPLPSNFGDGNNGGDRRGNLSIRTIAIPGAAIFLLLLV 87
           MI IALLCQFS P  P           +FG G N  +     ++  + + G+ I LL+L 
Sbjct: 1   MIGIALLCQFSPPDAP-----------DFGGGGNPAN-----TLVALYVVGSVISLLVLA 60

Query: 88  ---VVLYWWCSKRDAYIARQ-SNLN-----YVAPNMDAAVIWEADAPTMQKFFREIAEVK 147
              +  Y +       + R+  N+N        PNM  AV WE DAPTM+KFF+EIAE K
Sbjct: 61  GIGISAYKFAKAATPGVVRELRNINTPPPPVPFPNMAPAVPWEVDAPTMEKFFQEIAEEK 120

Query: 148 LVTFTAQQLYTFTSNYSTRLGSGGFGEVY 168
            V FTAQQLY FTSNYSTRLGSGGFGEVY
Sbjct: 121 PVRFTAQQLYNFTSNYSTRLGSGGFGEVY 133

[Close]
BLAST of Lcy12g016290 vs. ExPASy TrEMBL
Match: A0A6J1FJD4 (rust resistance kinase Lr10-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111445900 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.8e-18
Identity = 71/151 (47.02%), Postives = 85/151 (56.29%), Query Frame = 0 

Query: 28  MIAIALLCQFSLPPEPLFEFDIPPLPSNFGDGNNGGDRRGNLSIRTIAIPGAAIFLLLLV 87
           MI IALLCQFS PP+    F  P    N              S+  + + G+ + LL+  
Sbjct: 1   MIEIALLCQFS-PPDS--SFTSPEKAFN--------------SMIILYVVGSVVSLLVFG 60

Query: 88  VV---LYWWCSKRDAYIARQSNLNYVAPNMDAA--------VIWEADAPTMQKFFREIAE 147
           V+   LY +  K    + R+     VAP +  A        VIWEADAPTM+KFFREIAE
Sbjct: 61  VIGICLYKFVKKATPDVVRELRNITVAPPLAPAPHVSLPPPVIWEADAPTMEKFFREIAE 120

Query: 148 VKLVTFTAQQLYTFTSNYSTRLGSGGFGEVY 168
            K V FTA  LY+FTSNYSTRLGSGGFGEVY
Sbjct: 121 EKPVRFTAPDLYSFTSNYSTRLGSGGFGEVY 134

[Close]
BLAST of Lcy12g016290 vs. ExPASy TrEMBL
Match: A0A6J1J3N3 (rust resistance kinase Lr10-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481045 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.9e-18
Identity = 70/151 (46.36%), Postives = 84/151 (55.63%), Query Frame = 0 

Query: 28  MIAIALLCQFSLPPEPLFEFDIPPLPSNFGDGNNGGDRRGNLSIRTIAIPGAAIFLLLLV 87
           MI IALLCQFS PP+    F  P    N              S+  + + G  + LL+  
Sbjct: 1   MIEIALLCQFS-PPDS--SFTSPEKAFN--------------SMIILYVVGLVVSLLVFG 60

Query: 88  VV---LYWWCSKRDAYIARQSNLNYVAPNMDAA--------VIWEADAPTMQKFFREIAE 147
           V+   LY +  K    + R+     +AP +  A        VIWEADAPTM+KFFREIAE
Sbjct: 61  VIGICLYKFVKKATPDVVRELRNITLAPPLAPAPHVSLPPPVIWEADAPTMEKFFREIAE 120

Query: 148 VKLVTFTAQQLYTFTSNYSTRLGSGGFGEVY 168
            K V FTA  LY+FTSNYSTRLGSGGFGEVY
Sbjct: 121 EKPVRFTAPDLYSFTSNYSTRLGSGGFGEVY 134

[Close]
BLAST of Lcy12g016290 vs. ExPASy TrEMBL
Match: A0A6J1FNM6 (rust resistance kinase Lr10-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445900 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 68/151 (45.03%), Postives = 85/151 (56.29%), Query Frame = 0 

Query: 28  MIAIALLCQFSLPPEPLFEFDIPPLPSNFGDGNNGGDRRGNLSIRTIAIPGAAIFLLLLV 87
           MI IALLCQ     + +F    PP      D +     +   S+  + + G+ + LL+  
Sbjct: 1   MIEIALLCQ----SDWMFS---PP------DSSFTSPEKAFNSMIILYVVGSVVSLLVFG 60

Query: 88  VV---LYWWCSKRDAYIARQSNLNYVAPNMDAA--------VIWEADAPTMQKFFREIAE 147
           V+   LY +  K    + R+     VAP +  A        VIWEADAPTM+KFFREIAE
Sbjct: 61  VIGICLYKFVKKATPDVVRELRNITVAPPLAPAPHVSLPPPVIWEADAPTMEKFFREIAE 120

Query: 148 VKLVTFTAQQLYTFTSNYSTRLGSGGFGEVY 168
            K V FTA  LY+FTSNYSTRLGSGGFGEVY
Sbjct: 121 EKPVRFTAPDLYSFTSNYSTRLGSGGFGEVY 138

[Close]
BLAST of Lcy12g016290 vs. ExPASy TrEMBL
Match: A0A1S3CQY1 (rust resistance kinase Lr10-like OS=Cucumis melo OX=3656 GN=LOC103503761 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 70/171 (40.94%), Postives = 85/171 (49.71%), Query Frame = 0 

Query: 28  MIAIALLCQFSLPPEPLFEFDIPPLPSNFGDGNNGGDRRGNLSIRTIAIPGAAIFLLLLV 87
           MI IALLCQ S+          PP P  FGD N         SI  + + G+ + L++ V
Sbjct: 1   MIEIALLCQSSIS-------QFPPNPPGFGDDN------PVKSITILWVVGSVVSLVVFV 60

Query: 88  VVLYWWCSKRDAYIARQSNL----NYVAP---------------------------NMDA 147
           V+    C+ + A  A    +    N  AP                           +  +
Sbjct: 61  VIAI--CALKFAKSAAPGVVRELRNITAPPVVIAAPPVTVPYRTAPPRNASPSPELSTAS 120

Query: 148 AVIWEADAPTMQKFFREIAEVKLVTFTAQQLYTFTSNYSTRLGSGGFGEVY 168
           A IW  DAPTM+KFFR+IAE K V FTA QLYTFTSNYSTRLGSGGFGEVY
Sbjct: 121 AAIWRVDAPTMEKFFRKIAEEKPVRFTADQLYTFTSNYSTRLGSGGFGEVY 156

[Close]
BLAST of Lcy12g016290 vs. NCBI nr
Match: XP_022136517.1 (rust resistance kinase Lr10-like isoform X1 [Momordica charantia])

HSP 1 Score: 108.6 bits (270), Expect = 5.2e-20
Identity = 71/149 (47.65%), Postives = 86/149 (57.72%), Query Frame = 0 

Query: 28  MIAIALLCQFSLPPEPLFEFDIPPLPSNFGDGNNGGDRRGNLSIRTIAIPGAAIFLLLLV 87
           MI IALLCQFS P  P           +FG G N  +     ++  + + G+ I LL+L 
Sbjct: 1   MIGIALLCQFSPPDAP-----------DFGGGGNPAN-----TLVALYVVGSVISLLVLA 60

Query: 88  ---VVLYWWCSKRDAYIARQ-SNLN-----YVAPNMDAAVIWEADAPTMQKFFREIAEVK 147
              +  Y +       + R+  N+N        PNM  AV WE DAPTM+KFF+EIAE K
Sbjct: 61  GIGISAYKFAKAATPGVVRELRNINTPPPPVPFPNMAPAVPWEVDAPTMEKFFQEIAEEK 120

Query: 148 LVTFTAQQLYTFTSNYSTRLGSGGFGEVY 168
            V FTAQQLY FTSNYSTRLGSGGFGEVY
Sbjct: 121 PVRFTAQQLYNFTSNYSTRLGSGGFGEVY 133

[Close]
BLAST of Lcy12g016290 vs. NCBI nr
Match: KAG6608199.1 (PR5-like receptor kinase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-18
Identity = 75/169 (44.38%), Postives = 93/169 (55.03%), Query Frame = 0 

Query: 10  LSLSKSPASFNRIQISGGMIAIALLCQFSLPPEPLFEFDIPPLPSNFGDGNNGGDRRGNL 69
           L+L    AS  RIQ    MI IALLCQ     + +F    PP      D +     +   
Sbjct: 360 LTLGTLAASPKRIQRRREMIEIALLCQ----SDWMFS---PP------DSSFTSPEKAFN 419

Query: 70  SIRTIAIPGAAIFLLLLVVV---LYWWCSKRDAYIARQSNLNYVAPNMDAA--------V 129
           S+  + + G+ + LL+  V+   LY +  K    + R+     VAP +  A        V
Sbjct: 420 SMIILYVVGSVVSLLVFGVIGICLYKFVKKATPDVVRELRNITVAPPLAPAPHVSLPPPV 479

Query: 130 IWEADAPTMQKFFREIAEVKLVTFTAQQLYTFTSNYSTRLGSGGFGEVY 168
           IWEADAPTM+KFFREIAE K V FTA  LY+FTSNYSTRLGSGGFGEVY
Sbjct: 480 IWEADAPTMEKFFREIAEEKPVRFTAPDLYSFTSNYSTRLGSGGFGEVY 515

[Close]
BLAST of Lcy12g016290 vs. NCBI nr
Match: XP_022940204.1 (rust resistance kinase Lr10-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-18
Identity = 71/151 (47.02%), Postives = 85/151 (56.29%), Query Frame = 0 

Query: 28  MIAIALLCQFSLPPEPLFEFDIPPLPSNFGDGNNGGDRRGNLSIRTIAIPGAAIFLLLLV 87
           MI IALLCQFS PP+    F  P    N              S+  + + G+ + LL+  
Sbjct: 1   MIEIALLCQFS-PPDS--SFTSPEKAFN--------------SMIILYVVGSVVSLLVFG 60

Query: 88  VV---LYWWCSKRDAYIARQSNLNYVAPNMDAA--------VIWEADAPTMQKFFREIAE 147
           V+   LY +  K    + R+     VAP +  A        VIWEADAPTM+KFFREIAE
Sbjct: 61  VIGICLYKFVKKATPDVVRELRNITVAPPLAPAPHVSLPPPVIWEADAPTMEKFFREIAE 120

Query: 148 VKLVTFTAQQLYTFTSNYSTRLGSGGFGEVY 168
            K V FTA  LY+FTSNYSTRLGSGGFGEVY
Sbjct: 121 EKPVRFTAPDLYSFTSNYSTRLGSGGFGEVY 134

[Close]
BLAST of Lcy12g016290 vs. NCBI nr
Match: XP_022982104.1 (rust resistance kinase Lr10-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-17
Identity = 70/151 (46.36%), Postives = 84/151 (55.63%), Query Frame = 0 

Query: 28  MIAIALLCQFSLPPEPLFEFDIPPLPSNFGDGNNGGDRRGNLSIRTIAIPGAAIFLLLLV 87
           MI IALLCQFS PP+    F  P    N              S+  + + G  + LL+  
Sbjct: 1   MIEIALLCQFS-PPDS--SFTSPEKAFN--------------SMIILYVVGLVVSLLVFG 60

Query: 88  VV---LYWWCSKRDAYIARQSNLNYVAPNMDAA--------VIWEADAPTMQKFFREIAE 147
           V+   LY +  K    + R+     +AP +  A        VIWEADAPTM+KFFREIAE
Sbjct: 61  VIGICLYKFVKKATPDVVRELRNITLAPPLAPAPHVSLPPPVIWEADAPTMEKFFREIAE 120

Query: 148 VKLVTFTAQQLYTFTSNYSTRLGSGGFGEVY 168
            K V FTA  LY+FTSNYSTRLGSGGFGEVY
Sbjct: 121 EKPVRFTAPDLYSFTSNYSTRLGSGGFGEVY 134

[Close]
BLAST of Lcy12g016290 vs. NCBI nr
Match: XP_022940202.1 (rust resistance kinase Lr10-like isoform X1 [Cucurbita moschata] >XP_022940203.1 rust resistance kinase Lr10-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-16
Identity = 68/151 (45.03%), Postives = 85/151 (56.29%), Query Frame = 0 

Query: 28  MIAIALLCQFSLPPEPLFEFDIPPLPSNFGDGNNGGDRRGNLSIRTIAIPGAAIFLLLLV 87
           MI IALLCQ     + +F    PP      D +     +   S+  + + G+ + LL+  
Sbjct: 1   MIEIALLCQ----SDWMFS---PP------DSSFTSPEKAFNSMIILYVVGSVVSLLVFG 60

Query: 88  VV---LYWWCSKRDAYIARQSNLNYVAPNMDAA--------VIWEADAPTMQKFFREIAE 147
           V+   LY +  K    + R+     VAP +  A        VIWEADAPTM+KFFREIAE
Sbjct: 61  VIGICLYKFVKKATPDVVRELRNITVAPPLAPAPHVSLPPPVIWEADAPTMEKFFREIAE 120

Query: 148 VKLVTFTAQQLYTFTSNYSTRLGSGGFGEVY 168
            K V FTA  LY+FTSNYSTRLGSGGFGEVY
Sbjct: 121 EKPVRFTAPDLYSFTSNYSTRLGSGGFGEVY 138

The following BLAST results are available for this feature:
BLAST of Lcy12g016290 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy12g016290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C5Q22.5e-2047.65rust resistance kinase Lr10-like isoform X1 OS=Momordica charantia OX=3673 GN=LO... [more]
A0A6J1FJD41.8e-1847.02rust resistance kinase Lr10-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1J3N36.9e-1846.36rust resistance kinase Lr10-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1FNM61.3e-1645.03rust resistance kinase Lr10-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A1S3CQY11.3e-1640.94rust resistance kinase Lr10-like OS=Cucumis melo OX=3656 GN=LOC103503761 PE=3 SV... [more]
BLAST of Lcy12g016290 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136517.15.2e-2047.65rust resistance kinase Lr10-like isoform X1 [Momordica charantia][more]
KAG6608199.13.8e-1844.38PR5-like receptor kinase, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022940204.13.8e-1847.02rust resistance kinase Lr10-like isoform X3 [Cucurbita moschata][more]
XP_022982104.11.4e-1746.36rust resistance kinase Lr10-like isoform X1 [Cucurbita maxima][more]
XP_022940202.12.7e-1645.03rust resistance kinase Lr10-like isoform X1 [Cucurbita moschata] >XP_022940203.1... [more]
BLAST of Lcy12g016290 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g016290.1Lcy12g016290.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity