Lcy12g014510 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g014510
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr12: 42471415 .. 42472416 (-)
RNA-Seq Expression	Lcy12g014510
Synteny	Lcy12g014510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGATTTGTTTTTGATCTTTTACAAGGTGTCATCTGTTTTTATACTCTTTAATTGGAATAGGGAAAAATTTTTAAAAACACTTGTGCTCCCTCATTCATATGTTTATGAAATTTCTGTGATATCTTCAACTTCACAAAAGCAATTTTCACACAGAAATGGAGGCTGTAATCAACCACGTGAGCGATGATGAATCTGTTTCCTCTGGGCCTTCCATGGATTTTCAACTCGACTTCAACTCCATCCAAAATAACCAAGAAATTACTTCTTCCAATTCCTCTAATGTAAGTTTTTCATTTTCATTTATCCATTTCTGGCTTCAAAATGATCATCACATTTTTTTATTATCTGGTTTTTGACAGAATTTGCCTAAGCCAGGACCAAATCAACCCCAACAATCTCAGTCTCACCACATTTTTAATCCAGAACCATCATCAATTCCGGTATATTTACATTAATTAAATAGACAATGAAGAAAAAGTAAGTAAATTGATTAATTTGGAGTTGAATGATGATGATCAGGTGGGAATGGGATTGGGATTTGGACCAAGAGTAGAATATGGGCCAATTCATTCAGAACAAGATAGATCTCATCAAATTTATCCAAATAATTCAGGCCTTGGAAACTTATCTCAACTTGGGGATTTTTCTCTGTATGTGTCCAAATCTTTATCTTTCTTTCTTTTTCTTGTTTTAGGGTTTTGAAATTATGTTGTTCCTTCTAATTATTCATTGCTAAAATTTTGATTTGTGTGATTATGAACCATTTTTTAGATCTCTTGATATGGGTTCGGCCAATCCCCATCGCATCAATGTTACTCCTCCTCCTAATTTGTTTTTTGATTTCAACTGGGTATAATTAATTTTAGTTTTGTTGTAAATTTAATTTCAATTTAGTGTTACCCTCTAAACGGTGTCGTTTTTATGGATTCTGCAGGTAGTAAGATCAACCCTAAATACAAGACGAATGCAAGCTCACTATCATTCTCCCATGCCTTTCAGG

mRNA sequence

CAGGATTTGTTTTTGATCTTTTACAAGGTGTCATCTGTTTTTATACTCTTTAATTGGAATAGGGAAAAATTTTTAAAAACACTTGTGCTCCCTCATTCATATGTTTATGAAATTTCTGTGATATCTTCAACTTCACAAAAGCAATTTTCACACAGAAATGGAGGCTGTAATCAACCACGTGAGCGATGATGAATCTGTTTCCTCTGGGCCTTCCATGGATTTTCAACTCGACTTCAACTCCATCCAAAATAACCAAGAAATTACTTCTTCCAATTCCTCTAATAATTTGCCTAAGCCAGGACCAAATCAACCCCAACAATCTCAGTCTCACCACATTTTTAATCCAGAACCATCATCAATTCCGGTGGGAATGGGATTGGGATTTGGACCAAGAGTAGAATATGGGCCAATTCATTCAGAACAAGATAGATCTCATCAAATTTATCCAAATAATTCAGGCCTTGGAAACTTATCTCAACTTGGGGATTTTTCTCTATCTCTTGATATGGGTTCGGCCAATCCCCATCGCATCAATGTTACTCCTCCTCCTAATTTGTTTTTTGATTTCAACTGGGTATAATTAATTTTAGTTTTGTTGTAAATTTAATTTCAATTTAGTGTTACCCTCTAAACGGTGTCGTTTTTATGGATTCTGCAGGTAGTAAGATCAACCCTAAATACAAGACGAATGCAAGCTCACTATCATTCTCCCATGCCTTTCAGG

Coding sequence (CDS)

ATGGAGGCTGTAATCAACCACGTGAGCGATGATGAATCTGTTTCCTCTGGGCCTTCCATGGATTTTCAACTCGACTTCAACTCCATCCAAAATAACCAAGAAATTACTTCTTCCAATTCCTCTAATAATTTGCCTAAGCCAGGACCAAATCAACCCCAACAATCTCAGTCTCACCACATTTTTAATCCAGAACCATCATCAATTCCGGTGGGAATGGGATTGGGATTTGGACCAAGAGTAGAATATGGGCCAATTCATTCAGAACAAGATAGATCTCATCAAATTTATCCAAATAATTCAGGCCTTGGAAACTTATCTCAACTTGGGGATTTTTCTCTATCTCTTGATATGGGTTCGGCCAATCCCCATCGCATCAATGTTACTCCTCCTCCTAATTTGTTTTTTGATTTCAACTGGGTATAA

Protein sequence

MEAVINHVSDDESVSSGPSMDFQLDFNSIQNNQEITSSNSSNNLPKPGPNQPQQSQSHHIFNPEPSSIPVGMGLGFGPRVEYGPIHSEQDRSHQIYPNNSGLGNLSQLGDFSLSLDMGSANPHRINVTPPPNLFFDFNWV

Homology

[Close]

BLAST of Lcy12g014510 vs. ExPASy TrEMBL
Match: A0A6J1FAJ6 (uncharacterized protein LOC111443578 OS=Cucurbita moschata OX=3662 GN=LOC111443578 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 56/126 (44.44%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 6   NHVSDDESVSSGPSMDFQLDFNSIQNNQEITSSNSSNNLPKPGPNQPQQSQSHHIFNPEP 65
           NH + DESVSSGP +DFQL+F +  +N + TS+NSSN                       
Sbjct: 5   NHAT-DESVSSGPCVDFQLNFKNNPSNHDTTSANSSN----------------------- 64

Query: 66  SSIPVGMGLGFGPRVEYGPIHSEQDRSHQIYPN-NSGLGNLSQLGDFSLSLDMGS--ANP 125
               VG+GL  G     G  HS+QD  HQ Y N N GLGN S L D SLSL+M S   +P
Sbjct: 65  ----VGLGLELG----LGAAHSDQDSYHQAYQNSNPGLGNFSPLQDLSLSLNMRSTGTSP 98

Query: 126 HRINVT 129
           HRIN+T
Sbjct: 125 HRINIT 98

[Close]

BLAST of Lcy12g014510 vs. ExPASy TrEMBL
Match: A0A6J1IM01 (uncharacterized protein LOC111476478 OS=Cucurbita maxima OX=3661 GN=LOC111476478 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 57/138 (41.30%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 6   NHVSDDESVSSGPSMDFQLDFNSIQNNQEITSSNSSNNLPKPGPNQPQQSQSHHIFNPEP 65
           NH + DESVSSGP +DFQL+F +   N + TS+NSSN                       
Sbjct: 5   NHAT-DESVSSGPCVDFQLNFKNNPTNHDTTSANSSN----------------------- 64

Query: 66  SSIPVGMGLGFGPRVEYGPIHSEQDRSHQIYPN-NSGLGNLSQLGDFSLSLDMGS--ANP 125
               VG+GL  G     G  HS+QD  HQ Y N N GLGN S L D SL+L+M S   +P
Sbjct: 65  ----VGLGLELG----LGAAHSDQDSYHQAYQNSNPGLGNFSPLQDLSLTLNMRSTGTSP 105

Query: 126 HRINVTPPPNLFFDFNWV 141
           H +N+T   N++   NWV
Sbjct: 125 HSVNIT---NVY--QNWV 105

[Close]

BLAST of Lcy12g014510 vs. NCBI nr
Match: XP_022937227.1 (uncharacterized protein LOC111443578 [Cucurbita moschata])

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-11
Identity = 56/126 (44.44%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 6   NHVSDDESVSSGPSMDFQLDFNSIQNNQEITSSNSSNNLPKPGPNQPQQSQSHHIFNPEP 65
           NH + DESVSSGP +DFQL+F +  +N + TS+NSSN                       
Sbjct: 5   NHAT-DESVSSGPCVDFQLNFKNNPSNHDTTSANSSN----------------------- 64

Query: 66  SSIPVGMGLGFGPRVEYGPIHSEQDRSHQIYPN-NSGLGNLSQLGDFSLSLDMGS--ANP 125
               VG+GL  G     G  HS+QD  HQ Y N N GLGN S L D SLSL+M S   +P
Sbjct: 65  ----VGLGLELG----LGAAHSDQDSYHQAYQNSNPGLGNFSPLQDLSLSLNMRSTGTSP 98

Query: 126 HRINVT 129
           HRIN+T
Sbjct: 125 HRINIT 98

[Close]

BLAST of Lcy12g014510 vs. NCBI nr
Match: KAG6591749.1 (hypothetical protein SDJN03_14095, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-11
Identity = 56/126 (44.44%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 6   NHVSDDESVSSGPSMDFQLDFNSIQNNQEITSSNSSNNLPKPGPNQPQQSQSHHIFNPEP 65
           NH + DESVSSGP +DFQL+F +  +N + TS+NSSN                       
Sbjct: 5   NHAT-DESVSSGPCVDFQLNFKNNPSNHDTTSANSSN----------------------- 64

Query: 66  SSIPVGMGLGFGPRVEYGPIHSEQDRSHQIYPN-NSGLGNLSQLGDFSLSLDMGS--ANP 125
               VG+GL  G     G  HS+QD  HQ Y N N GLGN S L D SLSL+M S   +P
Sbjct: 65  ----VGLGLELG----LGAAHSDQDSYHQAYQNSNPGLGNFSPLRDLSLSLNMRSTGTSP 98

Query: 126 HRINVT 129
           HRIN+T
Sbjct: 125 HRINIT 98

[Close]

BLAST of Lcy12g014510 vs. NCBI nr
Match: XP_023535733.1 (uncharacterized protein LOC111797072 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-11
Identity = 56/126 (44.44%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 6   NHVSDDESVSSGPSMDFQLDFNSIQNNQEITSSNSSNNLPKPGPNQPQQSQSHHIFNPEP 65
           NH + DESVSSGP +DFQL+F +  +N + TS+NSSN                       
Sbjct: 5   NHAT-DESVSSGPCVDFQLNFKNNPSNHDTTSANSSN----------------------- 64

Query: 66  SSIPVGMGLGFGPRVEYGPIHSEQDRSHQIYPN-NSGLGNLSQLGDFSLSLDMGS--ANP 125
               VG+GL  G     G  HS+QD  HQ Y N N GLGN S L D SLSL+M S   +P
Sbjct: 65  ----VGLGLELG----LGAAHSDQDSYHQAYQNSNPGLGNFSPLQDLSLSLNMRSTGTSP 98

Query: 126 HRINVT 129
           HRIN+T
Sbjct: 125 HRINIT 98

[Close]

BLAST of Lcy12g014510 vs. NCBI nr
Match: XP_022975919.1 (uncharacterized protein LOC111476478 [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-10
Identity = 57/138 (41.30%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 6   NHVSDDESVSSGPSMDFQLDFNSIQNNQEITSSNSSNNLPKPGPNQPQQSQSHHIFNPEP 65
           NH + DESVSSGP +DFQL+F +   N + TS+NSSN                       
Sbjct: 5   NHAT-DESVSSGPCVDFQLNFKNNPTNHDTTSANSSN----------------------- 64

Query: 66  SSIPVGMGLGFGPRVEYGPIHSEQDRSHQIYPN-NSGLGNLSQLGDFSLSLDMGS--ANP 125
               VG+GL  G     G  HS+QD  HQ Y N N GLGN S L D SL+L+M S   +P
Sbjct: 65  ----VGLGLELG----LGAAHSDQDSYHQAYQNSNPGLGNFSPLQDLSLTLNMRSTGTSP 105

Query: 126 HRINVTPPPNLFFDFNWV 141
           H +N+T   N++   NWV
Sbjct: 125 HSVNIT---NVY--QNWV 105

The following BLAST results are available for this feature:

BLAST of Lcy12g014510 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g014510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAJ6	1.1e-11	44.44	uncharacterized protein LOC111443578 OS=Cucurbita moschata OX=3662 GN=LOC1114435...	[more]
A0A6J1IM01	1.5e-10	41.30	uncharacterized protein LOC111476478 OS=Cucurbita maxima OX=3661 GN=LOC111476478...	[more]

BLAST of Lcy12g014510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937227.1	2.2e-11	44.44	uncharacterized protein LOC111443578 [Cucurbita moschata]	[more]
KAG6591749.1	2.2e-11	44.44	hypothetical protein SDJN03_14095, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023535733.1	2.2e-11	44.44	uncharacterized protein LOC111797072 [Cucurbita pepo subsp. pepo]	[more]
XP_022975919.1	3.2e-10	41.30	uncharacterized protein LOC111476478 [Cucurbita maxima]	[more]

BLAST of Lcy12g014510 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g014510.1	Lcy12g014510.1	mRNA