Lcy12g014890 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g014890
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionGlutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
LocationChr12: 42783361 .. 42787719 (+)
RNA-Seq ExpressionLcy12g014890
SyntenyLcy12g014890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGACGTGAAAGATAGAGAAGGCGCAGCAGCAAATTTGGCCATAGGTTCCATTTTTTTCGACCTTCACTGTTGGAAATGGGAAGTAAAGCTCTTCCTCTTCTCAAAGGAGCTCTATCACTTCCATCGAAGCACCAAATCTTCATCTCTCGCGGCTTGCATACACTACCTGTTTCTAACATCAGAATTCGAAAATGTTCGACTGCTTCAGGAATTCGAGCTTCTCTTCAACCTCCCGATGTGCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCACTCCAAGTGAGGTATGCGAGGCCTTCACCACGTCAATGTTTTCTTCTGTTTCTTCGATCTTTTTTCAAGAAAAATCTACTTCTTACTTTTCGGATTTGTGTTCTTTTGGTTGTCTATTTCAGGTTGAAGAATTTGCTCCTAAAATTCGACAAGTTGTTGACTGGTAAGTTTCTTTCTCTCTCTCTCTCTCTCTCTCACACACACACACAAAGCACACACACTCACAGCAACTAATAGACATTGAAACACATTGGGCTGTCTAGATAAATTTAGTGCATGTTAACGCAAAAACCAAGAATATCTAAGAAGTAAAAGCATGTTATTCGAAGTATGTGACCTCCGCGAATGTGGCTTCTGTTGGTAATACTCAGACTTAGTTATCGGAAATGTTGTTTTGTTTCCTGAGGTGAGACTGAAGGAGATGATTTGTGTTGGACCTTGGAGGTGGAATTTGTCCTCGATTATTGAATTTTGGCCTCTAGGTAACTTACTATGAGACAATTGCCTATTATGCCCTAGACATTGTGGGGGAATTCTTCATAGGCAGGTTGTAAATTGAGATTCTATGAGTTTACATTTACTCCTTTCAACAGAAGAAAGAGTGACGAGATCAAATTTCAAGCGAGATTACAATATTTGTTCTGTTTACATGTTCAAGTGTGACATTTAGGGAGATGTAAAAACAAGAAAAAGCCAGGTAGTGGACAACTTCTCAAAAGACAGGAAGTTAAATAATTTTGTTGTTTATATAACCTTTTTTACACTAACTTTCGGGGTTAAAGATGATCTCATGGGCGAATTGAGCACTCAAAATGCTGTTCTGATATCTCTTTTTTCACTTTGAAGTTAAGAGTACTCAAAAGTCAAAACTTCCTCATAATGTTCTTTTTTTAAAATTTTTTATCATTGTGTAAGGATAAACTCATGAATCTACTGGATCCTCCAAATTAGGCTTGCTAGTCTTGTTAGTTGTTACATTGGAAAATTTGTTGTACCTTTGTGGTACAAACATGCTTTTCAGACTCTTACGTTCTTTCAAGTTACAACTCTTTAATCTCACCAGCCTTTGAGAATATTGAGTAGTATTCAGAAGGGCCTAAGGAACAAAAGTCGCAACATTATTACCACCAGCCTCTGATAATAATAATAGCAATATCCCCCGAATTTCTTCATGACTCCCATGACAGCACAAGATCAAACGACTGAAGCTTTAGGAGTGAAGGTTTGGTTGCACCAAAGTTGTTCAACGCACTGGGAGGCATCATTGGGAAAGCACTATGACAAAAGAGAATTCCGATTTTCTTCTTACAGAGAATGCACCAGCTTGAGAGAAAAGAGAACATGGGGTTCCTTTTATGAACCATAACATCAGAATTTAAGCCCCCGTGAGACGGGGTCAAACTAAAAATGTCACCTCTTTGGGCATTTCTTCTTCTAAATAACCTTAATGAACTGCTTTGAAGGGGCATCACCACCATCTCCTTTATTATCAAGGAACTAGGAATTTTGAAAAAAGTGGCAATTAGAATCCAAACTCTTCCATGGTGGCCACCTACCTAGGATATTTAATATCCTACGAGTTTCCTTGACAACCAAATGTAGTAGGGTCAGGCGGTTGTCCCGTGAGATTAGTTGAGGTGCGCGTAAGCTGGCCCGGACACTCACGGATATATATATATATATAAAAAAAAAAAAAAAAAAAAAAAAATCCAAACTCCAACAGGGCATAGCCCTTACTTAGGAATTCAAACATTTTCCAGAAGAAATGAAAGATATGCTCCCCTAAGAAGTTCTATATCACTAAGTAGCCTTCTAAACTTGAGGTTCCAATATTTGCCACATTCCAGTGATCCGGGCCAGGATGGTGTCAGAATTAGTAAGTTGGGAAATTTTGGAAAATTTCTCCTTTAGAGGTTGTGAGGTGTTTCATTCATCTGACCAAATAGAAATTGACGCCATTACACACCATAGCATTCAGAAACTACCTTCATCCTCTCTCTACTTTTTGCAATGAAGTTCCAGGGGTTTTTGCCGTTGTAGTCCGGGCCAGGATGGTGTCAGAATTAGTAAGTTGGGAAATTTTGGAAAATTTCTCCTTTAGAGGTTGTGAGGTGTTTCATTCATCTGACCAAATAGAAATTGACGCCATTACACACCATAGCATTCAGAAACTACCTTCATCCTCTCTCTACTTTTTGCAATGAAGTTCCAGGGGTTTTTGCCGTTGTAGTTTCCAAACTAAAGCGGCCATTTTTAGTCAAACCTTATTTGCTAATAATGATGTTTATCTGGGTATTTTTTTTGAGCTTGCCGCTGAGGTCTCCTTCCTAAAGTACCAAGTCTCCACTTCATGAGGTGACTTCGCCACTGTGGCGCCAATCCCCTTATGCCACGAAATGTTTTTTAAACTCTTTTCAACTTTTGGAGTTTTCTTTTAACAAATTTTTAAAAATAAAAGGAAGTAGATTGAGATGCCGGCTAGAACTGACTGGATTAAAATCTTAAAATTGTATGTTGGTTGATTCACTCAAGAGTCAAGACTAAATGCTTGAGATAGAAGCACTCAGAGCATGAGTTATTCATTTTTCTATGGAATTGTTCATTCTGTTAACTCTATTCTCCTGGCTGTTGTATCCTTTGGTTTCTATAAACTTTAATATAATTATATTATGTTTCAGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATCGAGCCTTCCATTAGAGCAGGTGCATGCAACCACTCTTACTAGTTTATTATTGTCAATCATTTTGCAACTTGTTTGTTGTTCTTCTTCTAGCCATGCCTTTGCTTGTTTCTCACTATTAAGTGTTGACTTCTAATTGCATGTGTCTTTTCAAAATGGAAATTTTACATCACAAAATTTCATTGGAAAATAATAATCATAAAACTTGGAGGTATTATCTCTTTCTCGCGACGGACACTAGTGAGCTAATGATGCACATCTTGGAGGGGATAGCAGCAATAGGACCCAAAACTTTGTACTGTTTACTTGTGCTATCATGGCCAAGATAATTGATTACGATTTCAGATACCAAAAAAGCAGCTCCCCCACCCACAGATTTTTATATATATTTCTGGGAGAGCATTGGAGCATGAATGCTACTATGTGATTAAAATGCTAAAACCTCAAGGCAAACAACTGTTGTGCAGCAAAAATTAATACTAATTTTCCTAATATTTACAGATACTGAAGGTGGCAATCAGCGGAATGATGTTTCTAAAACATTTGAAAATAGGTAATCTGGTTGTTTCTCAACTTGGGCTATCACAACGTTTGGTAGGAAATTTTGGTCATAACTTCTATTATTTTTGTTTCCCCCAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAGTTGCAAAGGTAGGTGGCTTGTTTGATCTGTCACCGTCATTCATTAATGGCATGTTCTTCAACATCTTATGTCTTTGAAATGATTAATTTTGCTACAGGTTACTAGATGATATTTGAATTACAATTCGAATTAACCATCCGTTTAATCTTTAATCTTAGTTGAAATGTTTAATTTGCGCATATTTTTTAATTTCACTCTAGTTAGGGTTAAGTTGGCTGATCACCGCACTTTCTGGTTGTCACGTAAGATGTTTATCCAAAACTCAGATTCTAAGTTGAGAAAGGGACCTGTCCTCGTTGAGCTTATCAACTTTCCTTGGAGAGATGATGGAGACAGATTAAGGTTAATCTAACCTCATTATCTCATAAATCTGAATTAGATGACTCTTCCATTTTTATCTTTTCAAAATTAAAATCTGAATGAACTTCAGAAAATCCTGAGATTCTACCAACTTAACCCCTTATTTATTTTGTTTTCCCCTTATTATAATTATAATTTTTGTATTTCATTTCCTTTTTAGTTTAACAAATGTTAGGTAGATGATCAAACATTCGACCTTAAGATATATGTTTAACTACTGAATTATGCTATTTTGCTACTTTGAAGTGTTCGTTTATTTGTTTTTACACGAAGAAAAATCAACCGTCGAGATTGATA

mRNA sequence

GTGACGTGAAAGATAGAGAAGGCGCAGCAGCAAATTTGGCCATAGGTTCCATTTTTTTCGACCTTCACTGTTGGAAATGGGAAGTAAAGCTCTTCCTCTTCTCAAAGGAGCTCTATCACTTCCATCGAAGCACCAAATCTTCATCTCTCGCGGCTTGCATACACTACCTGTTTCTAACATCAGAATTCGAAAATGTTCGACTGCTTCAGGAATTCGAGCTTCTCTTCAACCTCCCGATGTGCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCACTCCAAGTGAGGTTGAAGAATTTGCTCCTAAAATTCGACAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATCGAGCCTTCCATTAGAGCAGATACTGAAGGTGGCAATCAGCGGAATGATGTTTCTAAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAGTTGCAAAGTTAGGGTTAAGTTGGCTGATCACCGCACTTTCTGGTTGTCACGTAAGATGTTTATCCAAAACTCAGATTCTAAGTTGAGAAAGGGACCTGTCCTCGTTGAGCTTATCAACTTTCCTTGGAGAGATGATGGAGACAGATTAAGGTTAATCTAACCTCATTATCTCATAAATCTGAATTAGATGACTCTTCCATTTTTATCTTTTCAAAATTAAAATCTGAATGAACTTCAGAAAATCCTGAGATTCTACCAACTTAACCCCTTATTTATTTTGTTTTCCCCTTATTATAATTATAATTTTTGTATTTCATTTCCTTTTTAGTTTAACAAATGTTAGGTAGATGATCAAACATTCGACCTTAAGATATATGTTTAACTACTGAATTATGCTATTTTGCTACTTTGAAGTGTTCGTTTATTTGTTTTTACACGAAGAAAAATCAACCGTCGAGATTGATA

Coding sequence (CDS)

ATGGGAAGTAAAGCTCTTCCTCTTCTCAAAGGAGCTCTATCACTTCCATCGAAGCACCAAATCTTCATCTCTCGCGGCTTGCATACACTACCTGTTTCTAACATCAGAATTCGAAAATGTTCGACTGCTTCAGGAATTCGAGCTTCTCTTCAACCTCCCGATGTGCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCACTCCAAGTGAGGTTGAAGAATTTGCTCCTAAAATTCGACAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATCGAGCCTTCCATTAGAGCAGATACTGAAGGTGGCAATCAGCGGAATGATGTTTCTAAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAG

Protein sequence

MGSKALPLLKGALSLPSKHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
Homology
[Close]
BLAST of Lcy12g014890 vs. ExPASy Swiss-Prot
Match: D7STK2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera OX=29760 GN=GATC PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-41
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAE 60
           MGS+AL LLK   +  ++  +F S+       S   IR  + +   R++L PPD+PRLAE
Sbjct: 1   MGSRALLLLK---ATTAETLLFTSKS----TFSKALIRNSTRSFSTRSALLPPDLPRLAE 60

Query: 61  TARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFENR 120
           TARISLTP EVEEFAPKIRQV+DWFGQLQ VDLQSIEPSIRADTEG N R+D  +TFENR
Sbjct: 61  TARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTEGDNLRDDSPETFENR 120

Query: 121 EAMIGAVPVFDEPYIRVPKVLNKE 145
           EA+I A+P ++EPY++VPKVLNK+
Sbjct: 121 EAIIAAIPSYEEPYLKVPKVLNKD 137

[Close]
BLAST of Lcy12g014890 vs. ExPASy Swiss-Prot
Match: B9RRX2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis OX=3988 GN=GATC PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.1e-40
Identity = 89/145 (61.38%), Postives = 109/145 (75.17%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKHQIFISRGLHTLPVSNIRI-RKCSTASGIRASLQPPDVPRLA 60
           MGS+AL LLK  ++LP KHQI         P S +   R+ S  +   +SLQPPDV RLA
Sbjct: 1   MGSRALLLLK--VALPLKHQIKCLNYTKITPASELLTKRRFSIKATNGSSLQPPDVSRLA 60

Query: 61  ETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFEN 120
           ETARISL  +EVEEFAPKIRQV+DWFGQLQ VDL S+EP+IRAD+EG N R+DV +TF  
Sbjct: 61  ETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRADSEGENLRDDVPETFSE 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REA+I AVP +++PY++VPKVLNKE
Sbjct: 121 REAIIAAVPSYEKPYVKVPKVLNKE 143

[Close]
BLAST of Lcy12g014890 vs. ExPASy Swiss-Prot
Match: B9INH0 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694 GN=GATC PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.2e-37
Identity = 87/145 (60.00%), Postives = 107/145 (73.79%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKHQI-FISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGS+A+ LLKG    P KH I F+       P  +IR R  + A+   +SL+PPDV RLA
Sbjct: 1   MGSRAVLLLKG--PSPPKHSILFLLNHKKISPAPSIR-RFTTKATANGSSLEPPDVARLA 60

Query: 61  ETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFEN 120
           ETARISLTP +VEEF PKIRQV+DW   L +VDL S+EPSIRADTEG N R+D  +TFEN
Sbjct: 61  ETARISLTPQQVEEFGPKIRQVIDWHA-LLSVDLDSVEPSIRADTEGDNLRHDNPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REA+I AVP +++PY++VPKVLNKE
Sbjct: 121 REAIIAAVPNYEDPYVKVPKVLNKE 141

[Close]
BLAST of Lcy12g014890 vs. ExPASy Swiss-Prot
Match: A2XK57 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GATC PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.1e-32
Identity = 67/105 (63.81%), Postives = 84/105 (80.00%), Query Frame = 0 

Query: 41  STASGIRASLQPPDVPRLAETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSI 100
           + A+    +L+PPD+PRLA  ARISL+P E EEFAPKIRQVVDWFGQLQ VDL+S+EPS+
Sbjct: 49  AAAAAGSGALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSL 108

Query: 101 RADTEGGNQ-RNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 145
           RA T  GN  R D  +TF NR+A+I +VP +D+PYI+VP+VLNKE
Sbjct: 109 RAGTAAGNSLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]
BLAST of Lcy12g014890 vs. ExPASy Swiss-Prot
Match: Q7XZZ1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GATC PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.1e-32
Identity = 67/105 (63.81%), Postives = 84/105 (80.00%), Query Frame = 0 

Query: 41  STASGIRASLQPPDVPRLAETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSI 100
           + A+    +L+PPD+PRLA  ARISL+P E EEFAPKIRQVVDWFGQLQ VDL+S+EPS+
Sbjct: 49  AAAAAGSGALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSL 108

Query: 101 RADTEGGNQ-RNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 145
           RA T  GN  R D  +TF NR+A+I +VP +D+PYI+VP+VLNKE
Sbjct: 109 RAGTAAGNSLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]
BLAST of Lcy12g014890 vs. ExPASy TrEMBL
Match: A0A6J1CQ90 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013151 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.0e-62
Identity = 129/147 (87.76%), Postives = 136/147 (92.52%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPS-KHQIFISRG--LHTLPVSNIRIRKCSTASGIRASLQPPDVPR 60
           MGSKALPLLKGALSLPS + QIFI  G   HTLP+S+ +IRKCST   IRASLQPPDVPR
Sbjct: 1   MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNKIRKCSTTPRIRASLQPPDVPR 60

Query: 61  LAETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTF 120
           LAETARISLTP+EVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRND+S+TF
Sbjct: 61  LAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDISETF 120

Query: 121 ENREAMIGAVPVFDEPYIRVPKVLNKE 145
           ENREAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 ENREAMIGAVPVFDEPYIRVPKVLNKE 147

[Close]
BLAST of Lcy12g014890 vs. ExPASy TrEMBL
Match: A0A5A7T6R5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=GATC PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.8e-62
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGSKALPLLKGA S PS K QIFIS   H+LPVSNI IRK STASG+ ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFEN 120
           +TARISLTP++VEEFAPKI QVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDV +TFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Lcy12g014890 vs. ExPASy TrEMBL
Match: A0A1S3CQE8 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503618 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.8e-62
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGSKALPLLKGA S PS K QIFIS   H+LPVSNI IRK STASG+ ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFEN 120
           +TARISLTP++VEEFAPKI QVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDV +TFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Lcy12g014890 vs. ExPASy TrEMBL
Match: A0A6J1FM33 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111446647 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.5e-61
Identity = 128/145 (88.28%), Postives = 135/145 (93.10%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGS AL LLKGA SLPS + QIFIS  L++LPVS+IRIRKCSTA GIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFEN 120
           ETARISL P+EVEEFAPKIRQVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+DVS+TFEN
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Lcy12g014890 vs. ExPASy TrEMBL
Match: A0A6J1IVG1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111480328 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.4e-61
Identity = 127/145 (87.59%), Postives = 134/145 (92.41%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGS AL LLKGA SLP  + QIFIS  L+TLPVSNIRI+KCSTA GIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPLLNPQIFISTSLNTLPVSNIRIQKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFEN 120
           ETARISL PSEVEEFAPKIRQVVDWFGQL+ VDLQSIEPSIRADTEGGNQR+DVS+TFEN
Sbjct: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLEAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REA+IGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REALIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Lcy12g014890 vs. NCBI nr
Match: XP_022143239.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia] >XP_022143247.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 249.2 bits (635), Expect = 2.1e-62
Identity = 129/147 (87.76%), Postives = 136/147 (92.52%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPS-KHQIFISRG--LHTLPVSNIRIRKCSTASGIRASLQPPDVPR 60
           MGSKALPLLKGALSLPS + QIFI  G   HTLP+S+ +IRKCST   IRASLQPPDVPR
Sbjct: 1   MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNKIRKCSTTPRIRASLQPPDVPR 60

Query: 61  LAETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTF 120
           LAETARISLTP+EVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRND+S+TF
Sbjct: 61  LAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDISETF 120

Query: 121 ENREAMIGAVPVFDEPYIRVPKVLNKE 145
           ENREAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 ENREAMIGAVPVFDEPYIRVPKVLNKE 147

[Close]
BLAST of Lcy12g014890 vs. NCBI nr
Match: XP_038897282.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897283.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 247.3 bits (630), Expect = 8.1e-62
Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGSKALPLLKGA S PS K +IFIS GLH+LP S IRIRKCSTAS I ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSCPSLKLRIFISTGLHSLPASLIRIRKCSTASRILASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFEN 120
           ETARISLTP++VEEFAPKIRQVVDWFGQLQTVDLQSIEP+IRADTEGGNQRND+ +TFEN
Sbjct: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPAIRADTEGGNQRNDIPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Lcy12g014890 vs. NCBI nr
Match: XP_008466091.1 (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo] >KAA0038633.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa] >TYK31232.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa])

HSP 1 Score: 246.1 bits (627), Expect = 1.8e-61
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGSKALPLLKGA S PS K QIFIS   H+LPVSNI IRK STASG+ ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFEN 120
           +TARISLTP++VEEFAPKI QVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDV +TFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Lcy12g014890 vs. NCBI nr
Match: XP_023521629.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo] >XP_023521637.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.1 bits (627), Expect = 1.8e-61
Identity = 129/145 (88.97%), Postives = 134/145 (92.41%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           M S AL LLKGA SLPS + QIFIS  L++LPVSNIRIRKCSTA GIRASLQPPDVPRLA
Sbjct: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFEN 120
           ETARISL PSEVEEFAPKIRQVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+DVS+TFEN
Sbjct: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Lcy12g014890 vs. NCBI nr
Match: XP_022941306.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022941307.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata] >KAG6608102.1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.4 bits (625), Expect = 3.1e-61
Identity = 128/145 (88.28%), Postives = 135/145 (93.10%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGS AL LLKGA SLPS + QIFIS  L++LPVS+IRIRKCSTA GIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFEN 120
           ETARISL P+EVEEFAPKIRQVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+DVS+TFEN
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Lcy12g014890 vs. TAIR 10
Match: AT4G32915.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 134.8 bits (338), Expect = 5.5e-32
Identity = 61/111 (54.95%), Postives = 87/111 (78.38%), Query Frame = 0 

Query: 34  NIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVEEFAPKIRQVVDWFGQLQTVDL 93
           N RI +  ++    + LQPPDV RLA+TARISLTP+E+EE   KIR+V+DWFGQLQ VD+
Sbjct: 45  NHRIARSYSSDSDSSVLQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDV 104

Query: 94  QSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 145
            S+EP+IRA+ +GGN R D  +TF+NR+++  ++P F++ Y++VPK+LNKE
Sbjct: 105 NSVEPAIRAEMDGGNLREDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

The following BLAST results are available for this feature:
BLAST of Lcy12g014890 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
D7STK22.8e-4161.81Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vi... [more]
B9RRX24.1e-4061.38Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ri... [more]
B9INH04.2e-3760.00Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Po... [more]
A2XK574.1e-3263.81Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
Q7XZZ14.1e-3263.81Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
BLAST of Lcy12g014890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CQ901.0e-6287.76Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Mo... [more]
A0A5A7T6R58.8e-6286.90Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A1S3CQE88.8e-6286.90Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A6J1FM331.5e-6188.28Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A6J1IVG14.4e-6187.59Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
BLAST of Lcy12g014890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143239.12.1e-6287.76glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momo... [more]
XP_038897282.18.1e-6287.59glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Beni... [more]
XP_008466091.11.8e-6186.90PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon... [more]
XP_023521629.11.8e-6188.97glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
XP_022941306.13.1e-6188.28glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
BLAST of Lcy12g014890 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G32915.15.5e-3254.95FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translation... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003837Glu-tRNAGln amidotransferase C subunitPFAMPF02686Glu-tRNAGlncoord: 66..137
e-value: 3.3E-9
score: 36.9
IPR003837Glu-tRNAGln amidotransferase C subunitTIGRFAMTIGR00135TIGR00135coord: 54..141
e-value: 3.1E-14
score: 51.1
IPR003837Glu-tRNAGln amidotransferase C subunitPANTHERPTHR15004UNCHARACTERIZEDcoord: 26..144
IPR003837Glu-tRNAGln amidotransferase C subunitHAMAPMF_00122GatCcoord: 49..142
score: 18.239048
NoneNo IPR availableGENE3D1.10.20.60coord: 52..92
e-value: 6.0E-8
score: 34.6
NoneNo IPR availablePANTHERPTHR15004:SF2GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT C, CHLOROPLASTIC/MITOCHONDRIALcoord: 26..144
IPR036113Glu-tRNAGln amidotransferase superfamily, subunit CSUPERFAMILY141000Glu-tRNAGln amidotransferase C subunitcoord: 50..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g014890.1Lcy12g014890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006450 regulation of translational fidelity
cellular_component GO:0009507 chloroplast
cellular_component GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005524 ATP binding
molecular_function GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016740 transferase activity