Lcy12g012010 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g012010
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Chr12: 39573385 .. 39575723 (+)
RNA-Seq Expression	Lcy12g012010
Synteny	Lcy12g012010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAAAGAGGGAAAAATTAATAAAGCATTTTGATGTTGGACCATATCATGTCTCTCCCTTCTTCACTATCCCCATGATATGATCTTCTTCATTTTCTTGTGTTTCCCCCCCTTAACTTCCACTTGCAAAACTTGTTCTCTCCTCTCTTCACAATCCCAAATCTTTGCCTTTCTTTTGTGTGTAAAATCTTGAGATAGAAAGAGAGAGAGATTTATATTATTTTGCACATATGTCAACAAGTAAAGGCAAGGATGTTGGTGAAGGATCATCATCAAATTCCTCCTCTCTAATCGTTGTCGATCAACAACAACACTTCCAGCAACAGCAGCAGCAACAACAACAACTTGCCCCGGTGAGTCGGTACGAGTCGCAAAAGAGGCGAGATTGGTACACTTTTGGGCAATATTTGAGGAATCAAAGGCCTCCATTGGCAATTTCACAATGCAATTCCACTCATGTGTTGGATTTCCTTCGCTATCTCGACCAATTTGGTAAGACAAAAGTGCATTTAAATGGGTGTGGTTTCTTTGGACAACCTGAGCCACCAGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTCGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCTTCAGAGACTAATCCATTTGCAAGTGGTGCCATTAGGATTTATTTGCGAGAAGTGAGGGACTCTCAATCAAAGGCAAGGGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGAATCCAACCAAGACGGATGAAGGTAAACGATTCAAATACAGAGAGATTTCGCATTAAATCCCCCTTTCTTATTATTACTAGAACTAATCAAATGAATCTTGGAGTGAGAATTTGAACATCCGATTCAATAGCTATGATATCATGTTGTCATTAGACATTTTAGTTTGGAAAATTGAATCTAAAGACTATACGTTCTAGATAGATGCTGAGACATATACCTTGAAATGAATGAACTTAAAGTTTTGTTTTTTCATTCTCATTTTGTTGGGGGAAATTTCAATGTCAACTAGTGAACGACGATATTATATTTTATAAGCAAAGTTTTGAGGATGGGGGCATATATAATGATGTTTAGTGTGTGTGTGCATAAAACCCTAGACCAAGAGCTTCAAAGCCCTAAATTTCATAATACTTGGCTAGGTTATGGTTGGTTGCTTTAGGATATATATGATTAGAGCTCTATAACAATTATTATTACTCTTTAACTTTTTCTTAGACACCTTTTTCTTTTTCAAGAAAGCTAAATCCATTTGTAATATTCGATATAAATCAATAATTGTTTTGTCTTATTTATTTATCTATCTATCTATTAGTCTAATTGTAGAACAATTTGCGCAAAGTTGCTTATTACTTAACTTAGTTTGAGAGACATTAAATTTGATAAGATTAGATAACATATGCAACTGTTTTCTTTTTCTTATAGATCTCTCCTATATGTATAATTCCCATTTTTTTTCTTTTCCTCTGGTTCAATGTTTGCATCATTGTCGTTCCTATATTTTTAAAAGTTTCAATTTTATTCTTGTACTTCGATTTATTACTCTCAGTAGTCCTTACTTTTTATTGAGTGTGTTAAATGTAATGAATAATTGACATGCTTTGATACGACATGAATGTAGTCAACAACGAACACATATATGGGGGTGAGAGATTCAAATCTCTTACTTCTTAACTGATGATATGTGTTTTAATCAATTGAGTTATGTTCAGGCTGGCTACAATAATAATTCATTGAGGTTAATAAACTGAGATACAAATGAAATCGAAACGACACTTTAAAGTTTAGGAATAAAACGTGACGAAAAAGTAGATAGACGAAGGGTCGTATAACACAACGTCTTGCTTTTGTTTTCAGGGGCCTAAAACAACTTCCTAAAGGCTTGATTATGAGCAGTGCATGTGTTTTTGGAGGTGATCTCAGTTGCAATATGGATTCATCTGAAATCAAACACATTGAGATAACTGCAAAGTTCTTTTGAATATTTTGAAGTTTAGTTGTTTTTCTTCCTTACACCTGAAAGCATTGTGTTTTATTTGCTTCTTCAAATTGGAGTTCAGCACAGCCAGTTTCTGGATGAGATCTTCATGTGGGTATGTTGCAAAAATTGCTCCTTTTTCATTTATTGCCTTTTTTCATAAAGATTTTGTGTCAAATTTTATTATATTATTCAGCATGGATTATTAATATCAGTAATTATTAATGTCATTATTCCCTTTCAATATATCCTTTCTGCTTTTTTATTTTTTTTCCAGAGATTCAATGTAGATGATAATATTTTACTCTGCTCACATTTTTATTGAGTCTTG

mRNA sequence

AGAAAAAGAGGGAAAAATTAATAAAGCATTTTGATGTTGGACCATATCATGTCTCTCCCTTCTTCACTATCCCCATGATATGATCTTCTTCATTTTCTTGTGTTTCCCCCCCTTAACTTCCACTTGCAAAACTTGTTCTCTCCTCTCTTCACAATCCCAAATCTTTGCCTTTCTTTTGTGTGTAAAATCTTGAGATAGAAAGAGAGAGAGATTTATATTATTTTGCACATATGTCAACAAGTAAAGGCAAGGATGTTGGTGAAGGATCATCATCAAATTCCTCCTCTCTAATCGTTGTCGATCAACAACAACACTTCCAGCAACAGCAGCAGCAACAACAACAACTTGCCCCGGTGAGTCGGTACGAGTCGCAAAAGAGGCGAGATTGGTACACTTTTGGGCAATATTTGAGGAATCAAAGGCCTCCATTGGCAATTTCACAATGCAATTCCACTCATGTGTTGGATTTCCTTCGCTATCTCGACCAATTTGGTAAGACAAAAGTGCATTTAAATGGGTGTGGTTTCTTTGGACAACCTGAGCCACCAGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTCGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCTTCAGAGACTAATCCATTTGCAAGTGGTGCCATTAGGATTTATTTGCGAGAAGTGAGGGACTCTCAATCAAAGGCAAGGGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGAATCCAACCAAGACGGATGAAGGGGCCTAAAACAACTTCCTAAAGGCTTGATTATGAGCAGTGCATGTGTTTTTGGAGGTGATCTCAGTTGCAATATGGATTCATCTGAAATCAAACACATTGAGATAACTGCAAAGTTCTTTTGAATATTTTGAAGTTTAGTTGTTTTTCTTCCTTACACCTGAAAGCATTGTGTTTTATTTGCTTCTTCAAATTGGAGTTCAGCACAGCCAGTTTCTGGATGAGATCTTCATGTGGGTATGTTGCAAAAATTGCTCCTTTTTCATTTATTGCCTTTTTTCATAAAGATTTTGTGTCAAATTTTATTATATTATTCAGCATGGATTATTAATATCAGTAATTATTAATGTCATTATTCCCTTTCAATATATCCTTTCTGCTTTTTTATTTTTTTTCCAGAGATTCAATGTAGATGATAATATTTTACTCTGCTCACATTTTTATTGAGTCTTG

Coding sequence (CDS)

ATGTCAACAAGTAAAGGCAAGGATGTTGGTGAAGGATCATCATCAAATTCCTCCTCTCTAATCGTTGTCGATCAACAACAACACTTCCAGCAACAGCAGCAGCAACAACAACAACTTGCCCCGGTGAGTCGGTACGAGTCGCAAAAGAGGCGAGATTGGTACACTTTTGGGCAATATTTGAGGAATCAAAGGCCTCCATTGGCAATTTCACAATGCAATTCCACTCATGTGTTGGATTTCCTTCGCTATCTCGACCAATTTGGTAAGACAAAAGTGCATTTAAATGGGTGTGGTTTCTTTGGACAACCTGAGCCACCAGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTCGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCTTCAGAGACTAATCCATTTGCAAGTGGTGCCATTAGGATTTATTTGCGAGAAGTGAGGGACTCTCAATCAAAGGCAAGGGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGAATCCAACCAAGACGGATGAAGGGGCCTAA

Protein sequence

MSTSKGKDVGEGSSSNSSSLIVVDQQQHFQQQQQQQQQLAPVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKKKKKKNPTKTDEGA

Homology

[Close]

BLAST of Lcy12g012010 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.7e-63
Identity = 112/132 (84.85%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 43  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQ 102
           SRYESQKRRDW TFGQYL+NQRPP+ +S C+  HVLDFLRYLDQFGKTKVH+ GC F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 103 PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKA 162
           PEPP PCTCPLRQAWGSLDALIGRLRAAYEENGG  ETNPFASGAIR+YLREVR+ Q+KA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 163 RGIPYKKKKKKK 175
           RGIPYKKKKKKK
Sbjct: 144 RGIPYKKKKKKK 155

[Close]

BLAST of Lcy12g012010 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-59
Identity = 106/146 (72.60%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 37  QQLAPVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNG 96
           Q  A +SRYESQKRRDW TF QYLRN RPPL +++C+  HV++FLRYLDQFGKTKVH +G
Sbjct: 24  QPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASG 83

Query: 97  CGFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREVR 156
           C F+GQP PPGPC CPLRQAWGSLDALIGRLRAAYEE+GG+ E+NPFA+ A+RIYLREVR
Sbjct: 84  CAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVR 143

Query: 157 DSQSKARGIPYKKKKKKKNPTKTDEG 183
           DSQ+KARGIPY+KKK+K++      G
Sbjct: 144 DSQAKARGIPYEKKKRKRSQAAQPAG 169

[Close]

BLAST of Lcy12g012010 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-59
Identity = 106/146 (72.60%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 37  QQLAPVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNG 96
           Q  A +SRYESQKRRDW TF QYLRN RPPL +++C+  HV++FLRYLDQFGKTKVH +G
Sbjct: 24  QPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASG 83

Query: 97  CGFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREVR 156
           C F+GQP PPGPC CPLRQAWGSLDALIGRLRAAYEE+GG+ E+NPFA+ A+RIYLREVR
Sbjct: 84  CAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVR 143

Query: 157 DSQSKARGIPYKKKKKKKNPTKTDEG 183
           DSQ+KARGIPY+KKK+K++      G
Sbjct: 144 DSQAKARGIPYEKKKRKRSQAAQPAG 169

[Close]

BLAST of Lcy12g012010 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-59
Identity = 119/182 (65.38%), Postives = 139/182 (76.37%), Query Frame = 0


Query: 3   TSKGKDVGEGSSSNSSSLIVVDQQQHFQQQQQQQQQLAPVSRYESQKRRDWYTFGQYLRN 62
           ++KGK + EGSS   S      Q Q    Q Q       +SRYESQKRRDW TF QYLRN
Sbjct: 5   SNKGKGIAEGSSQPQS------QPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRN 64

Query: 63  QRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDA 122
           Q+PP+ ISQC S H+LDFL+YLDQFGKTKVH++GC FFGQ EP G C CPL+QAWGSLDA
Sbjct: 65  QQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDA 124

Query: 123 LIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKARGIPYK--KKKKKKNPTKTD 182
           LIGRLRAA+EENGG  E NPFA G IR++LREVRDSQ+KARG+PYK  KK+KK+NP K+ 
Sbjct: 125 LIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSH 180

[Close]

BLAST of Lcy12g012010 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.5e-58
Identity = 103/135 (76.30%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 42  VSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFG 101
           +SRYE+QKRRDW TFGQYLRN RPPL++S+C+  HVL+FLRYLDQFGKTKVH + C FFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 102 QPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSK 161
            P PP PC CPLRQAWGSLDALIGRLRAA+EENGGS ETNPF + A+R+YLREVRDSQ+K
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 162 ARGIPYKKKKKKKNP 177
           ARGI Y+KKK+K+ P
Sbjct: 166 ARGISYEKKKRKRPP 180

[Close]

BLAST of Lcy12g012010 vs. ExPASy TrEMBL
Match: A0A6J1FP48 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111446008 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.9e-88
Identity = 168/183 (91.80%), Postives = 174/183 (95.08%), Query Frame = 0


Query: 1   MSTSKGKDVGEGSSSNSSSLIVVDQQQHFQQQQQQQQQLAPVSRYESQKRRDWYTFGQYL 60
           MSTSKGKDVGEGSSS+SSSL++VD      QQQ QQQQ APVSRYESQKRRDWYTFGQYL
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDN---NQQQHQQQQFAPVSRYESQKRRDWYTFGQYL 60

Query: 61  RNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL 120
           RNQRPPLAISQCNS+HVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPL+QAWGSL
Sbjct: 61  RNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSL 120

Query: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKKKKKKNPTKTD 180
           DALIGRLRAAYEENGGSSETNPFASGAIRIYLRE+RDSQSKARGIPY KKKKKKNPTKTD
Sbjct: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPY-KKKKKKNPTKTD 179

Query: 181 EGA 184
           EGA
Sbjct: 181 EGA 179

[Close]

BLAST of Lcy12g012010 vs. ExPASy TrEMBL
Match: A0A6J1J187 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111480369 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.9e-87
Identity = 167/180 (92.78%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MSTSKGKDVGEGSSSNSSSLIVVDQQQHFQQQQQQQQQLAPVSRYESQKRRDWYTFGQYL 60
           MSTSKGKDVGEGSSS+SSSL++VD      QQQQQQQQLAPVSRYESQKRRDWYTFGQYL
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDN---NQQQQQQQQLAPVSRYESQKRRDWYTFGQYL 60

Query: 61  RNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL 120
           RNQRPPLAISQCNS+HVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL
Sbjct: 61  RNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL 120

Query: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKKKKKKNPTKTD 180
           DALIGRLRAAYEENGGSSETNPFASGAIRIYLRE+RDSQSKARGIPY KKKKKKNPTKT+
Sbjct: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPY-KKKKKKNPTKTN 176

[Close]

BLAST of Lcy12g012010 vs. ExPASy TrEMBL
Match: A0A6J1FB04 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111443674 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.2e-78
Identity = 154/184 (83.70%), Postives = 164/184 (89.13%), Query Frame = 0


Query: 1   MSTSKGKDVGEGSSSN---SSSLIVVDQQQHFQQQQQQQQQLAPVSRYESQKRRDWYTFG 60
           MSTSKG DVGEGSSSN   SSSL+ V   ++    Q     +APVSRYESQKRRDWYTFG
Sbjct: 33  MSTSKGNDVGEGSSSNSSSSSSLVAVINDRN----QPAATAVAPVSRYESQKRRDWYTFG 92

Query: 61  QYLRNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAW 120
           QYLRNQRPPLAISQCNS+HVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPL+QAW
Sbjct: 93  QYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAW 152

Query: 121 GSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKKKKKKNPT 180
           GSLDALIGRLRAAYEENGGSS+TNPFASGAIR+YLREV+DSQSKARGIPYKKKKKKK PT
Sbjct: 153 GSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPT 212

Query: 181 KTDE 182
            T +
Sbjct: 213 HTHQ 212

[Close]

BLAST of Lcy12g012010 vs. ExPASy TrEMBL
Match: A0A5D3DWV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001030 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.9e-78
Identity = 157/196 (80.10%), Postives = 167/196 (85.20%), Query Frame = 0


Query: 1   MSTSKGKDVGEGSSSNSSS-----LIVVDQQQHFQQQQQQQQQ-------LAP---VSRY 60
           MS+SKGKDV EGSSSNSSS     ++VVD Q H     QQQQQ        AP   +SRY
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDEAAPTPVISRY 60

Query: 61  ESQKRRDWYTFGQYLRNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQPEP 120
           ESQKRRDWYTFGQYLRNQRPPLAISQCNS+HVL+FLRYLDQFGKTKVHLNGCGFFG+PEP
Sbjct: 61  ESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEP 120

Query: 121 PGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKARGI 180
            GPCTCPLRQAWGSLDALIGRLRAAYEENGGSS+TNPFASGAIR+YLREVRDSQSKARGI
Sbjct: 121 AGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGI 180

Query: 181 PYKKKKKKKNPTKTDE 182
           PYKKKKKKK P  T +
Sbjct: 181 PYKKKKKKKIPINTHQ 196

[Close]

BLAST of Lcy12g012010 vs. ExPASy TrEMBL
Match: A0A1S3CJY2 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103501807 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.9e-78
Identity = 157/196 (80.10%), Postives = 167/196 (85.20%), Query Frame = 0


Query: 1   MSTSKGKDVGEGSSSNSSS-----LIVVDQQQHFQQQQQQQQQ-------LAP---VSRY 60
           MS+SKGKDV EGSSSNSSS     ++VVD Q H     QQQQQ        AP   +SRY
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDEAAPTPVISRY 60

Query: 61  ESQKRRDWYTFGQYLRNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQPEP 120
           ESQKRRDWYTFGQYLRNQRPPLAISQCNS+HVL+FLRYLDQFGKTKVHLNGCGFFG+PEP
Sbjct: 61  ESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEP 120

Query: 121 PGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKARGI 180
            GPCTCPLRQAWGSLDALIGRLRAAYEENGGSS+TNPFASGAIR+YLREVRDSQSKARGI
Sbjct: 121 AGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGI 180

Query: 181 PYKKKKKKKNPTKTDE 182
           PYKKKKKKK P  T +
Sbjct: 181 PYKKKKKKKIPINTHQ 196

[Close]

BLAST of Lcy12g012010 vs. NCBI nr
Match: KAG6607912.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 334.7 bits (857), Expect = 4.9e-88
Identity = 169/183 (92.35%), Postives = 175/183 (95.63%), Query Frame = 0


Query: 1   MSTSKGKDVGEGSSSNSSSLIVVDQQQHFQQQQQQQQQLAPVSRYESQKRRDWYTFGQYL 60
           MSTSKGKDVGEGSSS+SSSL++VD      QQQ QQQQLAPVSRYESQKRRDWYTFGQYL
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDN---NQQQHQQQQLAPVSRYESQKRRDWYTFGQYL 60

Query: 61  RNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL 120
           RNQRPPLAISQCNS+HVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPL+QAWGSL
Sbjct: 61  RNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSL 120

Query: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKKKKKKNPTKTD 180
           DALIGRLRAAYEENGGSSETNPFASGAIRIYLRE+RDSQSKARGIPY KKKKKKNPTKTD
Sbjct: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPY-KKKKKKNPTKTD 179

Query: 181 EGA 184
           EGA
Sbjct: 181 EGA 179

[Close]

BLAST of Lcy12g012010 vs. NCBI nr
Match: XP_022940383.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 168/183 (91.80%), Postives = 174/183 (95.08%), Query Frame = 0


Query: 1   MSTSKGKDVGEGSSSNSSSLIVVDQQQHFQQQQQQQQQLAPVSRYESQKRRDWYTFGQYL 60
           MSTSKGKDVGEGSSS+SSSL++VD      QQQ QQQQ APVSRYESQKRRDWYTFGQYL
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDN---NQQQHQQQQFAPVSRYESQKRRDWYTFGQYL 60

Query: 61  RNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL 120
           RNQRPPLAISQCNS+HVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPL+QAWGSL
Sbjct: 61  RNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSL 120

Query: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKKKKKKNPTKTD 180
           DALIGRLRAAYEENGGSSETNPFASGAIRIYLRE+RDSQSKARGIPY KKKKKKNPTKTD
Sbjct: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPY-KKKKKKNPTKTD 179

Query: 181 EGA 184
           EGA
Sbjct: 181 EGA 179

[Close]

BLAST of Lcy12g012010 vs. NCBI nr
Match: KAG7037439.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 332.8 bits (852), Expect = 1.9e-87
Identity = 168/183 (91.80%), Postives = 175/183 (95.63%), Query Frame = 0


Query: 1   MSTSKGKDVGEGSSSNSSSLIVVDQQQHFQQQQQQQQQLAPVSRYESQKRRDWYTFGQYL 60
           MSTSKGKDVGEGSSS+SSSL++VD      QQQ QQQQLAPVSRYESQKRRDWYTFGQYL
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDN---NQQQHQQQQLAPVSRYESQKRRDWYTFGQYL 60

Query: 61  RNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL 120
           RNQRPPLAISQCNS+HVLDFLRYLDQFGKTKVHL+GCGFFGQPEPPGPCTCPL+QAWGSL
Sbjct: 61  RNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLDGCGFFGQPEPPGPCTCPLKQAWGSL 120

Query: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKKKKKKNPTKTD 180
           DALIGRLRAAYEENGGSSETNPFASGAIRIYLRE+RDSQSKARGIPY KKKKKKNPTKTD
Sbjct: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPY-KKKKKKNPTKTD 179

Query: 181 EGA 184
           EGA
Sbjct: 181 EGA 179

[Close]

BLAST of Lcy12g012010 vs. NCBI nr
Match: XP_023524645.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 331.3 bits (848), Expect = 5.4e-87
Identity = 167/183 (91.26%), Postives = 173/183 (94.54%), Query Frame = 0


Query: 1   MSTSKGKDVGEGSSSNSSSLIVVDQQQHFQQQQQQQQQLAPVSRYESQKRRDWYTFGQYL 60
           MSTSKG DVGEGSSS+SSSL++VD      QQQ QQQQL PVSRYESQKRRDWYTFGQYL
Sbjct: 1   MSTSKGNDVGEGSSSSSSSLVIVDDN---NQQQHQQQQLVPVSRYESQKRRDWYTFGQYL 60

Query: 61  RNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL 120
           RNQRPPLAISQCNS+HVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPL+QAWGSL
Sbjct: 61  RNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSL 120

Query: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKKKKKKNPTKTD 180
           DALIGRLRAAYEENGGSSETNPFASGAIRIYLRE+RDSQSKARGIPY KKKKKKNPTKTD
Sbjct: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPY-KKKKKKNPTKTD 179

Query: 181 EGA 184
           EGA
Sbjct: 181 EGA 179

[Close]

BLAST of Lcy12g012010 vs. NCBI nr
Match: XP_022981128.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 167/180 (92.78%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MSTSKGKDVGEGSSSNSSSLIVVDQQQHFQQQQQQQQQLAPVSRYESQKRRDWYTFGQYL 60
           MSTSKGKDVGEGSSS+SSSL++VD      QQQQQQQQLAPVSRYESQKRRDWYTFGQYL
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDN---NQQQQQQQQLAPVSRYESQKRRDWYTFGQYL 60

Query: 61  RNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL 120
           RNQRPPLAISQCNS+HVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL
Sbjct: 61  RNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL 120

Query: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKKKKKKNPTKTD 180
           DALIGRLRAAYEENGGSSETNPFASGAIRIYLRE+RDSQSKARGIPY KKKKKKNPTKT+
Sbjct: 121 DALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPY-KKKKKKNPTKTN 176

[Close]

BLAST of Lcy12g012010 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 241.9 bits (616), Expect = 4.0e-64
Identity = 112/132 (84.85%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 43  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQ 102
           SRYESQKRRDW TFGQYL+NQRPP+ +S C+  HVLDFLRYLDQFGKTKVH+ GC F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 103 PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKA 162
           PEPP PCTCPLRQAWGSLDALIGRLRAAYEENGG  ETNPFASGAIR+YLREVR+ Q+KA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 163 RGIPYKKKKKKK 175
           RGIPYKKKKKKK
Sbjct: 144 RGIPYKKKKKKK 155

[Close]

BLAST of Lcy12g012010 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 241.9 bits (616), Expect = 4.0e-64
Identity = 112/132 (84.85%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 43  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQ 102
           SRYESQKRRDW TFGQYL+NQRPP+ +S C+  HVLDFLRYLDQFGKTKVH+ GC F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 103 PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKA 162
           PEPP PCTCPLRQAWGSLDALIGRLRAAYEENGG  ETNPFASGAIR+YLREVR+ Q+KA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 163 RGIPYKKKKKKK 175
           RGIPYKKKKKKK
Sbjct: 144 RGIPYKKKKKKK 155

[Close]

BLAST of Lcy12g012010 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 229.9 bits (585), Expect = 1.6e-60
Identity = 119/182 (65.38%), Postives = 139/182 (76.37%), Query Frame = 0


Query: 3   TSKGKDVGEGSSSNSSSLIVVDQQQHFQQQQQQQQQLAPVSRYESQKRRDWYTFGQYLRN 62
           ++KGK + EGSS   S      Q Q    Q Q       +SRYESQKRRDW TF QYLRN
Sbjct: 5   SNKGKGIAEGSSQPQS------QPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRN 64

Query: 63  QRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDA 122
           Q+PP+ ISQC S H+LDFL+YLDQFGKTKVH++GC FFGQ EP G C CPL+QAWGSLDA
Sbjct: 65  QQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDA 124

Query: 123 LIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSKARGIPYK--KKKKKKNPTKTD 182
           LIGRLRAA+EENGG  E NPFA G IR++LREVRDSQ+KARG+PYK  KK+KK+NP K+ 
Sbjct: 125 LIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSH 180

[Close]

BLAST of Lcy12g012010 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-59
Identity = 103/135 (76.30%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 42  VSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGFFG 101
           +SRYE+QKRRDW TFGQYLRN RPPL++S+C+  HVL+FLRYLDQFGKTKVH + C FFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 102 QPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQSK 161
            P PP PC CPLRQAWGSLDALIGRLRAA+EENGGS ETNPF + A+R+YLREVRDSQ+K
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 162 ARGIPYKKKKKKKNP 177
           ARGI Y+KKK+K+ P
Sbjct: 166 ARGISYEKKKRKRPP 180

[Close]

BLAST of Lcy12g012010 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 221.1 bits (562), Expect = 7.4e-58
Identity = 100/140 (71.43%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 40  APVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSTHVLDFLRYLDQFGKTKVHLNGCGF 99
           A  SRYESQKRRDW TF QYL+N +PPLA+S+C+  HV++FL+YLDQFGKTKVH+  C +
Sbjct: 27  ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPY 86

Query: 100 FGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREVRDSQ 159
           FG  +PP PC+CPL+QAWGSLDALIGRLRAAYEENGG  ++NPFA+ A+RIYLREVR+SQ
Sbjct: 87  FGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQ 146

Query: 160 SKARGIPYKKKKKKKNPTKT 180
           +KARGIPY+KKK+K+ PT T
Sbjct: 147 AKARGIPYEKKKRKRPPTVT 166

The following BLAST results are available for this feature:

BLAST of Lcy12g012010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	5.7e-63	84.85	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
A2XED8	2.2e-59	72.60	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	2.2e-59	72.60	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
Q9ZVA0	2.2e-59	65.38	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	2.5e-58	76.30	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of Lcy12g012010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FP48	6.9e-88	91.80	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1J187	5.9e-87	92.78	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1FB04	2.2e-78	83.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A5D3DWV8	2.9e-78	80.10	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CJY2	2.9e-78	80.10	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Lcy12g012010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607912.1	4.9e-88	92.35	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_022940383.1	1.4e-87	91.80	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]
KAG7037439.1	1.9e-87	91.80	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_023524645.1	5.4e-87	91.26	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]	[more]
XP_022981128.1	1.2e-86	92.78	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima]	[more]

BLAST of Lcy12g012010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	4.0e-64	84.85	Protein of unknown function (DUF640)	[more]
AT2G42610.2	4.0e-64	84.85	Protein of unknown function (DUF640)	[more]
AT1G78815.1	1.6e-60	65.38	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.8e-59	76.30	Protein of unknown function (DUF640)	[more]
AT1G07090.1	7.4e-58	71.43	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 35..157 e-value: 7.5E-63 score: 210.3
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 44..171 score: 76.826149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 2..181
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 2..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g012010.1	Lcy12g012010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus