Lcy12g013590 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g013590
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein TOPLESS
Location	Chr12: 41616832 .. 41617781 (-)
RNA-Seq Expression	Lcy12g013590
Synteny	Lcy12g013590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTATATTGAAGATGGTATGTGGTAAGAAATACTTAGCTGTGTTGGGGATACTTGGACTTAGCAATGTAAAGAATTATACAACTTCTTTATTTCTCTCACTTTCATGGTTTGGTGATGGATGTTTTAGGCTCTTCTCATGTGGGACAAGTAAAGATAGAGAGTCTTATATTGTTGAGTGGAATGAGAGTGAAGGAGCTGTTAAGAGAACTTACCAAGGGTTCCTCAAGCAATCTCTGGGTGCTGTAAGTTGGATACAACTACAAATTTGTTTTTGGCAGCAGGTGATGATCTCCATTAAATTTGAGACATGGACAATGTTCAACTTTTGATGAACGTAGATGCTGATGGAGGGAGGCATTTGTGCAAGTTTCCCGGTAAGTTTCCGTGCAAGTCAATTGAAAAATTAAAAGAAAATTGTAATTAACATCTGCTTACAGTTTTCTGTTCATTCCCTTTAATATCAAAGACAAGTCCACGCATTTGCTTTAACAAAGATGGGCCCTTTTTGCTGTTTCTAGCAATGAAAATGGAATTAAAATCTTAGCAAATGTGGATCTACACAAATTCTGGAAGTGCAATCTACACAATCCACGCATCTGTTTCTTGCTGCTTCCTTCTCTGACCTATGCCTCTTGTTCATGCTTTTCAGATATCTATGTTGATCTACACAAATTCTGGAAGTGCAATCTTGGCATTGGCATCAAATGCATTTCACCTGCTATGGAAATGGACGCGAACTGATTCAACAGGCAAGGTATCATAAAATGTTATGTTATTAGTTTCTGTCTGTCATCTGGAGCCCTTTCCTTAGACATCGTACTCTAAATTTCCATTGTACGTACATAATCAGTACTGTACCTTCTTATCCAGCTTTGCATGTTGAACTCTGATGTGATTCTTGCAACTTCCAAGTGGGAGGCTATCATCATTATCATCACAGTTTAA

mRNA sequence

ATGGCTTATATTGAAGATGGTATGTGGCTCTTCTCATGTGGGACAAGTAAAGATAGAGAGTCTTATATTGTTGAGTGGAATGAGAGTGAAGGAGCTGTTAAGAGAACTTACCAAGGGTTCCTCAAGCAATCTCTGGGTGCTATGCTGATGGAGGGAGGCATTTGTGCAAGTTTCCCGATATCTATGTTGATCTACACAAATTCTGGAAGTGCAATCTTGGCATTGGCATCAAATGCATTTCACCTGCTATGGAAATGGACGCGAACTGATTCAACAGGCAAGCTTTGCATGTTGAACTCTGATGTGATTCTTGCAACTTCCAAGTGGGAGGCTATCATCATTATCATCACAGTTTAA

Coding sequence (CDS)

ATGGCTTATATTGAAGATGGTATGTGGCTCTTCTCATGTGGGACAAGTAAAGATAGAGAGTCTTATATTGTTGAGTGGAATGAGAGTGAAGGAGCTGTTAAGAGAACTTACCAAGGGTTCCTCAAGCAATCTCTGGGTGCTATGCTGATGGAGGGAGGCATTTGTGCAAGTTTCCCGATATCTATGTTGATCTACACAAATTCTGGAAGTGCAATCTTGGCATTGGCATCAAATGCATTTCACCTGCTATGGAAATGGACGCGAACTGATTCAACAGGCAAGCTTTGCATGTTGAACTCTGATGTGATTCTTGCAACTTCCAAGTGGGAGGCTATCATCATTATCATCACAGTTTAA

Protein sequence

MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAMLMEGGICASFPISMLIYTNSGSAILALASNAFHLLWKWTRTDSTGKLCMLNSDVILATSKWEAIIIIITV

Homology

[Close]

BLAST of Lcy12g013590 vs. ExPASy Swiss-Prot
Match: Q94AI7 (Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-14
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAM 49
           MAY  DG  LFSCGTSKD ES+IVEWNESEGAVKRTYQGF K+SLG +
Sbjct: 556 MAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVV 603

HSP 2 Score: 54.7 bits (130), Expect = 8.3e-07
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 60  ISMLIYTNSGSAILALASNAFHLLWKWTRTD--STGK 95
           IS LI+TNSG+AILALASNA HLLWKW R +  +TGK
Sbjct: 771 ISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGK 807

[Close]

BLAST of Lcy12g013590 vs. ExPASy Swiss-Prot
Match: Q0WV90 (Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-14
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAM 49
           MAY  DG  LFSCGTSKD ES+IVEWNESEGAVKRTYQGF K+SLG +
Sbjct: 556 MAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVV 603

HSP 2 Score: 56.2 bits (134), Expect = 2.9e-07
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 60  ISMLIYTNSGSAILALASNAFHLLWKWTRTD--STGK 95
           IS LI+TNSG+AILALASNA HLLWKW R D  +TGK
Sbjct: 760 ISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGK 796

[Close]

BLAST of Lcy12g013590 vs. ExPASy Swiss-Prot
Match: Q10NY2 (Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-14
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAM 49
           MAY  DG  LFSCGTSKD ES++VEWNESEGAVKRTYQGF K+S+G +
Sbjct: 551 MAYSADGSRLFSCGTSKDGESHLVEWNESEGAVKRTYQGFRKRSMGVV 598

HSP 2 Score: 55.8 bits (133), Expect = 3.7e-07
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 60  ISMLIYTNSGSAILALASNAFHLLWKWTRTD--STGK 95
           IS LIYTNSG AILALASNA HLLWKW R D  S+GK
Sbjct: 776 ISRLIYTNSGVAILALASNAVHLLWKWPRNDRNSSGK 812

[Close]

BLAST of Lcy12g013590 vs. ExPASy Swiss-Prot
Match: Q0J7U6 (Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-13
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAM 49
           MAY  DG  LFSCGTSKD +S++VEWNE+EGA+KRTY GF K+SLG +
Sbjct: 547 MAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVV 594

HSP 2 Score: 49.3 bits (116), Expect = 3.5e-05
Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 45  LGAMLMEGGICASFPISMLIYTNSGSAILALASNAFHLLWKWTRTD 91
           L A+ M      S  +  L+YTN+G A+LAL SNA H LWKW RTD
Sbjct: 761 LRALRMPDTSATSSKVVRLLYTNNGVALLALGSNAVHKLWKWQRTD 806

[Close]

BLAST of Lcy12g013590 vs. ExPASy Swiss-Prot
Match: Q5NBT9 (Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAMLME 52
           M Y  DG  LFSCGTSKD +SY+VEWNESEG++KRTY GF K+S G  +++
Sbjct: 538 MLYSADGTRLFSCGTSKDGDSYLVEWNESEGSIKRTYSGFRKKSAGVGVVQ 588

HSP 2 Score: 42.7 bits (99), Expect = 3.3e-03
Identity = 18/28 (64.29%), Postives = 20/28 (71.43%), Query Frame = 0


Query: 63  LIYTNSGSAILALASNAFHLLWKWTRTD 91
           L+YTNSG  +LAL SNA   LWKW R D
Sbjct: 770 LLYTNSGVGLLALGSNAIQRLWKWARND 797

[Close]

BLAST of Lcy12g013590 vs. ExPASy TrEMBL
Match: A0A540KZ20 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_034970 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.6e-23
Identity = 62/90 (68.89%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1    MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAMLMEGGICASFPI 60
            MAY  DG  LFSCGTSKD ESYIVEWNESEGAVKRTYQGF    +        I     I
Sbjct: 1756 MAYSADGTRLFSCGTSKDGESYIVEWNESEGAVKRTYQGF---RISLSFNMTSILPISYI 1815

Query: 61   SMLIYTNSGSAILALASNAFHLLWKWTRTD 91
            S LIYTNSGSAILALASNA HLLWKW R++
Sbjct: 1816 SRLIYTNSGSAILALASNAIHLLWKWQRSE 1842

[Close]

BLAST of Lcy12g013590 vs. ExPASy TrEMBL
Match: A0A6J1BGG4 (topless-related protein 1 OS=Herrania umbratica OX=108875 GN=LOC110427369 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAM 49
           MAY  DG  LFSCGTSKD ESYIVEWNESEGAVKRTYQGF K+SLG +
Sbjct: 556 MAYSADGTRLFSCGTSKDGESYIVEWNESEGAVKRTYQGFRKRSLGVV 603

[Close]

BLAST of Lcy12g013590 vs. ExPASy TrEMBL
Match: A0A6J1BGG4 (topless-related protein 1 OS=Herrania umbratica OX=108875 GN=LOC110427369 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-04
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 60  ISMLIYTNSGSAILALASNAFHLLWKWTRTD 91
           IS LI+TNSG+AILALASNA HLLWKW R+D
Sbjct: 785 ISRLIFTNSGNAILALASNAIHLLWKWQRSD 815

HSP 2 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAM 49
           MAY  DG  LFSCGTSKD ESYIVEWNESEGAVKRTYQGF K+SLG +
Sbjct: 555 MAYSADGTRLFSCGTSKDGESYIVEWNESEGAVKRTYQGFRKRSLGVV 602

[Close]

BLAST of Lcy12g013590 vs. ExPASy TrEMBL
Match: A0A6J1IYH0 (protein TOPLESS OS=Cucurbita maxima OX=3661 GN=LOC111479634 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 60  ISMLIYTNSGSAILALASNAFHLLWKWTRTD--STGK 95
           IS LIYTNSGSAILALASNA HLLWKWTR++  STGK
Sbjct: 779 ISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGK 815

HSP 2 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAM 49
           MAY  DG  LFSCGTSKD ESYIVEWNESEGAVKRTYQGF K+SLG +
Sbjct: 555 MAYSADGTRLFSCGTSKDGESYIVEWNESEGAVKRTYQGFRKRSLGVV 602

[Close]

BLAST of Lcy12g013590 vs. ExPASy TrEMBL
Match: A0A6J1KEV5 (protein TOPLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111492626 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 60  ISMLIYTNSGSAILALASNAFHLLWKWTRTD--STGK 95
           IS LIYTNSGSAILALASNA HLLWKWTR++  STGK
Sbjct: 778 ISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGK 814

HSP 2 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAM 49
           MAY  DG  LFSCGTSKD ESYIVEWNESEGAVKRTYQGF K+SLG +
Sbjct: 490 MAYSADGTRLFSCGTSKDGESYIVEWNESEGAVKRTYQGFRKRSLGVV 537

[Close]

BLAST of Lcy12g013590 vs. NCBI nr
Match: TQD79476.1 (hypothetical protein C1H46_034970 [Malus baccata])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-22
Identity = 62/90 (68.89%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1    MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAMLMEGGICASFPI 60
            MAY  DG  LFSCGTSKD ESYIVEWNESEGAVKRTYQGF    +        I     I
Sbjct: 1756 MAYSADGTRLFSCGTSKDGESYIVEWNESEGAVKRTYQGF---RISLSFNMTSILPISYI 1815

Query: 61   SMLIYTNSGSAILALASNAFHLLWKWTRTD 91
            S LIYTNSGSAILALASNA HLLWKW R++
Sbjct: 1816 SRLIYTNSGSAILALASNAIHLLWKWQRSE 1842

[Close]

BLAST of Lcy12g013590 vs. NCBI nr
Match: KAF3588876.1 (hypothetical protein F2Q69_00026810 [Brassica cretica])

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-18
Identity = 58/103 (56.31%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAMLMEGG----ICA 60
           MAY  DG  LFSCGTSKD ESYIVEWNESEGAVKRTYQGF K+SLG +  +      + A
Sbjct: 407 MAYSADGTRLFSCGTSKDGESYIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAA 466

Query: 61  SFPISMLIYTNSGSAILA---LASNAFHLLWKWTRTD--STGK 95
               S+  +      +L    LASNA HLLWKW R D  +TGK
Sbjct: 467 GDDFSIKFWDMDNVQLLTAIXLASNAIHLLWKWQRNDRNATGK 509

[Close]

BLAST of Lcy12g013590 vs. NCBI nr
Match: KAG2729391.1 (hypothetical protein I3760_01G247600 [Carya illinoinensis])

HSP 1 Score: 87.4 bits (215), Expect = 8.8e-14
Identity = 68/202 (33.66%), Postives = 75/202 (37.13%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAMLM---------- 60
           MAY  DG  LFSCGTSKD ES+IVEWNESEGAVKRTYQGF K+SLG +            
Sbjct: 301 MAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAA 360

Query: 61  ----------------------EGGICAS------------------------------- 91
                                 EGG+ AS                               
Sbjct: 361 GDDFSIKFWDMDNVQLLTTVDAEGGLPASPRIRFNRDGNLLAVSTSENGIKILANADGSR 420

[Close]

BLAST of Lcy12g013590 vs. NCBI nr
Match: KAG7998114.1 (hypothetical protein I3843_01G242700 [Carya illinoinensis])

HSP 1 Score: 87.4 bits (215), Expect = 8.8e-14
Identity = 68/202 (33.66%), Postives = 75/202 (37.13%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAMLM---------- 60
           MAY  DG  LFSCGTSKD ES+IVEWNESEGAVKRTYQGF K+SLG +            
Sbjct: 301 MAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAA 360

Query: 61  ----------------------EGGICAS------------------------------- 91
                                 EGG+ AS                               
Sbjct: 361 GDDFSIKFWDMDNVQLLTTVDAEGGLPASPRIRINRDGNLLAVSTNENGIKILANADGSR 420

[Close]

BLAST of Lcy12g013590 vs. NCBI nr
Match: KAG7998113.1 (hypothetical protein I3843_01G242700 [Carya illinoinensis])

HSP 1 Score: 87.4 bits (215), Expect = 8.8e-14
Identity = 68/202 (33.66%), Postives = 75/202 (37.13%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAMLM---------- 60
           MAY  DG  LFSCGTSKD ES+IVEWNESEGAVKRTYQGF K+SLG +            
Sbjct: 554 MAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAA 613

Query: 61  ----------------------EGGICAS------------------------------- 91
                                 EGG+ AS                               
Sbjct: 614 GDDFSIKFWDMDNVQLLTTVDAEGGLPASPRIRINRDGNLLAVSTNENGIKILANADGSR 673

[Close]

BLAST of Lcy12g013590 vs. TAIR 10
Match: AT1G80490.1 (TOPLESS-related 1 )

HSP 1 Score: 80.9 bits (198), Expect = 7.7e-16
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAM 49
           MAY  DG  LFSCGTSKD ES+IVEWNESEGAVKRTYQGF K+SLG +
Sbjct: 555 MAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVV 602

HSP 2 Score: 56.2 bits (134), Expect = 2.0e-08
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 60  ISMLIYTNSGSAILALASNAFHLLWKWTRTD--STGK 95
           IS LI+TNSG+AILALASNA HLLWKW R D  +TGK
Sbjct: 759 ISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGK 795

[Close]

BLAST of Lcy12g013590 vs. TAIR 10
Match: AT1G15750.1 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 80.9 bits (198), Expect = 7.7e-16
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAM 49
           MAY  DG  LFSCGTSKD ES+IVEWNESEGAVKRTYQGF K+SLG +
Sbjct: 556 MAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVV 603

HSP 2 Score: 54.7 bits (130), Expect = 5.9e-08
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 60  ISMLIYTNSGSAILALASNAFHLLWKWTRTD--STGK 95
           IS LI+TNSG+AILALASNA HLLWKW R +  +TGK
Sbjct: 771 ISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGK 807

[Close]

BLAST of Lcy12g013590 vs. TAIR 10
Match: AT1G15750.2 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 80.9 bits (198), Expect = 7.7e-16
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAM 49
           MAY  DG  LFSCGTSKD ES+IVEWNESEGAVKRTYQGF K+SLG +
Sbjct: 556 MAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVV 603

HSP 2 Score: 54.7 bits (130), Expect = 5.9e-08
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 60  ISMLIYTNSGSAILALASNAFHLLWKWTRTD--STGK 95
           IS LI+TNSG+AILALASNA HLLWKW R +  +TGK
Sbjct: 771 ISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGK 807

[Close]

BLAST of Lcy12g013590 vs. TAIR 10
Match: AT1G80490.2 (TOPLESS-related 1 )

HSP 1 Score: 80.9 bits (198), Expect = 7.7e-16
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAM 49
           MAY  DG  LFSCGTSKD ES+IVEWNESEGAVKRTYQGF K+SLG +
Sbjct: 556 MAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVV 603

HSP 2 Score: 56.2 bits (134), Expect = 2.0e-08
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 60  ISMLIYTNSGSAILALASNAFHLLWKWTRTD--STGK 95
           IS LI+TNSG+AILALASNA HLLWKW R D  +TGK
Sbjct: 760 ISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGK 796

[Close]

BLAST of Lcy12g013590 vs. TAIR 10
Match: AT1G15750.3 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 80.9 bits (198), Expect = 7.7e-16
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAYIEDGMWLFSCGTSKDRESYIVEWNESEGAVKRTYQGFLKQSLGAM 49
           MAY  DG  LFSCGTSKD ES+IVEWNESEGAVKRTYQGF K+SLG +
Sbjct: 556 MAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVV 603

HSP 2 Score: 54.7 bits (130), Expect = 5.9e-08
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 60  ISMLIYTNSGSAILALASNAFHLLWKWTRTD--STGK 95
           IS LI+TNSG+AILALASNA HLLWKW R +  +TGK
Sbjct: 771 ISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGK 807

The following BLAST results are available for this feature:

BLAST of Lcy12g013590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AI7	1.1e-14	79.17	Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1	[more]
Q0WV90	1.1e-14	79.17	Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3	[more]
Q10NY2	3.2e-14	75.00	Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1	[more]
Q0J7U6	4.5e-13	68.75	Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TP...	[more]
Q5NBT9	1.3e-12	62.75	Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1	[more]

BLAST of Lcy12g013590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A540KZ20	8.6e-23	68.89	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_034970 PE=4 SV=1	[more]
A0A6J1BGG4	1.1e-12	81.25	topless-related protein 1 OS=Herrania umbratica OX=108875 GN=LOC110427369 PE=4 S...	[more]
A0A6J1BGG4	3.1e-04	80.65	topless-related protein 1 OS=Herrania umbratica OX=108875 GN=LOC110427369 PE=4 S...	[more]
A0A6J1IYH0	3.3e-06	83.78	protein TOPLESS OS=Cucurbita maxima OX=3661 GN=LOC111479634 PE=4 SV=1	[more]
A0A6J1KEV5	3.3e-06	83.78	protein TOPLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111492626 PE=4 SV=1	[more]

Pages

BLAST of Lcy12g013590 vs. NCBI nr


Match Name	E-value	Identity	Description
TQD79476.1	1.8e-22	68.89	hypothetical protein C1H46_034970 [Malus baccata]	[more]
KAF3588876.1	2.7e-18	56.31	hypothetical protein F2Q69_00026810 [Brassica cretica]	[more]
KAG2729391.1	8.8e-14	33.66	hypothetical protein I3760_01G247600 [Carya illinoinensis]	[more]
KAG7998114.1	8.8e-14	33.66	hypothetical protein I3843_01G242700 [Carya illinoinensis]	[more]
KAG7998113.1	8.8e-14	33.66	hypothetical protein I3843_01G242700 [Carya illinoinensis]	[more]

BLAST of Lcy12g013590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80490.1	7.7e-16	79.17	TOPLESS-related 1	[more]
AT1G15750.1	7.7e-16	79.17	Transducin family protein / WD-40 repeat family protein	[more]
AT1G15750.2	7.7e-16	79.17	Transducin family protein / WD-40 repeat family protein	[more]
AT1G80490.2	7.7e-16	79.17	TOPLESS-related 1	[more]
AT1G15750.3	7.7e-16	79.17	Transducin family protein / WD-40 repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR44083:SF27	BNAA09G56690D PROTEIN	coord: 60..94 coord: 1..49
IPR027728	Topless family	PANTHER	PTHR44083	TOPLESS-RELATED PROTEIN 1-RELATED	coord: 1..49
IPR027728	Topless family	PANTHER	PTHR44083	TOPLESS-RELATED PROTEIN 1-RELATED	coord: 60..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g013590.1	Lcy12g013590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048608	reproductive structure development
biological_process	GO:0048367	shoot system development