Lcy12g011700 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g011700
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr12: 39236018 .. 39236317 (-)
RNA-Seq Expression	Lcy12g011700
Synteny	Lcy12g011700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGAGCATATAGGACAAATAATATCAATATTAATACCTCTATTTTTAAGATTGATTTTTGTTGGTGCGAGAGGAAGAAATACGGCGGCATCGGATGGATACTCCGGCGAAGTGATGGAACCCCTGTTATAGCCGGCTTCAAGGTCATCAGGCGGCAATGGAGAGTACCTTGGTTGGAAGCCCTAGCGTTAGTTGATGGGCTGAAATCAATACCTCAAATTTATTCCAAATTGATTACCGAGCTTGACTCAGTGCAGGTGGTAAATCAGCTAGAAGGAAAGGAGGAAGATATTTAA

mRNA sequence

ATGGTTAGAGCATATAGGACAAATAATATCAATATTAATACCTCTATTTTTAAGATTGATTTTTGTTGGTGCGAGAGGAAGAAATACGGCGGCATCGGATGGATACTCCGGCGAAGTGATGGAACCCCTGTTATAGCCGGCTTCAAGGTCATCAGGCGGCAATGGAGAGTACCTTGGTTGGAAGCCCTAGCGTTAGTTGATGGGCTGAAATCAATACCTCAAATTTATTCCAAATTGATTACCGAGCTTGACTCAGTGCAGGTGGTAAATCAGCTAGAAGGAAAGGAGGAAGATATTTAA

Coding sequence (CDS)

ATGGTTAGAGCATATAGGACAAATAATATCAATATTAATACCTCTATTTTTAAGATTGATTTTTGTTGGTGCGAGAGGAAGAAATACGGCGGCATCGGATGGATACTCCGGCGAAGTGATGGAACCCCTGTTATAGCCGGCTTCAAGGTCATCAGGCGGCAATGGAGAGTACCTTGGTTGGAAGCCCTAGCGTTAGTTGATGGGCTGAAATCAATACCTCAAATTTATTCCAAATTGATTACCGAGCTTGACTCAGTGCAGGTGGTAAATCAGCTAGAAGGAAAGGAGGAAGATATTTAA

Protein sequence

MVRAYRTNNININTSIFKIDFCWCERKKYGGIGWILRRSDGTPVIAGFKVIRRQWRVPWLEALALVDGLKSIPQIYSKLITELDSVQVVNQLEGKEEDI

Homology

[Close]

BLAST of Lcy12g011700 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-04
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 20  DFCWCERKKYGGIGWILRRSDGTPVIAGFKVIRRQWRVPWLEALALVDGLKSIPQ--IYS 79
           D  W +    GGIGWI+R  DG  V+AG + +     V  LEA A+++GL+++    +  
Sbjct: 84  DASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLR 143

Query: 80  KLITELDSVQVVNQLEGKEEDI 100
            L  E DS +V + L  K ED+
Sbjct: 144 PLHIETDSAEVESLLNRKREDL 165

[Close]

BLAST of Lcy12g011700 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-04
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 20  DFCWCERKKYGGIGWILRRSDGTPVIAGFKVIRRQWRVPWLEALALVDGLKSIPQ--IYS 79
           D  W +    GGIGWI+R  DG  V+AG + +     V  LEA A+++GL+++    +  
Sbjct: 84  DASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLR 143

Query: 80  KLITELDSVQVVNQLEGKEEDI 100
            L  E DS +V + L  K ED+
Sbjct: 144 PLHIETDSAEVESLLNRKREDL 165

The following BLAST results are available for this feature:

BLAST of Lcy12g011700 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g011700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	2.6e-04	36.59	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Lcy12g011700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	5.3e-04	36.59	uncharacterized protein LOC111022403 [Momordica charantia]	[more]

BLAST of Lcy12g011700 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 22..97 e-value: 7.0E-9 score: 35.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 17..98 e-value: 3.4E-5 score: 25.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g011700.1	Lcy12g011700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity