Lcy12g012550 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g012550
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr12: 40395564 .. 40396371 (+)
RNA-Seq Expression	Lcy12g012550
Synteny	Lcy12g012550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAACATTTGCCTTGCCAGCGGCCAATTGTTGAGCAAAGGATATAGTCTTGTGGAAGGATGACCTTGCAGGCAGAAGCATGGAAGGTTGAAGAAGGACAAAAACTCAATCACCAAAGAGTGGGAGAGGAAGGACACTTCTTTGATAGGATCTGAAATGAGAGTTTGGAAGGAGAGGGAGAAAGTAGAAAGAAAGGATGAAAAATTGCAGAGATAGCAACCTGCCCAATCTGGAGAACCTTTTGAGTCATAGACGCTGGATCTCCCCTCCTCAGGGCGTGTGGAAGATCAATTCGGATGCTTCTTGGTCTGAGGAGAATCAAAGAGGCAGCCTAGGGTGGATTGCTCGTGACTCCAAAGGTTGTCTGATCTATGCGGGTTTCAAGCAATTGAAGTTTAAATGGCCAATTAAATGCCTTGAAATGGAAGCGATCGCTGTGAGTTTAAAGAACTTACTGACTAGAATGGAAAGGTCGCTCCCCCGATTAATAGTTGAAGCTGATTCTTCCGAAGCCATATCGGTTCTTAATCGCTCATCGAAGGACCTATCGGAAGTCAGGGTTTTGGCGAAGAAGGTCGAGGCGTTGGCATCGAGCGTGGGGGAGGTTATCTTCACCTTTAGCCCGCGGGATACAAACACCGAAGTGCACAATTTAGCGCGATTTGCAGCTGCCTTAGAGTTTTCGGGTAGATCTTGCTGGAATTTTTTGGAGTCTTCCATATCGGAAGATGTTTTTTTTTGTATGGGGTTTTTTGCCCCCATGGTTGAACTCTTCGGTTCTGATGAAGAGACTGTGTTTTTCTGGTGTG

mRNA sequence

TTAACATTTGCCTTGCCAGCGGCCAATTGTTGAGCAAAGGATATAGTCTTGTGGAAGGATGACCTTGCAGGCAGAAGCATGGAAGGTTGAAGAAGGACAAAAACTCAATCACCAAAGAGTGGGAGAGGAAGGACACTTCTTTGATAGGATCTGAAATGAGAGTTTGGAAGGAGAGGGAGAAAGTAGAAAGAAAGGATGAAAAATTGCAGAGATAGCAACCTGCCCAATCTGGAGAACCTTTTGAGTCATAGACGCTGGATCTCCCCTCCTCAGGGCGTGTGGAAGATCAATTCGGATGCTTCTTGGTCTGAGGAGAATCAAAGAGGCAGCCTAGGGTGGATTGCTCGTGACTCCAAAGGTTGTCTGATCTATGCGGGTTTCAAGCAATTGAAGTTTAAATGGCCAATTAAATGCCTTGAAATGGAAGCGATCGCTGTGAGTTTAAAGAACTTACTGACTAGAATGGAAAGGTCGCTCCCCCGATTAATAGTTGAAGCTGATTCTTCCGAAGCCATATCGGTTCTTAATCGCTCATCGAAGGACCTATCGGAAGTCAGGGTTTTGGCGAAGAAGGTCGAGGCGTTGGCATCGAGCGTGGGGGAGGTTATCTTCACCTTTAGCCCGCGGGATACAAACACCGAAGTGCACAATTTAGCGCGATTTGCAGCTGCCTTAGAGTTTTCGGGTAGATCTTGCTGGAATTTTTTGGAGTCTTCCATATCGGAAGATGTTTTTTTTTGTATGGGGTTTTTTGCCCCCATGGTTGAACTCTTCGGTTCTGATGAAGAGACTGTGTTTTTCTGGTGTG

Coding sequence (CDS)

ATGAAAAATTGCAGAGATAGCAACCTGCCCAATCTGGAGAACCTTTTGAGTCATAGACGCTGGATCTCCCCTCCTCAGGGCGTGTGGAAGATCAATTCGGATGCTTCTTGGTCTGAGGAGAATCAAAGAGGCAGCCTAGGGTGGATTGCTCGTGACTCCAAAGGTTGTCTGATCTATGCGGGTTTCAAGCAATTGAAGTTTAAATGGCCAATTAAATGCCTTGAAATGGAAGCGATCGCTGTGAGTTTAAAGAACTTACTGACTAGAATGGAAAGGTCGCTCCCCCGATTAATAGTTGAAGCTGATTCTTCCGAAGCCATATCGGTTCTTAATCGCTCATCGAAGGACCTATCGGAAGTCAGGGTTTTGGCGAAGAAGGTCGAGGCGTTGGCATCGAGCGTGGGGGAGGTTATCTTCACCTTTAGCCCGCGGGATACAAACACCGAAGTGCACAATTTAGCGCGATTTGCAGCTGCCTTAGAGTTTTCGGGTAGATCTTGCTGGAATTTTTTGGAGTCTTCCATATCGGAAGATGTTTTTTTTTGTATGGGGTTTTTTGCCCCCATGGTTGAACTCTTCGGTTCTGATGAAGAGACTGTGTTTTTCTGGTGTG

Protein sequence

MKNCRDSNLPNLENLLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCWNFLESSISEDVFFCMGFFAPMVELFGSDEETVFFWC

Homology

[Close]

BLAST of Lcy12g012550 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 55/159 (34.59%), Postives = 90/159 (56.60%), Query Frame = 0


Query: 6   DSNLPNLENLLSHR-RWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQ 65
           +++L  L   L+++ +W  PP  +W +N+DASWS+   RG +GWI R   G ++ AG + 
Sbjct: 55  ETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRF 114

Query: 66  LKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEVRVLA 125
           ++    +K LE  AI   L+N LT +    P L +E DS+E  S+LNR  +DL++   + 
Sbjct: 115 VEACNNVKLLEASAILEGLRN-LTNLGVLRP-LHIETDSAEVESLLNRKREDLTKTGWVV 174

Query: 126 KKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFS 164
           +++  L  S   + F    R+TN   H+LA+ A+ L  S
Sbjct: 175 EEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVLRES 211

[Close]

BLAST of Lcy12g012550 vs. ExPASy TrEMBL
Match: A0A6J5WPU6 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20372 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-11
Identity = 48/151 (31.79%), Postives = 76/151 (50.33%), Query Frame = 0


Query: 21  WISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIA 80
           W  PP G+ K+N DA+WS +   G +GW+ RDS G L+ AG +          +E+ AI 
Sbjct: 796 WCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMMELLAIR 855

Query: 81  VSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEVRVLAKKVEALASSVGEVIFT 140
            +L          L  +IVE+DS + I +LN  +   S++  +   +  L +S+  V F 
Sbjct: 856 HALSEC---ANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRVSFV 915

Query: 141 FSPRDTNTEVHNLARFAAALEFSGRSCWNFL 172
           F+PR  N   H++A F +  +  G   W+ L
Sbjct: 916 FAPRSCNQAAHSVAGFVS--KQGGNHVWDHL 941

[Close]

BLAST of Lcy12g012550 vs. ExPASy TrEMBL
Match: A0A6J5VSP2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51717 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-11
Identity = 48/151 (31.79%), Postives = 76/151 (50.33%), Query Frame = 0


Query: 21  WISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIA 80
           W  PP G+ K+NSDA+WS +   G +GW+ RDS G L+ AG +          +E+ AI 
Sbjct: 289 WCKPPPGLLKVNSDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSALMMELLAIR 348

Query: 81  VSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEVRVLAKKVEALASSVGEVIFT 140
            +L          L  +IVE+DS + I +LN  +   S++  +   +  L +S+  V F 
Sbjct: 349 HALSEC---ANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRVSFV 408

Query: 141 FSPRDTNTEVHNLARFAAALEFSGRSCWNFL 172
           F+P   N   H++A F +  +  G   W+ L
Sbjct: 409 FAPSSCNQATHSVAGFVS--KQGGNHVWDHL 434

[Close]

BLAST of Lcy12g012550 vs. ExPASy TrEMBL
Match: A0A4Y1R838 (Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-10
Identity = 49/153 (32.03%), Postives = 75/153 (49.02%), Query Frame = 0


Query: 21  WISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLE-MEAI 80
           W SPP G+ K+N D +W  +  RG +GW+ RD  GC I AG         ++C   + A 
Sbjct: 442 WSSPPPGLVKLNCDGAWVAQTGRGGVGWVLRDGIGCFISAG-----GCGDMRCTSALMAE 501

Query: 81  AVSLKNLLT-RMERSLPRLIVEADSSEAISVLNRSSKDLSEVRVLAKKVEALASSVGEVI 140
           A +++  LT  +E    ++ VE+DS   I +LN+      E+  +   V  L+     V 
Sbjct: 502 AEAVREALTWCLELGFDKVAVESDSLSLIKMLNKEDVVDLEIEGILFDVHCLSHRAHHVE 561

Query: 141 FTFSPRDTNTEVHNLARFAAALEFSGRSCWNFL 172
           F ++PR  N   HN+A  A A    GR  W+ +
Sbjct: 562 FLYAPRKCNQAAHNVA--AYAFRIGGRHSWDIV 587

[Close]

BLAST of Lcy12g012550 vs. ExPASy TrEMBL
Match: A0A251QFD7 (RNase H domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_2G133200 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 45/152 (29.61%), Postives = 75/152 (49.34%), Query Frame = 0


Query: 20  RWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAI 79
           +W  P  GV K+N D +W+ +  +G  GW+ RD  G ++ AG K+ +        E++AI
Sbjct: 51  KWEKPRPGVVKVNCDGTWNAQTMKGGYGWVIRDFVGWMLQAGGKRDRRYGSALIAEVDAI 110

Query: 80  AVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEVRVLAKKVEALASSVGEVIF 139
             +   ++   +     +IVE+DS  AI ++       +EV  L   + A+   + EV F
Sbjct: 111 RAA---VVACQQGGFSHIIVESDSLSAIQMVKGDRVVDAEVEGLLFDIHAVTRELQEVTF 170

Query: 140 TFSPRDTNTEVHNLARFAAALEFSGRSCWNFL 172
           T++PR  N   H +A FA      G   W+F+
Sbjct: 171 TYAPRSCNMAAHEVAAFAC--RNGGLFWWDFI 197

[Close]

BLAST of Lcy12g012550 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 6.8e-14
Identity = 55/159 (34.59%), Postives = 90/159 (56.60%), Query Frame = 0


Query: 6   DSNLPNLENLLSHR-RWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQ 65
           +++L  L   L+++ +W  PP  +W +N+DASWS+   RG +GWI R   G ++ AG + 
Sbjct: 55  ETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRF 114

Query: 66  LKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEVRVLA 125
           ++    +K LE  AI   L+N LT +    P L +E DS+E  S+LNR  +DL++   + 
Sbjct: 115 VEACNNVKLLEASAILEGLRN-LTNLGVLRP-LHIETDSAEVESLLNRKREDLTKTGWVV 174

Query: 126 KKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFS 164
           +++  L  S   + F    R+TN   H+LA+ A+ L  S
Sbjct: 175 EEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVLRES 211

[Close]

BLAST of Lcy12g012550 vs. NCBI nr
Match: XP_015382715.1 (uncharacterized protein LOC107175626 [Citrus sinensis])

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-12
Identity = 51/168 (30.36%), Postives = 84/168 (50.00%), Query Frame = 0


Query: 16  LSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLE 75
           +S +RW  PP+ V K+N DA+ + +NQ+  LG + RDS G ++ AG KQ+ F+  +   E
Sbjct: 260 VSQQRWSPPPKNVLKLNVDAATNNKNQKVGLGAVLRDSNGRVVAAGIKQVSFRKDVSYAE 319

Query: 76  MEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEVRVLAKKVEALASSVG 135
            EAI   L+      E +   LIVE D  +   ++N +    SE+  +  +++       
Sbjct: 320 AEAIQWGLQ---IAKEAAATSLIVETDCKDVAELVNNTKGSRSEIFWIISEIQTQKREFQ 379

Query: 136 EVIFTFSPRDTNTEVHNLARFAAALEFSGRSCWNFLESSISEDVFFCM 184
            + F F PR  N   H+LA+   AL     + W  +     ++VF C+
Sbjct: 380 RIHFNFVPRFCNAHAHSLAKH--ALRKDTAAVWLDILPIEVQNVFDCV 422

[Close]

BLAST of Lcy12g012550 vs. NCBI nr
Match: XP_006491472.1 (uncharacterized protein LOC102626455 [Citrus sinensis])

HSP 1 Score: 82.4 bits (202), Expect = 4.9e-12
Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 0


Query: 16   LSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLE 75
            +  ++W  P Q V K+N DA+ S ++Q+  LG I RD++G ++  G KQ +F+  +   E
Sbjct: 1288 IDQQKWKPPSQNVLKLNVDAAVSTKDQKVGLGAIVRDAEGKILAVGIKQAQFRERVSLAE 1347

Query: 76   MEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEVRVLAKKVEALASSVG 135
             EAI   L+      + S   LIVE+D  E + +LN +    +E+  +   V   +    
Sbjct: 1348 AEAIHWGLQ---VANQISSSSLIVESDCKEVVELLNNTKGSRTEIHWILSDVRRESKEFK 1407

Query: 136  EVIFTFSPRDTNTEVHNLARFAAALEFSGRSCW 169
            +V F+F PR  NT  H LA+F  AL  S    W
Sbjct: 1408 QVQFSFIPRTCNTYAHALAKF--ALRNSSTDVW 1435

[Close]

BLAST of Lcy12g012550 vs. NCBI nr
Match: XP_010689711.1 (PREDICTED: uncharacterized protein LOC104903385 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 82.0 bits (201), Expect = 6.4e-12
Identity = 50/154 (32.47%), Postives = 81/154 (52.60%), Query Frame = 0


Query: 15   LLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCL 74
            + S  RW +PP G  K+NSDAS  ++   G LG +ARDS+G ++++  ++ K  WP +  
Sbjct: 1367 MASSSRWTTPPDGFVKLNSDASIGDDGWIG-LGVVARDSQGKILFSAVRRTKAYWPPEVA 1426

Query: 75   EMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEVRVLAKKVEALASSV 134
            E +A+  +++         L  +++E+DS    + L+R++   S++  +   V AL  S 
Sbjct: 1427 ECKAVHFAIR---LAKSHGLQSVVIESDSQIVTTRLSRAALFYSDLDSILGDVLALCRSF 1486

Query: 135  GEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCW 169
              V F    RD NT  HNLAR    + F    CW
Sbjct: 1487 NSVNFMHVKRDGNTVAHNLAR---VVPFGLEQCW 1513

[Close]

BLAST of Lcy12g012550 vs. NCBI nr
Match: XP_013694754.1 (uncharacterized protein LOC106398790 [Brassica napus])

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-11
Identity = 42/140 (30.00%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 16  LSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLE 75
           +  RRW  PPQG  K N+DA+W +E + G +GW+ RD  G +++AG K+L     +   E
Sbjct: 132 IPERRWTPPPQGKLKCNTDATWMQETEVGGVGWVLRDHNGDMLWAGAKRLPDMGSVHETE 191

Query: 76  MEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEVRVLAKKVEALASSVG 135
           MEA+  +++ L     R+   +  E+DS   + +LN   +    V+ + + + +  S + 
Sbjct: 192 MEALRWAIRTLAGFGYRN---VTFESDSQVLVRMLNNEEEIWPRVKPMIQAISSSPSGME 251

Query: 136 EVIFTFSPRDTNTEVHNLAR 156
           +V   + PR  N   H +A+
Sbjct: 252 KVEVAYYPRSGNKIAHRIAK 268

[Close]

BLAST of Lcy12g012550 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-11
Identity = 44/142 (30.99%), Postives = 76/142 (53.52%), Query Frame = 0


Query: 14  NLLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKC 73
           N  S  RW  PP    K N+DA+W+ +N+R  +GW+ R+ KG + + G + L     +  
Sbjct: 413 NRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLE 472

Query: 74  LEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEVRVLAKKVEALASS 133
            E+EA+  ++ + L+R + +   +I E+DS   I +LN + +    ++   + ++ L S 
Sbjct: 473 AELEAMRWAVLS-LSRFQYNY--VIFESDSQVLIEILN-NDEIWPSLKPTIQDLQRLLSQ 532

Query: 134 VGEVIFTFSPRDTNTEVHNLAR 156
             EV F F PR+ NT    +AR
Sbjct: 533 FTEVKFVFIPREGNTLAERVAR 550

[Close]

BLAST of Lcy12g012550 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-10
Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = 0


Query: 10  PNLENLLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKW 69
           P +E  LS  +W +PP    K N+DA+W  EN R  +GWI R+  G +++ G + L    
Sbjct: 127 PQVERNLS-VQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTK 186

Query: 70  PIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEVRVLAKKVEA 129
            +   E+EA+  +   +LT    +  R+I E+D+   +++LN S      ++   + ++ 
Sbjct: 187 NVLEAELEALRWA---VLTMSRFNYKRIIFESDAQALVNLLN-SDDFWPTLQPALEDIQQ 246

Query: 130 LASSVGEVIFTFSPRDTNTEVHNLAR 156
           L     EV F F+PR  N     +AR
Sbjct: 247 LLHHFEEVKFEFTPRGGNKVADRIAR 267

[Close]

BLAST of Lcy12g012550 vs. TAIR 10
Match: AT2G13980.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.4e-04
Identity = 39/148 (26.35%), Postives = 67/148 (45.27%), Query Frame = 0


Query: 15  LLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQL-KFKWPIKC 74
           ++ + +W +PP    K N DA ++ +N   +  WI R+  G   + G  QL     P++ 
Sbjct: 7   VVHNTKWKAPPDTHIKCNYDAGFNVQNLDSTARWIIRNHDGIAQHWGSLQLDNTSTPLEA 66

Query: 75  LEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKD------LSEVRVLAKKV 134
            E +A+  +L+       R   R+I+E D     ++++ SS        L ++R+ AKK 
Sbjct: 67  -ETKALLAALQQTWI---RGYLRVIMEGDCETLTNLVSGSSSHNHLANLLDDIRIWAKK- 126

Query: 135 EALASSVGEVIFTFSPRDTNTEVHNLAR 156
                    V F+F  R  N   H LA+
Sbjct: 127 ------FSNVQFSFVRRGGNKVAHELAK 143

The following BLAST results are available for this feature:

BLAST of Lcy12g012550 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g012550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	3.3e-14	34.59	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J5WPU6	4.5e-11	31.79	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J5VSP2	4.5e-11	31.79	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51717 PE=4 S...	[more]
A0A4Y1R838	1.0e-10	32.03	Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255...	[more]
A0A251QFD7	1.3e-10	29.61	RNase H domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_2G133200 PE...	[more]

BLAST of Lcy12g012550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	6.8e-14	34.59	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_015382715.1	3.8e-12	30.36	uncharacterized protein LOC107175626 [Citrus sinensis]	[more]
XP_006491472.1	4.9e-12	33.33	uncharacterized protein LOC102626455 [Citrus sinensis]	[more]
XP_010689711.1	6.4e-12	32.47	PREDICTED: uncharacterized protein LOC104903385 [Beta vulgaris subsp. vulgaris]	[more]
XP_013694754.1	3.2e-11	30.00	uncharacterized protein LOC106398790 [Brassica napus]	[more]

BLAST of Lcy12g012550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	4.4e-11	30.99	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	2.2e-10	30.14	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G13980.1	2.4e-04	26.35	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 32..157 e-value: 2.5E-16 score: 59.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 27..159 e-value: 1.0E-10 score: 43.8
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 19..159
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 19..159
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 31..155 e-value: 1.83144E-14 score: 65.028
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 28..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g012550.1	Lcy12g012550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity