Lcy12g011540 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g011540
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Fibrosin like 1
Location	Chr12: 39039591 .. 39040196 (-)
RNA-Seq Expression	Lcy12g011540
Synteny	Lcy12g011540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTCACCAACACCATCACATCATTTCCTAATTTCCCACGGGCAACCCGAACACACGAGCAAAGAGAAAAAGGAAGAAGAAGAAGAAGGCAACGACGACGATGAATTCAAAAGCAACAACAACACCAAGAATAATGCTTTTGATCGTCGTGGCCGCGATGGTTGCTGCGAGCATCGCCCTGCTTCCGATGGCAACGGATGCGCACGTTATTCCGACCGTCGGTCCGGTCGCTGATTGCATCAAGGGCTGCACAGGGTCATTGACAAGTTTAACGCCTGGTTATTGCCTGAGTATATGTCAAGCTGAGTTCGTTGTACCAAGAGTACATCCTCATCCTCATCCACATCCTCATCCTCACCCTCACCCTCACCCTCATCCTCATCCTCATCCTCATGCCGAAGCTCAGGCAGGCTCAGGCTCAGCCTGATGCTATTGCACCAAACTAAGATTGGTGTCTTCTCTATTCATTTCCATTAATGGGCTATGATGTTGCAGTCATTTGACTTGCCTTCATTGATTTTCCTTTTTCATTGTAAGCTACTCAAAAAGCCATTTGCTTTGCTGTATGTGTTCTCAAAAATTGCCTATTATATGTTGGTTTGGTA

mRNA sequence

ATTCTCACCAACACCATCACATCATTTCCTAATTTCCCACGGGCAACCCGAACACACGAGCAAAGAGAAAAAGGAAGAAGAAGAAGAAGGCAACGACGACGATGAATTCAAAAGCAACAACAACACCAAGAATAATGCTTTTGATCGTCGTGGCCGCGATGGTTGCTGCGAGCATCGCCCTGCTTCCGATGGCAACGGATGCGCACGTTATTCCGACCGTCGGTCCGGTCGCTGATTGCATCAAGGGCTGCACAGGGTCATTGACAAGTTTAACGCCTGGTTATTGCCTGAGTATATGTCAAGCTGAGTTCGTTGTACCAAGAGTACATCCTCATCCTCATCCACATCCTCATCCTCACCCTCACCCTCACCCTCATCCTCATCCTCATCCTCATGCCGAAGCTCAGGCAGGCTCAGGCTCAGCCTGATGCTATTGCACCAAACTAAGATTGGTGTCTTCTCTATTCATTTCCATTAATGGGCTATGATGTTGCAGTCATTTGACTTGCCTTCATTGATTTTCCTTTTTCATTGTAAGCTACTCAAAAAGCCATTTGCTTTGCTGTATGTGTTCTCAAAAATTGCCTATTATATGTTGGTTTGGTA

Coding sequence (CDS)

ATGAATTCAAAAGCAACAACAACACCAAGAATAATGCTTTTGATCGTCGTGGCCGCGATGGTTGCTGCGAGCATCGCCCTGCTTCCGATGGCAACGGATGCGCACGTTATTCCGACCGTCGGTCCGGTCGCTGATTGCATCAAGGGCTGCACAGGGTCATTGACAAGTTTAACGCCTGGTTATTGCCTGAGTATATGTCAAGCTGAGTTCGTTGTACCAAGAGTACATCCTCATCCTCATCCACATCCTCATCCTCACCCTCACCCTCACCCTCATCCTCATCCTCATCCTCATGCCGAAGCTCAGGCAGGCTCAGGCTCAGCCTGA

Protein sequence

MNSKATTTPRIMLLIVVAAMVAASIALLPMATDAHVIPTVGPVADCIKGCTGSLTSLTPGYCLSICQAEFVVPRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA

Homology

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BLAST of Lcy12g011540 vs. ExPASy Swiss-Prot
Match: P49907 (Selenoprotein P OS=Bos taurus OX=9913 GN=SELENOP PE=2 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 0


Query: 76  HPHPHPHPHPHPHPHPHPHPHPH 99
           HPHPH HPHPHPHPHPHPHPHPH
Sbjct: 206 HPHPHSHPHPHPHPHPHPHPHPH 228

[Close]

BLAST of Lcy12g011540 vs. ExPASy Swiss-Prot
Match: Q8WV24 (Pleckstrin homology-like domain family A member 1 OS=Homo sapiens OX=9606 GN=PHLDA1 PE=1 SV=4)

HSP 1 Score: 47.8 bits (112), Expect = 9.3e-05
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 67  QAEFVVPRVHPHPHPHPHPHPHPHPHPHPHPH 99
           Q + + P  HPHPHPH HPH HPHPHPHPHPH
Sbjct: 344 QPQQLHPYPHPHPHPHSHPHSHPHPHPHPHPH 375

[Close]

BLAST of Lcy12g011540 vs. ExPASy Swiss-Prot
Match: Q8MP30 (Uncharacterized histidine-rich protein DDB_G0274557 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0274557 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 24/30 (80.00%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 73  PRVHPHPHPHPH----PHPHPHPHPHPHPH 99
           P  HPHPHPHPH    PHPHPHPHPHPHPH
Sbjct: 159 PHPHPHPHPHPHLHPNPHPHPHPHPHPHPH 188

[Close]

BLAST of Lcy12g011540 vs. ExPASy Swiss-Prot
Match: Q62392 (Pleckstrin homology-like domain family A member 1 OS=Mus musculus OX=10090 GN=Phlda1 PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 6.0e-04
Identity = 23/28 (82.14%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 73  PRVHPHP--HPHPHPHPHPHPHPHPHPH 99
           P  HPHP  HPH HPHPHPHPHPHPHPH
Sbjct: 350 PHPHPHPYSHPHQHPHPHPHPHPHPHPH 377

[Close]

BLAST of Lcy12g011540 vs. ExPASy Swiss-Prot
Match: I1S0E2 (Developmental regulatory protein wetA OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=wetA PE=2 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 6.0e-04
Identity = 24/32 (75.00%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 76  HPHPHPHPH---PHPHPHPHPHPHPHAEAQAG 105
           HPHPHPHPH    H HPHPHPHPHPH +A AG
Sbjct: 314 HPHPHPHPHHPQAHTHPHPHPHPHPHQQAVAG 345

[Close]

BLAST of Lcy12g011540 vs. ExPASy TrEMBL
Match: A0A3S5AE82 (Uncharacterized protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS20436 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.7e-06
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 37  IPTVGPVAD-------CIKGCTGSLTSLTPGYCLSICQAEFVVPRVHPHPHPHPHPHPHP 96
           +PT  P+++        ++ C  +   L+  Y   I       P  HPHPHPHPHPHPHP
Sbjct: 121 VPTTKPISETRASDQSLVRTCLFATLHLSEDYLSPIYSDPHPYPHPHPHPHPHPHPHPHP 180

Query: 97  HPHPHPHPHAEAQAGS 106
           HPHPHPHPH+ + + S
Sbjct: 181 HPHPHPHPHSHSYSHS 196

[Close]

BLAST of Lcy12g011540 vs. ExPASy TrEMBL
Match: A0A3B4BSE1 (Ependymin-like OS=Pygocentrus nattereri OX=42514 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.3e-05
Identity = 27/39 (69.23%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 60 GYCLSICQAEFVVPRVHPHPHPHPHPHPHPHPHPHPHPH 99
          G     C  E   P  HPHPHPHPHPHPHPHPHPHPHPH
Sbjct: 11 GLLAESCSGESSHPHPHPHPHPHPHPHPHPHPHPHPHPH 49

[Close]

BLAST of Lcy12g011540 vs. ExPASy TrEMBL
Match: A0A6J2ST63 (nuclear factor of activated T-cells 5 isoform X4 OS=Drosophila hydei OX=7224 GN=LOC111603230 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.4e-05
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 73   PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA 109
            P  HPHPHPHPHPHPHPHPHPHPHP  + Q+ S +A
Sbjct: 1095 PHTHPHPHPHPHPHPHPHPHPHPHPQQQQQSASAAA 1130

[Close]

BLAST of Lcy12g011540 vs. ExPASy TrEMBL
Match: A0A6J2SNP6 (uncharacterized protein LOC111603230 isoform X2 OS=Drosophila hydei OX=7224 GN=LOC111603230 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.4e-05
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 73   PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA 109
            P  HPHPHPHPHPHPHPHPHPHPHP  + Q+ S +A
Sbjct: 1308 PHTHPHPHPHPHPHPHPHPHPHPHPQQQQQSASAAA 1343

[Close]

BLAST of Lcy12g011540 vs. ExPASy TrEMBL
Match: A0A6J2SSW0 (uncharacterized protein LOC111603230 isoform X1 OS=Drosophila hydei OX=7224 GN=LOC111603230 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.4e-05
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 73   PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA 109
            P  HPHPHPHPHPHPHPHPHPHPHP  + Q+ S +A
Sbjct: 1361 PHTHPHPHPHPHPHPHPHPHPHPHPQQQQQSASAAA 1396

[Close]

BLAST of Lcy12g011540 vs. NCBI nr
Match: KAG6607883.1 (hypothetical protein SDJN03_01225, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 7.1e-10
Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 1  MNSKATTTPRIMLLIVVAAMVAASIALLPMATDAHVIPTVGPVADCIKGCTGSLTSLTPG 60
          MNSK T+T    +LI++AA+ A +I LLPM  +AH IPTVG +  CIK C  SL SL P 
Sbjct: 1  MNSKTTST----MLIIIAAIAAVTIVLLPMPAEAH-IPTVGVIPKCIKSCLSSLQSLGPS 60

Query: 61 YCLSICQAEFVVPRVHPHPHPHPHPHPHPHPH 93
          YC  +C+AEF  PR H H H H H H    PH
Sbjct: 61 YCSDLCKAEFPPPR-HQHQHQHRHRHRRSQPH 86

[Close]

BLAST of Lcy12g011540 vs. NCBI nr
Match: KAG6591952.1 (hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024824.1 hypothetical protein SDJN02_13643, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-07
Identity = 48/109 (44.04%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 1   MNSKATTTPRIMLLIVVAAMVAASIALLPMATDAHVIPTVGPVADCIKGCTGSLTSLTPG 60
           MNS   +TPR +L++V   +    + LLPMA +A  +P  G V+ CI+GCT SL  LT G
Sbjct: 1   MNS-TKSTPRRVLIVVTMMVALIIVGLLPMAAEA-TVPAGGAVSQCIQGCTKSLAGLTSG 60

Query: 61  YCLSICQAEFVVPRVHPHPHPHPHPHPH----------PHPHPHPHPHA 100
           YCL++C AEF     HPH H H H H H           H H H H HA
Sbjct: 61  YCLTLCSAEFHPLSAHPHHHEHDHSHAHVRVDAHAHVDDHGHVHAHVHA 107

[Close]

BLAST of Lcy12g011540 vs. NCBI nr
Match: VEL26996.1 (unnamed protein product [Protopolystoma xenopodis])

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 37  IPTVGPVAD-------CIKGCTGSLTSLTPGYCLSICQAEFVVPRVHPHPHPHPHPHPHP 96
           +PT  P+++        ++ C  +   L+  Y   I       P  HPHPHPHPHPHPHP
Sbjct: 121 VPTTKPISETRASDQSLVRTCLFATLHLSEDYLSPIYSDPHPYPHPHPHPHPHPHPHPHP 180

Query: 97  HPHPHPHPHAEAQAGS 106
           HPHPHPHPH+ + + S
Sbjct: 181 HPHPHPHPHSHSYSHS 196

[Close]

BLAST of Lcy12g011540 vs. NCBI nr
Match: KAG6297019.1 (hypothetical protein E4U09_001502 [Claviceps aff. purpurea])

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 73   PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAG 105
            PR+HPHPHPHPHPHPHPHPHPHPHPH   Q G
Sbjct: 985  PRLHPHPHPHPHPHPHPHPHPHPHPHPHPQYG 1016

[Close]

BLAST of Lcy12g011540 vs. NCBI nr
Match: XP_030079328.1 (uncharacterized protein LOC111603230 isoform X2 [Drosophila hydei])

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 73   PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA 109
            P  HPHPHPHPHPHPHPHPHPHPHP  + Q+ S +A
Sbjct: 1308 PHTHPHPHPHPHPHPHPHPHPHPHPQQQQQSASAAA 1343

[Close]

BLAST of Lcy12g011540 vs. TAIR 10
Match: AT3G18535.1 (tubulin-tyrosine ligases )

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-08
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 73  PRVHPHPHPHPHPHPHPHPHPHPHPHAE 101
           P  HPHPHPHPHPHPHPHPHPHPHPH E
Sbjct: 234 PHPHPHPHPHPHPHPHPHPHPHPHPHPE 261

The following BLAST results are available for this feature:

BLAST of Lcy12g011540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49907	5.5e-05	95.65	Selenoprotein P OS=Bos taurus OX=9913 GN=SELENOP PE=2 SV=2	[more]
Q8WV24	9.3e-05	71.88	Pleckstrin homology-like domain family A member 1 OS=Homo sapiens OX=9606 GN=PHL...	[more]
Q8MP30	1.2e-04	80.00	Uncharacterized histidine-rich protein DDB_G0274557 OS=Dictyostelium discoideum ...	[more]
Q62392	6.0e-04	82.14	Pleckstrin homology-like domain family A member 1 OS=Mus musculus OX=10090 GN=Ph...	[more]
I1S0E2	6.0e-04	75.00	Developmental regulatory protein wetA OS=Gibberella zeae (strain ATCC MYA-4620 /...	[more]

BLAST of Lcy12g011540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3S5AE82	6.7e-06	42.11	Uncharacterized protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS20436...	[more]
A0A3B4BSE1	4.3e-05	69.23	Ependymin-like OS=Pygocentrus nattereri OX=42514 PE=3 SV=1	[more]
A0A6J2ST63	7.4e-05	72.22	nuclear factor of activated T-cells 5 isoform X4 OS=Drosophila hydei OX=7224 GN=...	[more]
A0A6J2SNP6	7.4e-05	72.22	uncharacterized protein LOC111603230 isoform X2 OS=Drosophila hydei OX=7224 GN=L...	[more]
A0A6J2SSW0	7.4e-05	72.22	uncharacterized protein LOC111603230 isoform X1 OS=Drosophila hydei OX=7224 GN=L...	[more]

BLAST of Lcy12g011540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607883.1	7.1e-10	52.17	hypothetical protein SDJN03_01225, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6591952.1	3.3e-07	44.04	hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sorori...	[more]
VEL26996.1	1.4e-05	42.11	unnamed protein product [Protopolystoma xenopodis]	[more]
KAG6297019.1	3.1e-05	84.38	hypothetical protein E4U09_001502 [Claviceps aff. purpurea]	[more]
XP_030079328.1	1.5e-04	72.22	uncharacterized protein LOC111603230 isoform X2 [Drosophila hydei]	[more]

BLAST of Lcy12g011540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18535.1	5.4e-08	89.29	tubulin-tyrosine ligases	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g011540.1	Lcy12g011540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048468	cell development
biological_process	GO:0007399	nervous system development
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0009605	response to external stimulus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding