Lcy12g015750 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g015750
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNA-binding protein 38
Location	Chr12: 43679283 .. 43684034 (-)
RNA-Seq Expression	Lcy12g015750
Synteny	Lcy12g015750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCTTCCACCTCCCCATCCAGCAAATTAGAGTTTGCACCTGTCGGATTTTCTCTCTCTCTCTCTCTCTCTATCAAACAATCTATCAAAATTATAACAACCACCACCAACGGCTTAAACCGTGTGGCACTCGCACCATCTTCTCAAACCTTTTCTTTCTTTTTTTCTTCCCTCTCTCTTCACTATCATTTTTCCACTGGGCACCCAAAAAATGCAGGTGGTAGTGGCTGGACCAATCAATCCCAACCCAGTCACTGTAGTGGAACAATCAAAACTCCCATCGTTTTAGCTTTTCCATTATTATTATTATTTCATGCAGAAGAAAAGAAAAGTAAAGAAAATCCTCATTATTTCTCTTTACGACATCGTTTTGCCGGCCATGGCGTACCCACATTACCGATCGCAGTTCGGAGACACCACCTTCACCAAAGTCTTCGTTGGCGGCCTCGCTTGGGAGACTCCCACTGAAGAAATGAGAACATATTTTCAACAGTTTGGTGACATTCTCGAAGCTGTGATTATCACCGATAAAAACACCTCTAAATCTAAAGGCTACGGTTTCGTAAGTCCCTCTCTTAAATTTACTCTAATACATCCACTCAGTAACTGACCTTACTGTTTGAATTATTCTTCCTCAGGTGACGTTTCGAGACGCCGAGTCTGCGAGACGGGCCTGTGCGAATCCCAATCCCATCATCGACGGGAGACGAGCCAACTGTAACATTGCGGCATTGGGACGGCCTCGGCCCTCGCCACCACGAGGTCCGTCCCTGATATATTTTTAATTTCTCTCTCATTTTTTCACCATTATTGTTGTTGTTGTTACATAACCCCTTAGTCCATTTTTGGTCATTTAGGACGAGGTCAGAGTGGCGTAAATCCCTATCAAGGAAGTACGGTACAGGCAGCGGCATCATATAGTGGAGTGCCGTCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCACCCGTCGTCTATTCGCCATACGGGTCAGTTCAGTAAATTTATTTTAATTTTTTGCGAAAGTGGGCCATGTGTGTGGATTGGAAAGTTAGGAGCTATGGGATATTAAATTTGAAATTAAGGGTTTAAACTAAAAGTAAATATGAAATCAAATATGAGATTATTAATACTATGAAAAGAAGATTATATATGTGTGTGTACGAATTGGTATGCATCAGAAACACATGGACCCATGTGGGTCTTCATGCATGCCTTTCCTTATCTTAATAATTATATCTACATATCATCAATTATCTTATTCTTCTTACCTACTATCGACCTCGATATTAAGTTTGAAACATAAGATAAATTTTGCTTAAATTACAAGTGTAGTCCAATAAATTTTCATATTTTAACCTTTTGGTGTATATTTAAATTATAATTGTTAATTTCGCTCTTCCATATTCAACGGTAAAAAAAACTACCGTGAGTCACATTGTTTTAGCCTGTCGAATAATTTGTAGCGAATGTGTAGGTACGTTAAAGTCAAAGTGAGAGTGTGGTCCAATGGCGTTGTATATGATATATATATATATATGTATATAGGGTTAAAAAGTTAGAATTAGAAACAAAACAAAAGCGTCCTTTTGTAAACGGTAGCTAGGTTCTTGGTTTTAGCGCATTATCCTGTCTGTGGTCATAATGGGTCAAAACTATAATCACTGTCATTTCTCTGTCTCTTTTAAAACCAAATTTACCTGAACTCAAAATACACTCTCCACTCTACAATCCACCCAGCTCCTCCCCACCCACCAATCAACATACCCAAAAAAATATTTAAAAAAAAAAAAAACACTACAACTTTAACAACATTTCTTCCAGAGAATTTCTAGTACAGTACTAGTAATTTTCTCACATTCATCTGAATAATTTTGATTAAGTTGCATGTTTAGTCCTTGAACTTTTAGAGTTGTGTCAATCTAGTTCCTAAATTTTAAAATGTTTCAAATAGGTCATTGAACTTTCAATTTTGTTTCCAATAAGTTCTTGAACTTTAAAAAGTACCCAATAGCTCATTAAACATTCGTTTTTGTGTCCAATATGTTTATTAGATTACATGGCAATGAGTGGAGTAGCCCATCTATCTTATGAATTGGGAGGTCTCCACTAATCTTTTCAATGTGGGATCCTCAACATGCCCCTTCAAGATGGTGCCTCTTTGGGTTCACCATTCTTGGATCGGATCCCATTTTTTTTTTATTGGACCGAATACCCGTTTGGGTTTCATGGGCTCTGATACCATATTAGATTACATGGGGTTCCATCTCAAAACCAATTGGCAATGAGTGGAGTAGCCCATCTATCTTATGAATTGGGAGGTCTCCACTAATCTTTTCAATGTGGGATCCTCAACAATGTCCCAACTTTTAATTCAGTGTCTGATAAGTTCTTAGCCTATTCAACATTTTTTAAAATCCACAAGTCTACTAGACACAAAATTTGAAGTTTAGAGTCTCAATAGACATATAATTCAATTTTTATATTGTAGATTGGTTAATTTTAAAAAATATCAAATATATTAGGGATCCATTAGACACAAAATTGAAATTTGAAGGATTTAGTAGACATTTTTTAAGTTTAGAGATCTATTAGAAACTTTTTAAAATTCAGGAACCTAATGGATACAACCCTGAAAGTTCAGGGACTAAACTTGGTAATAACACTGATAATTTTTCCATAACGTGGTTGTGTTTTTACTTTTGCAGATACCCCGCGTACAGTCCTGACTACGGCTACCACCACCATCAAGTGAGCCTCCATTTCTCTAACATTATACATATTAATTTTTTTTTCATTGCGGCATTTACTCAAACAGTTGGCGGGCACAAGAACTAACCTAAGATCAACATTGAATTTCAGCAGGCAGTGTACAACCCACAACTCCAACAGCCACAATTCTATCACCAATCCCCATATTTCTATGGCTACTCACTACAATCTCCAAGAGGAACATTTCCCACTCCTTCACAGTCTCATCCTCATCATCGCAGCATACCTCCTTCTTATCTCTACTATCCTACCGCTGCCGCTCCGTCGTTCGACTCCTCGTTCAGTTACCCTCCTCCACCTTTGATACGACACCGTTTTTCCTCTTCAGGTAAATGGTCACGATCCATACATCTTGCATATTAGTGCATGGATATCTTTTAACATACCACCGTTAAAATGTTGACAACTAGAAAAGAGAAAACCGAAGTGTATTATAGGGTTAAAAGAAGAAAAGAAAAGGGGGGTTTAAAAGTGGGGGCCATGTGGGCAAGGCTAAAGCCATGTGAATGAGCTGTCTTGGTTGGGGCCAAGGAAAACAGACCAATGAAATGGTTGAAAGGAAATTGATGACAGAGTAGCATTTCATTATATAGACAGCTACTGCACTCACCTGCATTTCCATGTGTGGTTGAGTTTCCAACCTATTATCACTCACTCCCCCTCTTCAAAATTGTTGTTTCTCAACTCTTTCTCCCATTACCCTCTTTAAACTCTTTTATTTTTCATCTGCCCCCCCTGCTTTTTTTTTGCCTTTTTGCCCTCCCTAAATTTCCCCTTTTGTTCACACACCCACATCTCAAAATACATGTTTAAATTTAGTATCTCAAGTTTTAACCTCGTGAAATGTTAGAATTGACTGATGATAAACTTACGTAACGTGTGGTACTTAGTGAAATAGTAGAAATTTAAATGATGAGTTGGGTCATCTTAGCTAGATAGGAAAGTTTCGAATTCTTGCTTTGAAGAGCTGTCATAACTTTTGATCTTCCTTGTCTTAAGTGCTTACTTTTCTCCTCTAAATATCATGTCAAAGAAACTTATCATTAGTATAGCTCGAAAATTGTTAAAACATAAGAGACTAAAACATAGATTAATGTTCTATCACACGAATGCATGATTTGATAAAAATTAGGTTAAATTATAAATTTGTTCCCTATGATATGGACAAAGTTAGATTTAGTCCCAATGATTTTAAAATTAGAATTTACTCCTATATGGTCTGATAAAACCCTACCATAGAAACTATTTATGGGGTTTTATCGGATCACAAGGACGAAATTCTAATCTTTAATACCATAAAGATTAAATTCTAACTTTCTTAAAACCATATGGACCAAATTTGTAATTGGATGTAAAAATTAAATAGTTGAATTATATGTGTTTGAATTTTTTTTTTGATTCCCATTTTAGAAGAGTAGACCCCAATTGAAAGCTAGCTGTGTCCAGCTGTCTATGAAAATGGACCACTTTCCAAGTTCCAAACTTCCAACCATCTTTTTAGGTCTCATCAAACTTTCTTGCATTCCAAGTTAGGATTCATAAATTACAATAATAAAACATTATTCACATCAAATTTTCTTCAACATTAATATATATAATAATAATATTAATGGTGGGTTTCAGATTCACAGACATCTCAGCAAACTCCCACAGAAGCTGAAGCTGGAGCTGTTACTTCACAAAGTCCAACCACTTGAGAGAAGAATCACAACCAGCAATTTCATTAAAAAAAAAAAAACCAAACCAAATTATTGGTTCCATTTCTCGTGGGGAAAAAAAAAAATTGAAGAACAGTAAAAAAAAAAGGTAAAAAAAAAAGGGTCGAGATAGAAAATTGTATAAAGTTGACAACTTGATCGATTTGACATTCTCTTTGAGATCCTCAGATTCTCACTTTTTCACCCATTTTTAATCTCTGCTTCAACTCTTGCAGAGCCTCAAGGTCAATTTTTAGAGAGAATCAATCAACCCACTTTTTC

mRNA sequence

ACTTCTTCCACCTCCCCATCCAGCAAATTAGAGTTTGCACCTGTCGGATTTTCTCTCTCTCTCTCTCTCTCTATCAAACAATCTATCAAAATTATAACAACCACCACCAACGGCTTAAACCGTGTGGCACTCGCACCATCTTCTCAAACCTTTTCTTTCTTTTTTTCTTCCCTCTCTCTTCACTATCATTTTTCCACTGGGCACCCAAAAAATGCAGGTGGTAGTGGCTGGACCAATCAATCCCAACCCAGTCACTGTAGTGGAACAATCAAAACTCCCATCGTTTTAGCTTTTCCATTATTATTATTATTTCATGCAGAAGAAAAGAAAAGTAAAGAAAATCCTCATTATTTCTCTTTACGACATCGTTTTGCCGGCCATGGCGTACCCACATTACCGATCGCAGTTCGGAGACACCACCTTCACCAAAGTCTTCGTTGGCGGCCTCGCTTGGGAGACTCCCACTGAAGAAATGAGAACATATTTTCAACAGTTTGGTGACATTCTCGAAGCTGTGATTATCACCGATAAAAACACCTCTAAATCTAAAGGCTACGGTTTCGTGACGTTTCGAGACGCCGAGTCTGCGAGACGGGCCTGTGCGAATCCCAATCCCATCATCGACGGGAGACGAGCCAACTGTAACATTGCGGCATTGGGACGGCCTCGGCCCTCGCCACCACGAGGACGAGGTCAGAGTGGCGTAAATCCCTATCAAGGAAGTACGGTACAGGCAGCGGCATCATATAGTGGAGTGCCGTCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCACCCGTCGTCTATTCGCCATACGGATACCCCGCGTACAGTCCTGACTACGGCTACCACCACCATCAACAGGCAGTGTACAACCCACAACTCCAACAGCCACAATTCTATCACCAATCCCCATATTTCTATGGCTACTCACTACAATCTCCAAGAGGAACATTTCCCACTCCTTCACAGTCTCATCCTCATCATCGCAGCATACCTCCTTCTTATCTCTACTATCCTACCGCTGCCGCTCCGTCGTTCGACTCCTCGTTCAGTTACCCTCCTCCACCTTTGATACGACACCGTTTTTCCTCTTCAGATTCACAGACATCTCAGCAAACTCCCACAGAAGCTGAAGCTGGAGCTGTTACTTCACAAAGTCCAACCACTTGAGAGAAGAATCACAACCAGCAATTTCATTAAAAAAAAAAAAACCAAACCAAATTATTGGTTCCATTTCTCGTGGGGAAAAAAAAAAATTGAAGAACAGTAAAAAAAAAAGGTAAAAAAAAAAGGGTCGAGATAGAAAATTGTATAAAGTTGACAACTTGATCGATTTGACATTCTCTTTGAGATCCTCAGATTCTCACTTTTTCACCCATTTTTAATCTCTGCTTCAACTCTTGCAGAGCCTCAAGGTCAATTTTTAGAGAGAATCAATCAACCCACTTTTTC

Coding sequence (CDS)

ATGCAGAAGAAAAGAAAAGTAAAGAAAATCCTCATTATTTCTCTTTACGACATCGTTTTGCCGGCCATGGCGTACCCACATTACCGATCGCAGTTCGGAGACACCACCTTCACCAAAGTCTTCGTTGGCGGCCTCGCTTGGGAGACTCCCACTGAAGAAATGAGAACATATTTTCAACAGTTTGGTGACATTCTCGAAGCTGTGATTATCACCGATAAAAACACCTCTAAATCTAAAGGCTACGGTTTCGTGACGTTTCGAGACGCCGAGTCTGCGAGACGGGCCTGTGCGAATCCCAATCCCATCATCGACGGGAGACGAGCCAACTGTAACATTGCGGCATTGGGACGGCCTCGGCCCTCGCCACCACGAGGACGAGGTCAGAGTGGCGTAAATCCCTATCAAGGAAGTACGGTACAGGCAGCGGCATCATATAGTGGAGTGCCGTCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCACCCGTCGTCTATTCGCCATACGGATACCCCGCGTACAGTCCTGACTACGGCTACCACCACCATCAACAGGCAGTGTACAACCCACAACTCCAACAGCCACAATTCTATCACCAATCCCCATATTTCTATGGCTACTCACTACAATCTCCAAGAGGAACATTTCCCACTCCTTCACAGTCTCATCCTCATCATCGCAGCATACCTCCTTCTTATCTCTACTATCCTACCGCTGCCGCTCCGTCGTTCGACTCCTCGTTCAGTTACCCTCCTCCACCTTTGATACGACACCGTTTTTCCTCTTCAGATTCACAGACATCTCAGCAAACTCCCACAGAAGCTGAAGCTGGAGCTGTTACTTCACAAAGTCCAACCACTTGA

Protein sequence

MQKKRKVKKILIISLYDIVLPAMAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYGFVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNPYQGSTVQAAASYSGVPSPLNQPPLPPPPPVVYSPYGYPAYSPDYGYHHHQQAVYNPQLQQPQFYHQSPYFYGYSLQSPRGTFPTPSQSHPHHRSIPPSYLYYPTAAAPSFDSSFSYPPPPLIRHRFSSSDSQTSQQTPTEAEAGAVTSQSPTT

Homology

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BLAST of Lcy12g015750 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-26
Identity = 95/242 (39.26%), Postives = 125/242 (51.65%), Query Frame = 0


Query: 32  FGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYGFVTFRDAES 91
           FGDT  TKVFVGGLAW+T  E M  +F ++GDILEAVII+DK T +SKGYGFVTF+DA++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 92  ARRACANPNPIIDGRRANCNIAAL-GRPRPSPPRGRGQSGVNPYQGSTVQAAASYSG--V 151
           A RAC +  PII+GRRANCN+A+L GR R SP     Q G      +T     ++S    
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPPHVGNHSQWYY 130

Query: 152 PSPLNQPPLPPPPPVVYSPYGYPA--------YSPDYGY-------HHHQQAVYNPQLQ- 211
           PS                 YGYP+        ++   GY        ++ Q    PQ Q 
Sbjct: 131 PSGFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFNQKVGYVGGTYMNGYYAQMQPQPQSQP 190

Query: 212 QPQFYHQSPYFYGYSLQSPRGTFPTPSQSHPHHRSIPPSYLYYPTAAAPSFDSSFSYPPP 255
           QPQ+YH   Y  G  +             +P+H+S     + +P    PSF    S+  P
Sbjct: 191 QPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQS---QAIGFP---QPSFSKPLSFSTP 246

[Close]

BLAST of Lcy12g015750 vs. ExPASy Swiss-Prot
Match: Q7T3I7 (RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 4.0e-23
Identity = 78/184 (42.39%), Postives = 102/184 (55.43%), Query Frame = 0


Query: 34  DTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 93
           DTTFTK+FVGGL + T    +R YF+ FGDI EAV+ITD+ T+KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66

Query: 94  RACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNPYQGSTVQAAASYSG---VPS 153
           RAC +PNPIIDGR+AN N+A LG  +P   +     GV     + +Q     +     P 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRNLQSAFTIGVQQLHPAFIQRPFGLTPQYIYPP 126

Query: 154 PLNQPP--LPPPPPVVYSPY-GYPAYSPDYGYHHHQQAVYNPQLQQPQFYHQSPYFYGYS 212
            + QP   +P P P + SPY  Y A +    Y H+  A Y    Q P     +  + GY 
Sbjct: 127 TIVQPSMVIPTPIPSLQSPYIDYNAAT--QAYTHYTTAAYE---QYPYAASPATGYMGYG 184

[Close]

BLAST of Lcy12g015750 vs. ExPASy Swiss-Prot
Match: Q6DIV4 (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 9.0e-23
Identity = 87/245 (35.51%), Postives = 120/245 (48.98%), Query Frame = 0


Query: 34  DTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 93
           DTTFTK+FVGGL + T    +R YF+ FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 94  RACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNPYQGSTVQAAASYSGVPSPLN 153
           RAC +PNPIIDGR+AN N+A LG    + PR       N     T+     +        
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG----AKPR-------NLQSAFTIGVQQLH-------- 126

Query: 154 QPPLPPPPPVVYSPYGYPAYSPDYGYHHHQQAVYNPQLQQPQFYHQSPYFYGYSLQSPRG 213
                  P  +  P+G    +P Y        +Y P + QP     +P     SLQSP  
Sbjct: 127 -------PAFIQRPFG---LTPQY--------IYPPAIVQPSVVIPTPI---PSLQSPYI 186

Query: 214 TFPTPSQSHPHHRSIPPSYLYYPTAAAPSFDSSFSYPPPPLIRHRFSSSDSQTSQQTPTE 273
            +   +Q+  H+ +   +Y  YP AA+P+            + + ++S+  Q    T T 
Sbjct: 187 DYNAATQAFTHYTT--AAYEQYPYAASPA---------TGYMGYGYTSAVQQPLSATTTT 200

Query: 274 AEAGA 279
           A  GA
Sbjct: 247 ATTGA 200

[Close]

BLAST of Lcy12g015750 vs. ExPASy Swiss-Prot
Match: Q6P8A7 (RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-22
Identity = 73/172 (42.44%), Postives = 92/172 (53.49%), Query Frame = 0


Query: 34  DTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 93
           DTT+TK+FVGGL + T    +R YF+ FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 94  RACANPNPIIDGRRANCNIAALG-RPRPSPPRGRGQSGVNPYQGSTVQAAASYSGVPSPL 153
           RAC +PNPIIDGR+AN N+A LG +PR   P                       G    +
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP-----------------------GFAFGV 126

Query: 154 NQPPLPPPPPVVYSPYGYPAYSPDYGYHHH--QQAVYNPQLQQPQFYHQSPY 203
            Q      P ++  P+G PA+   Y Y H   Q  V  P +QQ      SPY
Sbjct: 127 QQ----IHPALIQRPFGIPAH---YVYPHAFVQPGVVIPHVQQAAAASTSPY 148

[Close]

BLAST of Lcy12g015750 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.5e-22
Identity = 77/179 (43.02%), Postives = 99/179 (55.31%), Query Frame = 0


Query: 34  DTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 93
           DTTFTK+FVGGL + T    +R YF+ FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 94  RACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNPYQGSTVQ---AAASYSGVPS 153
           RAC +PNPIIDGR+AN N+A LG  +P   +     GV     + +Q       +   P 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRSIQTGFTIGVQQLHPAFIQRPFGLTPHYVYPQ 126

Query: 154 PLNQPPLPPPPPV--VYSPY-GYPAYSPDYGYHHHQQAVYNPQLQQPQFYHQSPYFYGY 207
            + QP +  P PV  + SPY  Y A S    Y  +  A Y+   Q P     +  F GY
Sbjct: 127 AIIQPSVVIPTPVQSIASPYIDYTAAS--QAYSQYTTAAYD---QYPYAASPAAGFVGY 179

[Close]

BLAST of Lcy12g015750 vs. ExPASy TrEMBL
Match: A0A6J1DIJ5 (RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 2.1e-115
Identity = 229/282 (81.21%), Postives = 246/282 (87.23%), Query Frame = 0


Query: 23  MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYG 82
           MAY HYRSQFGDTTFTKVFVGGLAWETPTEEMR YF+QFG+ILEAVIITDKNT+KSKGYG
Sbjct: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60

Query: 83  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNPYQGSTVQAA 142
           FVTFRD ESARRACANPNP+IDGRRANCNIAALGRPRPSPPRGR Q G+NPYQGST+QA 
Sbjct: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT 120

Query: 143 ASYSGVPSPLNQPPL----PPPPPVVYSPYGYPAYSPDYGYHHHQQAVYNPQLQQPQFYH 202
            SYSGVP+PLNQPPL    PPPPPVVYSPYGYP+YSPDYGY  H QAVYNPQ+QQPQ+YH
Sbjct: 121 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY--HPQAVYNPQVQQPQYYH 180

Query: 203 QSPYFYGYSLQSPRGTFP-TPSQSHPHHRSIPPSYLYYPTAAAPS----FD--SSFS-YP 262
           QSPY YGYS+QSPR TF   P QSH HHR +PPSYLYYP AAAPS    F+  SSFS YP
Sbjct: 181 QSPYLYGYSVQSPRATFSNAPPQSH-HHR-VPPSYLYYP-AAAPSPHAQFEPSSSFSNYP 240

Query: 263 PPPLIRHRFSSSDSQTSQQTPT------EAEAGAVTSQSPTT 287
           PPPL+RHRFSS+DSQTSQQTPT      EAEAGAVTS+SP+T
Sbjct: 241 PPPLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 277

[Close]

BLAST of Lcy12g015750 vs. ExPASy TrEMBL
Match: A0A0A0LGV2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 2.6e-113
Identity = 223/276 (80.80%), Postives = 239/276 (86.59%), Query Frame = 0


Query: 25  YPHYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYGFV 84
           YPHYRSQFGDTTFTKVFVGGLAWETPT++M+TYF+QFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 85  TFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNPYQGSTVQAAA- 144
           TFRD ESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQS VNPYQGST+QA A 
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 145 -SYSGVPSPLNQPPLPPP----PPVVYSPYGYPAYSPDYGYHHHQQAVYNPQLQQPQFYH 204
            SY GVPSPLNQPP+PPP    PPVVYSPYGYPAYSPDYGYHHH QAVYNPQ+QQPQ Y 
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183

Query: 205 QSPYFYGYSLQSPRGTFPTPSQSHPHHR-SIPPSYLYY-PTAAAPSFD-SSFSYPP---P 264
           Q+PY+YGYS  S   TFP PSQSH H R  +PPSY+YY P    P F+ SSF+YPP   P
Sbjct: 184 QTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQP 243

Query: 265 PLIRHRFSSSDSQTSQQTPTEAEAGAVTS--QSPTT 287
            +IRHRFSS+DSQTSQQTPTEAEAG VTS  QSPT+
Sbjct: 244 QIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 277

[Close]

BLAST of Lcy12g015750 vs. ExPASy TrEMBL
Match: A0A6J1IJV9 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 5.7e-113
Identity = 214/270 (79.26%), Postives = 229/270 (84.81%), Query Frame = 0


Query: 23  MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYG 82
           MAYPHYRSQFGDTT TKVFVGGLAWETPT+EMR YF+QFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 83  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNPYQGSTVQAA 142
           FVTFRDAESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ GVNPYQGST+QAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 143 ASYSGVPSPLNQPPLPPPPPVVYSPYGYPAYSPDYGYH----HHQQAVYNPQLQQPQFYH 202
            SYSGVP PLNQPPLPPPPPVVYSPYGYP Y+PDYGYH    HHQQ VYN          
Sbjct: 121 PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYN---------- 180

Query: 203 QSPYFYGYSLQSPRGTFPTPSQSHPHHRSIPPSYLYYPTAAAPSFDSSFSY--PPPPLIR 262
             PYFYGYS+QSPRG FP PSQSH    ++PP   Y P AAA  ++ SFSY  PPPPLIR
Sbjct: 181 --PYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGSFSYPPPPPPLIR 240

Query: 263 HRFSSSDSQTSQQTPTEAEAGAVTSQSPTT 287
           HRF+S+DSQTSQQTPTEAEA AVTS++ TT
Sbjct: 241 HRFASTDSQTSQQTPTEAEAEAVTSETSTT 258

[Close]

BLAST of Lcy12g015750 vs. ExPASy TrEMBL
Match: A0A6J1F8X9 (RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.7e-112
Identity = 217/274 (79.20%), Postives = 232/274 (84.67%), Query Frame = 0


Query: 23  MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYG 82
           MAYPHYRSQFGDTTFTKVFVGGLAWETPT+EMR YF+QFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 83  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNPYQGSTVQAA 142
           FVTFRDAESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ GVNPYQGST+QAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 143 ASYSGVPSPLNQPPL-PPPPPVVYSPYGYPAYSPDYGYH-----HHQQAVYNPQLQQPQF 202
            SYSGVP PLNQPPL PPPPPVVYSPYGYP Y+ DYGYH     HHQQ VYN        
Sbjct: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTTDYGYHHQHYQHHQQPVYN-------- 180

Query: 203 YHQSPYFYGYSLQSPRGTFPTPSQSHPHHRSIPPSYLYYP----TAAAPSFDSSFSYPPP 262
               PYFYGYSLQSPRG FP+PSQSH    ++PP Y+YYP     AAA  F+ SFSYPPP
Sbjct: 181 ----PYFYGYSLQSPRGAFPSPSQSHQPRVAVPP-YVYYPPPAAAAAAAQFEGSFSYPPP 240

Query: 263 PLIRHRFSSSDSQTSQQTPTEAEAGAVTSQSPTT 287
           PLIRHRF+S+DSQTSQQTP EAEA AVTS++ TT
Sbjct: 241 PLIRHRFASTDSQTSQQTPPEAEAEAVTSETSTT 261

[Close]

BLAST of Lcy12g015750 vs. ExPASy TrEMBL
Match: A0A6J1J2C6 (RNA-binding protein 38-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481192 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 5.4e-95
Identity = 197/273 (72.16%), Postives = 215/273 (78.75%), Query Frame = 0


Query: 15  LYDIVL-PAMAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDK 74
           +YD+V    MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMR YF++FGDILEAVIITDK
Sbjct: 81  VYDVVSGEGMAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEEFGDILEAVIITDK 140

Query: 75  NTSKSKGYGFVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNP 134
            TSKSKGYGFVTFRD ESA+RAC NPNPIIDGRRANCNIAALGRPRPSPPRGR QSGVN 
Sbjct: 141 ITSKSKGYGFVTFRDPESAKRACLNPNPIIDGRRANCNIAALGRPRPSPPRGRHQSGVN- 200

Query: 135 YQGSTVQAAASYSGVPSPLNQPPLPPPPPVVYSPYGYPAYSPDYGYHHHQQAVYNPQLQQ 194
                VQ+A+     P  LN PPLPPPPPVVYSPYGYP+Y+ DY Y H QQ VYNPQL+ 
Sbjct: 201 -----VQSAS-----PLQLNLPPLPPPPPVVYSPYGYPSYNSDYNY-HQQQTVYNPQLRP 260

Query: 195 PQFYHQSPYFYGYSLQSPRGTFPTPSQSHPHHRSIPPSYLYYPTAAAPSFDSSFSYPPPP 254
           PQFY QSPYFYGYS      TFP PS SH H   +PPSY+YYPT     F+ SF+YP  P
Sbjct: 261 PQFYQQSPYFYGYS-----RTFPIPSPSHQHR--LPPSYMYYPTLPPAQFEPSFNYPQAP 320

Query: 255 LIRHRFSSSDSQTSQQTPTEAEAGAVTSQSPTT 287
           L+ HRFS +DSQTS QT  +AEAGA   +SPTT
Sbjct: 321 LVSHRFSPADSQTS-QTCQQAEAGA--GESPTT 331

[Close]

BLAST of Lcy12g015750 vs. NCBI nr
Match: XP_022152706.1 (RNA-binding protein 38 [Momordica charantia])

HSP 1 Score: 425.2 bits (1092), Expect = 4.3e-115
Identity = 229/282 (81.21%), Postives = 246/282 (87.23%), Query Frame = 0


Query: 23  MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYG 82
           MAY HYRSQFGDTTFTKVFVGGLAWETPTEEMR YF+QFG+ILEAVIITDKNT+KSKGYG
Sbjct: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60

Query: 83  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNPYQGSTVQAA 142
           FVTFRD ESARRACANPNP+IDGRRANCNIAALGRPRPSPPRGR Q G+NPYQGST+QA 
Sbjct: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT 120

Query: 143 ASYSGVPSPLNQPPL----PPPPPVVYSPYGYPAYSPDYGYHHHQQAVYNPQLQQPQFYH 202
            SYSGVP+PLNQPPL    PPPPPVVYSPYGYP+YSPDYGY  H QAVYNPQ+QQPQ+YH
Sbjct: 121 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY--HPQAVYNPQVQQPQYYH 180

Query: 203 QSPYFYGYSLQSPRGTFP-TPSQSHPHHRSIPPSYLYYPTAAAPS----FD--SSFS-YP 262
           QSPY YGYS+QSPR TF   P QSH HHR +PPSYLYYP AAAPS    F+  SSFS YP
Sbjct: 181 QSPYLYGYSVQSPRATFSNAPPQSH-HHR-VPPSYLYYP-AAAPSPHAQFEPSSSFSNYP 240

Query: 263 PPPLIRHRFSSSDSQTSQQTPT------EAEAGAVTSQSPTT 287
           PPPL+RHRFSS+DSQTSQQTPT      EAEAGAVTS+SP+T
Sbjct: 241 PPPLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 277

[Close]

BLAST of Lcy12g015750 vs. NCBI nr
Match: XP_038897135.1 (RNA-binding protein 38 [Benincasa hispida])

HSP 1 Score: 423.3 bits (1087), Expect = 1.6e-114
Identity = 227/277 (81.95%), Postives = 238/277 (85.92%), Query Frame = 0


Query: 23  MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYG 82
           MAYPHYRSQFGDTTFTKVFVGGLAWETPT+ MRTYF+QFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDLMRTYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 83  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNPYQGST--VQ 142
           FVTFRDAESARRACAN NPIIDGRRANCNIAALGRPRPSPPRGRGQS VNPYQGST  VQ
Sbjct: 61  FVTFRDAESARRACANANPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQVQ 120

Query: 143 AAASYSGVPSPLNQPPL----PPPPPVVYSPYGYPAYSPDYGYHHHQQAVYNPQLQQPQF 202
           A  SY GVPSPLNQPPL    PPPPP+VYSPYGYPAYSPDYGY HH QAVYNPQ+QQPQ 
Sbjct: 121 ATPSYGGVPSPLNQPPLPPPPPPPPPIVYSPYGYPAYSPDYGYQHH-QAVYNPQVQQPQI 180

Query: 203 YHQSPYFYGYSLQSPRGTFPTPSQSHPHHRSIPPSYLYYP------TAAAPSFDSSFSYP 262
           Y QSPYFYGYSLQSPRGTF  PSQSH     +PPSY+YYP       AAA  F+++ S  
Sbjct: 181 YQQSPYFYGYSLQSPRGTFHNPSQSHHPRLVLPPSYVYYPPPSPTAAAAAAQFEAA-SIN 240

Query: 263 PPPLIRHRFSSSDSQTSQQTPTEAEAGAVTS-QSPTT 287
            PPLIRHRFSS+DSQTSQQTPTE EAG VTS QSPT+
Sbjct: 241 YPPLIRHRFSSTDSQTSQQTPTEGEAGGVTSDQSPTS 275

[Close]

BLAST of Lcy12g015750 vs. NCBI nr
Match: XP_004136431.1 (RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical protein Csa_001640 [Cucumis sativus])

HSP 1 Score: 418.3 bits (1074), Expect = 5.3e-113
Identity = 223/276 (80.80%), Postives = 239/276 (86.59%), Query Frame = 0


Query: 25  YPHYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYGFV 84
           YPHYRSQFGDTTFTKVFVGGLAWETPT++M+TYF+QFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 85  TFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNPYQGSTVQAAA- 144
           TFRD ESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQS VNPYQGST+QA A 
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 145 -SYSGVPSPLNQPPLPPP----PPVVYSPYGYPAYSPDYGYHHHQQAVYNPQLQQPQFYH 204
            SY GVPSPLNQPP+PPP    PPVVYSPYGYPAYSPDYGYHHH QAVYNPQ+QQPQ Y 
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183

Query: 205 QSPYFYGYSLQSPRGTFPTPSQSHPHHR-SIPPSYLYY-PTAAAPSFD-SSFSYPP---P 264
           Q+PY+YGYS  S   TFP PSQSH H R  +PPSY+YY P    P F+ SSF+YPP   P
Sbjct: 184 QTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQP 243

Query: 265 PLIRHRFSSSDSQTSQQTPTEAEAGAVTS--QSPTT 287
            +IRHRFSS+DSQTSQQTPTEAEAG VTS  QSPT+
Sbjct: 244 QIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 277

[Close]

BLAST of Lcy12g015750 vs. NCBI nr
Match: XP_022975652.1 (RNA-binding protein 38-like [Cucurbita maxima] >XP_022975653.1 RNA-binding protein 38-like [Cucurbita maxima])

HSP 1 Score: 417.2 bits (1071), Expect = 1.2e-112
Identity = 214/270 (79.26%), Postives = 229/270 (84.81%), Query Frame = 0


Query: 23  MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYG 82
           MAYPHYRSQFGDTT TKVFVGGLAWETPT+EMR YF+QFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 83  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNPYQGSTVQAA 142
           FVTFRDAESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ GVNPYQGST+QAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 143 ASYSGVPSPLNQPPLPPPPPVVYSPYGYPAYSPDYGYH----HHQQAVYNPQLQQPQFYH 202
            SYSGVP PLNQPPLPPPPPVVYSPYGYP Y+PDYGYH    HHQQ VYN          
Sbjct: 121 PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYN---------- 180

Query: 203 QSPYFYGYSLQSPRGTFPTPSQSHPHHRSIPPSYLYYPTAAAPSFDSSFSY--PPPPLIR 262
             PYFYGYS+QSPRG FP PSQSH    ++PP   Y P AAA  ++ SFSY  PPPPLIR
Sbjct: 181 --PYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGSFSYPPPPPPLIR 240

Query: 263 HRFSSSDSQTSQQTPTEAEAGAVTSQSPTT 287
           HRF+S+DSQTSQQTPTEAEA AVTS++ TT
Sbjct: 241 HRFASTDSQTSQQTPTEAEAEAVTSETSTT 258

[Close]

BLAST of Lcy12g015750 vs. NCBI nr
Match: XP_022936617.1 (RNA-binding protein 38-like [Cucurbita moschata])

HSP 1 Score: 415.6 bits (1067), Expect = 3.4e-112
Identity = 217/274 (79.20%), Postives = 232/274 (84.67%), Query Frame = 0


Query: 23  MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYG 82
           MAYPHYRSQFGDTTFTKVFVGGLAWETPT+EMR YF+QFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 83  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSGVNPYQGSTVQAA 142
           FVTFRDAESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ GVNPYQGST+QAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 143 ASYSGVPSPLNQPPL-PPPPPVVYSPYGYPAYSPDYGYH-----HHQQAVYNPQLQQPQF 202
            SYSGVP PLNQPPL PPPPPVVYSPYGYP Y+ DYGYH     HHQQ VYN        
Sbjct: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTTDYGYHHQHYQHHQQPVYN-------- 180

Query: 203 YHQSPYFYGYSLQSPRGTFPTPSQSHPHHRSIPPSYLYYP----TAAAPSFDSSFSYPPP 262
               PYFYGYSLQSPRG FP+PSQSH    ++PP Y+YYP     AAA  F+ SFSYPPP
Sbjct: 181 ----PYFYGYSLQSPRGAFPSPSQSHQPRVAVPP-YVYYPPPAAAAAAAQFEGSFSYPPP 240

Query: 263 PLIRHRFSSSDSQTSQQTPTEAEAGAVTSQSPTT 287
           PLIRHRF+S+DSQTSQQTP EAEA AVTS++ TT
Sbjct: 241 PLIRHRFASTDSQTSQQTPPEAEAEAVTSETSTT 261

[Close]

BLAST of Lcy12g015750 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 236.1 bits (601), Expect = 3.5e-62
Identity = 150/291 (51.55%), Postives = 186/291 (63.92%), Query Frame = 0


Query: 27  HYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYGFVTF 86
           +YRS FGDTT+TKVFVGGLAWETPT+EMR YF+QFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 87  RDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSG-VNPYQGSTVQAAASY 146
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ+G  + YQ       ++Y
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---GPSTY 125

Query: 147 SGVPSPLNQPPLPPPPPVVYSPYGYPAYSPD-YGYHHHQQAVYNPQLQQPQFYHQ----- 206
           +G+ +PL   P    P ++Y  YGY  Y+PD +GYH   QA+YN QLQQ Q+Y Q     
Sbjct: 126 TGMAAPL---PPAAAPQLMYPSYGY-TYNPDQFGYH---QALYNTQLQQAQYYQQQQQLY 185

Query: 207 ----------------SPYFYGYSLQSPRGTF--------PTPSQSHPHHRSIPPSYLYY 266
                           SPY+YGYSLQ+PR  +        P   Q H H R   PS+L Y
Sbjct: 186 GGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVY 245

Query: 267 PTAAAPSFDSSFSYPPPPLIRHRFSSSDSQTSQQTPTEAEAGAVTSQSPTT 287
           P+      +SSF+   PPL     SS++S+   Q    AE  A T+    T
Sbjct: 246 PS------NSSFA---PPLQGVLSSSTESEAVPQQVPAAEGEATTTAPEIT 277

[Close]

BLAST of Lcy12g015750 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 235.0 bits (598), Expect = 7.7e-62
Identity = 139/255 (54.51%), Postives = 171/255 (67.06%), Query Frame = 0


Query: 27  HYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYGFVTF 86
           +YRS FGDTT+TKVFVGGLAWETPT+EMR YF+QFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 87  RDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSG-VNPYQGSTVQAAASY 146
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ+G  + YQ       ++Y
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---GPSTY 125

Query: 147 SGVPSPLNQPPLPPPPPVVYSPYGYPAYSPD-YGYHHHQQAVYNPQLQQPQFYHQ----- 206
           +G+ +PL   P    P ++Y  YGY  Y+PD +GYH   QA+YN QLQQ Q+Y Q     
Sbjct: 126 TGMAAPL---PPAAAPQLMYPSYGY-TYNPDQFGYH---QALYNTQLQQAQYYQQQQQLY 185

Query: 207 ----------------SPYFYGYSLQSPRGTF--------PTPSQSHPHHRSIPPSYLYY 251
                           SPY+YGYSLQ+PR  +        P   Q H H R   PS+L Y
Sbjct: 186 GGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVY 244

[Close]

BLAST of Lcy12g015750 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 205.7 bits (522), Expect = 5.0e-53
Identity = 139/294 (47.28%), Postives = 171/294 (58.16%), Query Frame = 0


Query: 27  HYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSKGYGFVTF 86
           +YRS FGDTT TKVFVGGLAWETPT+EMR YF QFG+ILEAVIITDK T KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65

Query: 87  RDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSG-VNPYQGSTVQAAASY 146
           RD++SA RA A+PNP+IDGR+ANCNIA+ GRPRPS PRGRGQ G  + YQG      +SY
Sbjct: 66  RDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGG---GQSSY 125

Query: 147 SGVPSPLNQPPLPPPPPVVYSPYGYPAYSPDYGYHHHQQAVYNPQLQQPQFYHQ------ 206
           +G+ +P+ Q        ++Y  YGY  Y+ +YGYH   QA+YN QLQQ Q+Y Q      
Sbjct: 126 TGMAAPVQQ---AAAAQLMYPSYGY-TYNSEYGYH---QALYNAQLQQAQYYQQQMYGGG 185

Query: 207 ------------SPYFYGYSLQSPRGTFPTPSQSHPHH--------------RSIP--PS 266
                       SPY+Y   LQ+P    P P   H  H              + +P   S
Sbjct: 186 GATSPSSSNIMPSPYYY---LQAPS---PRPYLHHQQHYQYHHHQQQQQQQQQRLPSASS 245

Query: 267 YLYYPTAAAPSFDSSFSYPPPPLIRHRFSSSDSQTSQQ----TPTEAEAGAVTS 282
           YL YP+       S+      PL     S +  Q S++     PT+A     T+
Sbjct: 246 YLIYPSNVEAPTPSNVPTSQGPLSSSTESHAPQQVSEEGGEFDPTDAPESTTTN 283

[Close]

BLAST of Lcy12g015750 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-41
Identity = 120/276 (43.48%), Postives = 149/276 (53.99%), Query Frame = 0


Query: 20  LPAMAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSK 79
           +P+  + +  S FGDTTFTKVFVGGLAWET +E +R +F Q+GDILEAV+ITDKNT +SK
Sbjct: 6   IPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSK 65

Query: 80  GYGFVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRP---------SPPRGRGQSG 139
           GYGFVTFRD E+ARRAC +P PIIDGRRANCN+A+LGR RP         +P R R  S 
Sbjct: 66  GYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS- 125

Query: 140 VNPYQGSTVQAAASYSGVPSPLNQPPLPPPPPVVYSPYGYPAYSPDYGYHHHQQAVYNPQ 199
             PY GS VQ+         P +QPP       V  PYG   Y PDY Y    Q  Y P 
Sbjct: 126 --PYVGS-VQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMY-SQSQGFYGPY 185

Query: 200 LQQ--------PQFYHQSPYFYG---YSLQSPRGTFPTPSQSHPHHRSI------PPSYL 259
           + Q        P   +   Y YG   +++    G       SHP    +      P S +
Sbjct: 186 MGQQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMSAI 245

Query: 260 Y--YPTAAAPSFDSSFSYPPPPLIRHRFSSSDSQTS 268
              YP+ +AP+        PP  I+   SS   QT+
Sbjct: 246 QSPYPSPSAPTHQRVIVQTPPQYIQ---SSGSDQTT 273

[Close]

BLAST of Lcy12g015750 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-41
Identity = 120/276 (43.48%), Postives = 149/276 (53.99%), Query Frame = 0


Query: 20  LPAMAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRTYFQQFGDILEAVIITDKNTSKSK 79
           +P+  + +  S FGDTTFTKVFVGGLAWET +E +R +F Q+GDILEAV+ITDKNT +SK
Sbjct: 6   IPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSK 65

Query: 80  GYGFVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRP---------SPPRGRGQSG 139
           GYGFVTFRD E+ARRAC +P PIIDGRRANCN+A+LGR RP         +P R R  S 
Sbjct: 66  GYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS- 125

Query: 140 VNPYQGSTVQAAASYSGVPSPLNQPPLPPPPPVVYSPYGYPAYSPDYGYHHHQQAVYNPQ 199
             PY GS VQ+         P +QPP       V  PYG   Y PDY Y    Q  Y P 
Sbjct: 126 --PYVGS-VQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMY-SQSQGFYGPY 185

Query: 200 LQQ--------PQFYHQSPYFYG---YSLQSPRGTFPTPSQSHPHHRSI------PPSYL 259
           + Q        P   +   Y YG   +++    G       SHP    +      P S +
Sbjct: 186 MGQQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMSAI 245

Query: 260 Y--YPTAAAPSFDSSFSYPPPPLIRHRFSSSDSQTS 268
              YP+ +AP+        PP  I+   SS   QT+
Sbjct: 246 QSPYPSPSAPTHQRVIVQTPPQYIQ---SSGSDQTT 273

The following BLAST results are available for this feature:

BLAST of Lcy12g015750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	3.9e-26	39.26	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q7T3I7	4.0e-23	42.39	RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2	[more]
Q6DIV4	9.0e-23	35.51	RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1	[more]
Q6P8A7	3.4e-22	42.44	RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1	[more]
Q5ZJX4	4.5e-22	43.02	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]

BLAST of Lcy12g015750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIJ5	2.1e-115	81.21	RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1	[more]
A0A0A0LGV2	2.6e-113	80.80	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV...	[more]
A0A6J1IJV9	5.7e-113	79.26	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=...	[more]
A0A6J1F8X9	1.7e-112	79.20	RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 S...	[more]
A0A6J1J2C6	5.4e-95	72.16	RNA-binding protein 38-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114811...	[more]

BLAST of Lcy12g015750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152706.1	4.3e-115	81.21	RNA-binding protein 38 [Momordica charantia]	[more]
XP_038897135.1	1.6e-114	81.95	RNA-binding protein 38 [Benincasa hispida]	[more]
XP_004136431.1	5.3e-113	80.80	RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical protein Csa_00...	[more]
XP_022975652.1	1.2e-112	79.26	RNA-binding protein 38-like [Cucurbita maxima] >XP_022975653.1 RNA-binding prote...	[more]
XP_022936617.1	3.4e-112	79.20	RNA-binding protein 38-like [Cucurbita moschata]	[more]

BLAST of Lcy12g015750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.1	3.5e-62	51.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	7.7e-62	54.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	5.0e-53	47.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	2.6e-41	43.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	2.6e-41	43.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 39..111 e-value: 1.1E-23 score: 94.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 40..98 e-value: 1.1E-16 score: 60.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 38..115 score: 16.431911
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 22..132 e-value: 3.2E-25 score: 90.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..135
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 23..269
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 38..113 e-value: 2.37343E-44 score: 143.525
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 23..269
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 19..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g015750.1	Lcy12g015750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding