Lcy12g015770 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g015770
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr12: 43712378 .. 43712752 (-)
RNA-Seq Expression	Lcy12g015770
Synteny	Lcy12g015770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTCGATCGATCGAGCGACTTTGCGCCCTCTCGGAAAGCCGAGTTCGCGATAGAGCTTGCCAGCGTCGTCGAGGCGAAGAACGTGCTCCGGCTGCTTGGAGAGAAAATCCTTGGACTTAAAAAGGAACCTGAAGAAGGAATCGGTTTCGACGATGCGCTCGAAGTGAGAGATGCGATTGGATTCGGATTGGACGAGCTTGGTTCTGGGGCTTTCGTGCTTCTTGTTGCGTTTCTTCTTGAACTTTTTGGGGAGTTTGGTGACGAGGAAGGAGGTGGAAAATTGGGATGTGAAGAGGAAACGATGAGGTTGAGGGAGATGCAATTTCTGGTCGGAGAAGGAAGCGGAGGAATGGCGGAGGGTTTTTGTTAG

mRNA sequence

ATGGCGCTCGATCGATCGAGCGACTTTGCGCCCTCTCGGAAAGCCGAGTTCGCGATAGAGCTTGCCAGCGTCGTCGAGGCGAAGAACGTGCTCCGGCTGCTTGGAGAGAAAATCCTTGGACTTAAAAAGGAACCTGAAGAAGGAATCGGTTTCGACGATGCGCTCGAAGTGAGAGATGCGATTGGATTCGGATTGGACGAGCTTGGTTCTGGGGCTTTCGTGCTTCTTGTTGCGTTTCTTCTTGAACTTTTTGGGGAGTTTGGTGACGAGGAAGGAGGTGGAAAATTGGGATGTGAAGAGGAAACGATGAGGTTGAGGGAGATGCAATTTCTGGTCGGAGAAGGAAGCGGAGGAATGGCGGAGGGTTTTTGTTAG

Coding sequence (CDS)

ATGGCGCTCGATCGATCGAGCGACTTTGCGCCCTCTCGGAAAGCCGAGTTCGCGATAGAGCTTGCCAGCGTCGTCGAGGCGAAGAACGTGCTCCGGCTGCTTGGAGAGAAAATCCTTGGACTTAAAAAGGAACCTGAAGAAGGAATCGGTTTCGACGATGCGCTCGAAGTGAGAGATGCGATTGGATTCGGATTGGACGAGCTTGGTTCTGGGGCTTTCGTGCTTCTTGTTGCGTTTCTTCTTGAACTTTTTGGGGAGTTTGGTGACGAGGAAGGAGGTGGAAAATTGGGATGTGAAGAGGAAACGATGAGGTTGAGGGAGATGCAATTTCTGGTCGGAGAAGGAAGCGGAGGAATGGCGGAGGGTTTTTGTTAG

Protein sequence

MALDRSSDFAPSRKAEFAIELASVVEAKNVLRLLGEKILGLKKEPEEGIGFDDALEVRDAIGFGLDELGSGAFVLLVAFLLELFGEFGDEEGGGKLGCEEETMRLREMQFLVGEGSGGMAEGFC

Homology

[Close]

BLAST of Lcy12g015770 vs. ExPASy TrEMBL
Match: A0A5D3E6P3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006150 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.5e-28
Identity = 71/95 (74.74%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1  MALDRSSDFAPSRKAEFAIELASVVEAKNVLRLLGEKILGLKKEPEEGIGFDDALEVRDA 60
          MA +RSSDFA S KA+FAI+LA ++E KNVLRLLG++ILGLKKE EEGIG +DALEVR+A
Sbjct: 1  MAFNRSSDFATSWKAKFAIKLAGIIETKNVLRLLGKEILGLKKESEEGIGLEDALEVRNA 60

Query: 61 IGFGLDELGSGAFVLLVAFLLELFGEFGDEEGGGK 96
          IGFGL+ELGS AFVLL AFL E  G+FGDEEGGG+
Sbjct: 61 IGFGLNELGSRAFVLL-AFLPEFLGQFGDEEGGGE 94

[Close]

BLAST of Lcy12g015770 vs. ExPASy TrEMBL
Match: A0A0A0LHJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889730 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1   MALDRSSDFAPSRKAEFAIELASVVEAKNVLRLLGEKILGLKKEPEEGIGFDDALEVRDA 60
           MA +RSSDFA S KA+FAIELA ++E KN+LRLLGEKILG KKE E+GI  +DALEVR+A
Sbjct: 133 MAFNRSSDFATSWKAKFAIELAGIIETKNMLRLLGEKILGFKKESEDGISLEDALEVRNA 192

Query: 61  IGFGLDELGSGAFVLLVAFLLELFGEFGDEEGGG 95
           I FGLDELGS A V L AFL E  GEFGDEEGGG
Sbjct: 193 IRFGLDELGSRAIVFL-AFLPEFLGEFGDEEGGG 225

[Close]

BLAST of Lcy12g015770 vs. ExPASy TrEMBL
Match: A0A2P5BNH1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_314870 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.5e-21
Identity = 60/118 (50.85%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 1   MALDRSSDFAPSRKAEFAIELASVVEAKNVLRLLGEKILGLKKEPEEGIGFDDALEVRDA 60
           MALD     + + ++E A+EL+ +VEA+NV+ LLGE++LG  +E EEG+  DDAL+  D+
Sbjct: 133 MALDEPCHLSSTGESELAVELSGIVEAENVVGLLGEELLGPDEESEEGVTLDDALQRWDS 192

Query: 61  IGFGLDELGSGAFVLLVAFLLELFGEFGDEEGGGKLGCEE-ETMRLREMQFLVGEGSG 118
           IG GLD+LGS AF LL+  L E F  FGDEEGGG++G EE E +R+ E  + V +G G
Sbjct: 193 IGLGLDQLGSRAF-LLLPLLPEFFRGFGDEEGGGEMGSEEGEVIRVLERSYRVEDGEG 249

[Close]

BLAST of Lcy12g015770 vs. ExPASy TrEMBL
Match: A0A2P5BF08 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_244610 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.2e-20
Identity = 59/118 (50.00%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 1   MALDRSSDFAPSRKAEFAIELASVVEAKNVLRLLGEKILGLKKEPEEGIGFDDALEVRDA 60
           MALD     + + ++E A+EL+ +V+A+NV+ LLGE++LG  +E EEG+  DDAL+  D+
Sbjct: 133 MALDEPCHLSSTGESELAVELSGIVKAENVVGLLGEELLGPDEESEEGVTLDDALQCWDS 192

Query: 61  IGFGLDELGSGAFVLLVAFLLELFGEFGDEEGGGKLGCEE-ETMRLREMQFLVGEGSG 118
           IG GLD+LGS AF LL+  L E F  FGDEEGGG++G EE E +R+ E    V +G G
Sbjct: 193 IGLGLDQLGSRAF-LLLPLLPEFFRGFGDEEGGGEMGSEEGEVIRVLERSSWVEDGEG 249

[Close]

BLAST of Lcy12g015770 vs. ExPASy TrEMBL
Match: A0A5J5BF67 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_024744 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.3e-08
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 1   MALDRSSDFAPSRKAEFAIELASVVEAKNVLRLLGEKILGLKKEPEEGIGFDDALEVRDA 60
           +AL R+  FA + KA+  +ELA +VEA++V  LLGE+I G  +E  EG+  DD  EV +A
Sbjct: 282 VALYRAEHFAAAGKAKLPVELAGIVEAEDVFGLLGEEIFGFGEE-FEGVALDDVFEVGEA 341

Query: 61  IGFGLDELGSGA 73
            GF LDE GSGA
Sbjct: 342 AGFVLDEFGSGA 352

[Close]

BLAST of Lcy12g015770 vs. NCBI nr
Match: KAA0038704.1 (hypothetical protein E6C27_scaffold92G002480 [Cucumis melo var. makuwa] >TYK31316.1 hypothetical protein E5676_scaffold455G006150 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 5.1e-28
Identity = 71/95 (74.74%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1  MALDRSSDFAPSRKAEFAIELASVVEAKNVLRLLGEKILGLKKEPEEGIGFDDALEVRDA 60
          MA +RSSDFA S KA+FAI+LA ++E KNVLRLLG++ILGLKKE EEGIG +DALEVR+A
Sbjct: 1  MAFNRSSDFATSWKAKFAIKLAGIIETKNVLRLLGKEILGLKKESEEGIGLEDALEVRNA 60

Query: 61 IGFGLDELGSGAFVLLVAFLLELFGEFGDEEGGGK 96
          IGFGL+ELGS AFVLL AFL E  G+FGDEEGGG+
Sbjct: 61 IGFGLNELGSRAFVLL-AFLPEFLGQFGDEEGGGE 94

[Close]

BLAST of Lcy12g015770 vs. NCBI nr
Match: PON50357.1 (hypothetical protein TorRG33x02_314870 [Trema orientale])

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-20
Identity = 60/118 (50.85%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 1   MALDRSSDFAPSRKAEFAIELASVVEAKNVLRLLGEKILGLKKEPEEGIGFDDALEVRDA 60
           MALD     + + ++E A+EL+ +VEA+NV+ LLGE++LG  +E EEG+  DDAL+  D+
Sbjct: 133 MALDEPCHLSSTGESELAVELSGIVEAENVVGLLGEELLGPDEESEEGVTLDDALQRWDS 192

Query: 61  IGFGLDELGSGAFVLLVAFLLELFGEFGDEEGGGKLGCEE-ETMRLREMQFLVGEGSG 118
           IG GLD+LGS AF LL+  L E F  FGDEEGGG++G EE E +R+ E  + V +G G
Sbjct: 193 IGLGLDQLGSRAF-LLLPLLPEFFRGFGDEEGGGEMGSEEGEVIRVLERSYRVEDGEG 249

[Close]

BLAST of Lcy12g015770 vs. NCBI nr
Match: PON47377.1 (hypothetical protein PanWU01x14_244610 [Parasponia andersonii])

HSP 1 Score: 107.5 bits (267), Expect = 8.7e-20
Identity = 59/118 (50.00%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 1   MALDRSSDFAPSRKAEFAIELASVVEAKNVLRLLGEKILGLKKEPEEGIGFDDALEVRDA 60
           MALD     + + ++E A+EL+ +V+A+NV+ LLGE++LG  +E EEG+  DDAL+  D+
Sbjct: 133 MALDEPCHLSSTGESELAVELSGIVKAENVVGLLGEELLGPDEESEEGVTLDDALQCWDS 192

Query: 61  IGFGLDELGSGAFVLLVAFLLELFGEFGDEEGGGKLGCEE-ETMRLREMQFLVGEGSG 118
           IG GLD+LGS AF LL+  L E F  FGDEEGGG++G EE E +R+ E    V +G G
Sbjct: 193 IGLGLDQLGSRAF-LLLPLLPEFFRGFGDEEGGGEMGSEEGEVIRVLERSSWVEDGEG 249

[Close]

BLAST of Lcy12g015770 vs. NCBI nr
Match: KAA8540337.1 (hypothetical protein F0562_024744 [Nyssa sinensis])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 1   MALDRSSDFAPSRKAEFAIELASVVEAKNVLRLLGEKILGLKKEPEEGIGFDDALEVRDA 60
           +AL R+  FA + KA+  +ELA +VEA++V  LLGE+I G  +E  EG+  DD  EV +A
Sbjct: 282 VALYRAEHFAAAGKAKLPVELAGIVEAEDVFGLLGEEIFGFGEE-FEGVALDDVFEVGEA 341

Query: 61  IGFGLDELGSGA 73
            GF LDE GSGA
Sbjct: 342 AGFVLDEFGSGA 352

[Close]

BLAST of Lcy12g015770 vs. NCBI nr
Match: KAA8515759.1 (hypothetical protein F0562_018630 [Nyssa sinensis])

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-05
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1   MALDRSSDFAPSRKAEFAIELASVVEAKNVLRLLGEKILGLKKEPEEGIGFDDALEVRDA 60
           + L R+  FA + KA+  +EL  VVEA++V  LL E+I G  +E  EG+  D+  EV +A
Sbjct: 41  VVLYRAEHFAAAGKAKLPVELVGVVEAEDVFGLLREEIFGFGEE-FEGVALDNMFEVGEA 100

Query: 61  IGFGLDELGSGA 73
            GF LDE GSGA
Sbjct: 101 AGFVLDEFGSGA 111

The following BLAST results are available for this feature:

BLAST of Lcy12g015770 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g015770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E6P3	2.5e-28	74.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LHJ5	1.3e-26	73.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889730 PE=4 SV=1	[more]
A0A2P5BNH1	6.5e-21	50.85	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_314870 PE=4 SV...	[more]
A0A2P5BF08	4.2e-20	50.00	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_244610 PE...	[more]
A0A5J5BF67	6.3e-08	51.39	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_024744 PE=4 SV=1	[more]

BLAST of Lcy12g015770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038704.1	5.1e-28	74.74	hypothetical protein E6C27_scaffold92G002480 [Cucumis melo var. makuwa] >TYK3131...	[more]
PON50357.1	1.3e-20	50.85	hypothetical protein TorRG33x02_314870 [Trema orientale]	[more]
PON47377.1	8.7e-20	50.00	hypothetical protein PanWU01x14_244610 [Parasponia andersonii]	[more]
KAA8540337.1	1.3e-07	51.39	hypothetical protein F0562_024744 [Nyssa sinensis]	[more]
KAA8515759.1	3.5e-05	47.22	hypothetical protein F0562_018630 [Nyssa sinensis]	[more]

BLAST of Lcy12g015770 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g015770.1	Lcy12g015770.1	mRNA