Lcy12g011270 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g011270
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein of unknown function (DUF1218)
Location	Chr12: 38742428 .. 38744823 (+)
RNA-Seq Expression	Lcy12g011270
Synteny	Lcy12g011270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCACTACCAAGATGTTGAGACGTTCTTTTCTCTTTCTAATTTTGCTTCTTCTTCACTGTTTTCATCAGAACAGAGCTTCCTCTCTGCTCCTCATATAAACCCCAACCACAAAACGGACGCAGACATTGCTGAATCTGCACAACAACACAGTAGAAACAGGTCACAGAGCAGATCTCAGGTTAAAAAAAGCTTTGAAGCTGAGCATTTCGTCAATCAATGGCTTCCAAATTGATTCTCATTATAGTTTTTGTACTTGACGTTATTGCTTTTGGCCTGGCTGTTGCCGCTGAGCAAAGAAGAAGCACTGTAAGCTTCAGTTTCTCTCTCGCTCCATTGTCGCTTTCTTTTCTGCTTTTCACTGCAAATTTGTCAATTTGGGGGTTTTTTGCTTTCTGGGTCTGTTTGGTTTCTGTGATTCTGTTTGTGGGTCGTTCTGGTTTTGCTCAAATTGCTATTGGAGAATCGAGAATCGATGAGAGAAGAATCTTGCATTTTCTGTGTTTTTCTTGCCTTTCTGCTTCAAATTACTTCGTTCATTGCTGATAATGTGGTATCGATCCATCTATTAGGGTCAGTAAATCGTTGCTTTAGTTATTGAAGAGCAGGAAAATGGAAATTGGTATTGGGGAGAATTGTTTTTCTTTAGTTATGAAGATTATGTTTAATGTCAGAGGAAAGTTGAGGAGATTGTTGACATTTTCATGATTCAAAGCAAACTAACTAAGAATATAGTTCAATAATGGCCGATTTGAGCATAGTTCAATTGGTTAAGGCATTTATTTTCTCGATCAAAGTTATTGAACTCAAAAATATAGTTCAATAGTGACTATGCTTTGGGTCTTCTAAAATGCAATTCTGAACTTTTCTGAAATGAAGTACAAGGGAACTTCCATAGATTTTTCTGTTTCTTGATAAGCACAATTACTTCATAAAGGTCTAGGCGTTTGCTTTCGATCTAGACAATGGTAAAATTGAGACAACTCTTCTCTTGTGTTCCACCATCACTCACTCATTCACATTGCTATGAATCTGATCTTGCTGACAAGCTTTATCAAGTGGAAGCCTTTATATTAGAATAAGCTGGAGATCGTAAACTCGATAACTGGTTTTGTTTCACACCCTTTTGGTTCCTTCTTTACTTGAAAGATCAAAGAGTTGGTTTCAACTGATAAGTAATGTCTATATGATAGACTGACATAGGGTTTGATCCATTTGGTACATTGTTTTTTAGTGTTGTTGGTAAACTAATCGGCTAATTGGTTCATTGTGAAGAAGTAACAGCATTGTGTATTTATCGTCTGATAACAGGCCTGGATTGTGCAAGATAGAGAAAAGGATTACAATCATTGTGCCTACGCCTCTGATATCTCGACAGGTTATGGCGTCGGTGCTTTTCTGCTTCTCATGGCCAGCCAGGCCCTCATAATGGGAGCTAGCCGATGTTTTTGTTGCGGTAAATCGTTGAATCCTGGAGGTTCAAGGGCCTGGGCTGTTATCCTATTCATAACCTGCTGGTAAGTGAACCTATTTGATCTTCCACTCCATCAGTTTAAGCCTTGAGCAGAAAGCTTCAAACTAAAGGGTCCCAATCCAATACACACAATCTTGCAGGGTGTTTTTCTTCATCGCTGAGGTTTGCTTGTTTGCGGGTTCGGTAAGGAACGCCTACCACACCAAGTACCGAACCATGTTCGGCGAGGATCCTCCCTCGTGCCAAACTTTGAGGAAGGGAGTTTTTGGTGCAGGTGCAGCCTTCATTTTCTTCAATGCCATTGTATCTGAACTCTACTATGTATTCTACTCCAAGGCAAGAGAAGGCTTCCTTCCATACGGCGGAGAGACTGGCGTCGGCATGGGAACCTACAAATGAGTGTATGTGTAGTTAAGTCTAGTAGGTTTTCTTCACCTTCTATGATTCGATTTCGAGATAATTTTGATCAAATACTGGTTTTAGTTAGGAAGAAAATGTCAGTCAGTATCATAATTCTTACTCTGTGAAGTTCTCTGTTTTCTCTCCCTTTTAACCACTGCTGGGCTTTTCTTTTCTTTTTCTTTTTGTTGGATTGTTACATTTGTATTGACAATAAGAGAAACATTGGTTGTATTCCTATAAATATTTGTATCTTTTATGGAATCTCAGGTTGTTTGATAATACAGCAGAAAAGACTTGGAAAATTGATGCCTCTTCCACATCCAAATAACCCAAATTTTGCAGCAAAATCTCTCTTTTCCCTCTCTCTGATCATTCATGGAAAATTATTCTTCTTTAGTGTTCTTCTCATGGCCCAATATAAGGTCCTGTTTGGCACCCATTAAAAGGGGATATAGTAATGATTATGTAAAATTATAAAAGGTTTTTTTTTTTTAAACAAATAATAATAATAATAATGAAAG

mRNA sequence

AGCCACTACCAAGATGTTGAGACGTTCTTTTCTCTTTCTAATTTTGCTTCTTCTTCACTGTTTTCATCAGAACAGAGCTTCCTCTCTGCTCCTCATATAAACCCCAACCACAAAACGGACGCAGACATTGCTGAATCTGCACAACAACACAGTAGAAACAGGTCACAGAGCAGATCTCAGGTTAAAAAAAGCTTTGAAGCTGAGCATTTCGTCAATCAATGGCTTCCAAATTGATTCTCATTATAGTTTTTGTACTTGACGTTATTGCTTTTGGCCTGGCTGTTGCCGCTGAGCAAAGAAGAAGCACTGCCTGGATTGTGCAAGATAGAGAAAAGGATTACAATCATTGTGCCTACGCCTCTGATATCTCGACAGGTTATGGCGTCGGTGCTTTTCTGCTTCTCATGGCCAGCCAGGCCCTCATAATGGGAGCTAGCCGATGTTTTTGTTGCGGTAAATCGTTGAATCCTGGAGGTTCAAGGGCCTGGGCTGTTATCCTATTCATAACCTGCTGGGTGTTTTTCTTCATCGCTGAGGTTTGCTTGTTTGCGGGTTCGGTAAGGAACGCCTACCACACCAAGTACCGAACCATGTTCGGCGAGGATCCTCCCTCGTGCCAAACTTTGAGGAAGGGAGTTTTTGGTGCAGGTGCAGCCTTCATTTTCTTCAATGCCATTGTATCTGAACTCTACTATGTATTCTACTCCAAGGCAAGAGAAGGCTTCCTTCCATACGGCGGAGAGACTGGCGTCGGCATGGGAACCTACAAATGAGTGTTGTTTGATAATACAGCAGAAAAGACTTGGAAAATTGATGCCTCTTCCACATCCAAATAACCCAAATTTTGCAGCAAAATCTCTCTTTTCCCTCTCTCTGATCATTCATGGAAAATTATTCTTCTTTAGTGTTCTTCTCATGGCCCAATATAAGGTCCTGTTTGGCACCCATTAAAAGGGGATATAGTAATGATTATGTAAAATTATAAAAGGTTTTTTTTTTTTAAACAAATAATAATAATAATAATGAAAG

Coding sequence (CDS)

ATGGCTTCCAAATTGATTCTCATTATAGTTTTTGTACTTGACGTTATTGCTTTTGGCCTGGCTGTTGCCGCTGAGCAAAGAAGAAGCACTGCCTGGATTGTGCAAGATAGAGAAAAGGATTACAATCATTGTGCCTACGCCTCTGATATCTCGACAGGTTATGGCGTCGGTGCTTTTCTGCTTCTCATGGCCAGCCAGGCCCTCATAATGGGAGCTAGCCGATGTTTTTGTTGCGGTAAATCGTTGAATCCTGGAGGTTCAAGGGCCTGGGCTGTTATCCTATTCATAACCTGCTGGGTGTTTTTCTTCATCGCTGAGGTTTGCTTGTTTGCGGGTTCGGTAAGGAACGCCTACCACACCAAGTACCGAACCATGTTCGGCGAGGATCCTCCCTCGTGCCAAACTTTGAGGAAGGGAGTTTTTGGTGCAGGTGCAGCCTTCATTTTCTTCAATGCCATTGTATCTGAACTCTACTATGTATTCTACTCCAAGGCAAGAGAAGGCTTCCTTCCATACGGCGGAGAGACTGGCGTCGGCATGGGAACCTACAAATGA

Protein sequence

MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFLLLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHTKYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGMGTYK

Homology

[Close]

BLAST of Lcy12g011270 vs. ExPASy TrEMBL
Match: A0A0A0L071 (Fiber protein Fb34 OS=Cucumis sativus OX=3659 GN=Csa_4G638370 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 6.7e-91
Identity = 168/184 (91.30%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MASKLILIIVFVLD+IAFGLAVAAEQRRSTA +VQD+EK+YN+C Y SDISTGYGVGAFL
Sbjct: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQ LIM ASRCFCCGKSL+PGGSRAWAVILFI CWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSCQTLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lcy12g011270 vs. ExPASy TrEMBL
Match: A0A5A7VBE4 (DUF1218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003790 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.8e-89
Identity = 167/184 (90.76%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MASKLILIIVFVLDVIAFGLAVAAEQRRSTA +VQD+EKDYN+C Y SD+STGYGVGAFL
Sbjct: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTANVVQDKEKDYNYCVYDSDVSTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQ LIM ASRCFCCGKSL+PGGSRA AVILFI CWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRASAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSC+TLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCRTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lcy12g011270 vs. ExPASy TrEMBL
Match: A0A1S3BTB6 (uncharacterized protein LOC103493502 OS=Cucumis melo OX=3656 GN=LOC103493502 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.8e-89
Identity = 167/184 (90.76%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MASKLILIIVFVLDVIAFGLAVAAEQRRSTA +VQD+EKDYN+C Y SD+STGYGVGAFL
Sbjct: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTANVVQDKEKDYNYCVYDSDVSTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQ LIM ASRCFCCGKSL+PGGSRA AVILFI CWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRASAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSC+TLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCRTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lcy12g011270 vs. ExPASy TrEMBL
Match: A0A6J1IJW2 (uncharacterized protein LOC111476938 OS=Cucurbita maxima OX=3661 GN=LOC111476938 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.3e-89
Identity = 165/184 (89.67%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MASKL+LIIV VLDVIAFGLAVAAEQRRSTA +V D EK+YN+C Y SD+STGYGVGAFL
Sbjct: 1   MASKLVLIIVIVLDVIAFGLAVAAEQRRSTANVVPDSEKNYNYCVYDSDVSTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQALIM ASRCFCCGKSL+PGGSRAWA+ILFI CWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQALIMVASRCFCCGKSLSPGGSRAWAIILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSCQTLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lcy12g011270 vs. ExPASy TrEMBL
Match: A0A6J1F6H9 (uncharacterized protein LOC111442584 OS=Cucurbita moschata OX=3662 GN=LOC111442584 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.3e-89
Identity = 165/184 (89.67%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MASKL+LIIV VLDVIAFGLAVAAEQRRSTA +V D EK+YN+C Y SDISTGYGVGAFL
Sbjct: 1   MASKLVLIIVIVLDVIAFGLAVAAEQRRSTANVVPDSEKNYNYCVYDSDISTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQALIM ASRCFCCGKSL+PGGSRAWA+ILFI CWVFFFIAEVCLFAGS+RNAYHT
Sbjct: 61  LLMASQALIMVASRCFCCGKSLSPGGSRAWAIILFIICWVFFFIAEVCLFAGSIRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSCQTLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lcy12g011270 vs. NCBI nr
Match: XP_031740219.1 (uncharacterized protein LOC101208795 [Cucumis sativus] >XP_031740220.1 uncharacterized protein LOC101208795 [Cucumis sativus] >KGN55148.1 hypothetical protein Csa_012625 [Cucumis sativus])

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-90
Identity = 168/184 (91.30%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MASKLILIIVFVLD+IAFGLAVAAEQRRSTA +VQD+EK+YN+C Y SDISTGYGVGAFL
Sbjct: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQ LIM ASRCFCCGKSL+PGGSRAWAVILFI CWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSCQTLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lcy12g011270 vs. NCBI nr
Match: XP_038900268.1 (uncharacterized protein LOC120087350 [Benincasa hispida])

HSP 1 Score: 342.4 bits (877), Expect = 2.4e-90
Identity = 169/184 (91.85%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MASKLILIIVFVLDVIAFGLAVAAEQRRSTA +VQD+EK+YN+C Y SDISTGYGVGAFL
Sbjct: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQ LIM ASRCFCCGKSL+PGGSRAWAVILFI CWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQTLIMVASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSCQTLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lcy12g011270 vs. NCBI nr
Match: XP_008452482.1 (PREDICTED: uncharacterized protein LOC103493502 [Cucumis melo] >KAA0064347.1 DUF1218 domain-containing protein [Cucumis melo var. makuwa] >TYK20240.1 DUF1218 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.8 bits (865), Expect = 5.8e-89
Identity = 167/184 (90.76%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MASKLILIIVFVLDVIAFGLAVAAEQRRSTA +VQD+EKDYN+C Y SD+STGYGVGAFL
Sbjct: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTANVVQDKEKDYNYCVYDSDVSTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQ LIM ASRCFCCGKSL+PGGSRA AVILFI CWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRASAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSC+TLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCRTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lcy12g011270 vs. NCBI nr
Match: XP_022976585.1 (uncharacterized protein LOC111476938 [Cucurbita maxima] >XP_022976586.1 uncharacterized protein LOC111476938 [Cucurbita maxima])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 165/184 (89.67%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MASKL+LIIV VLDVIAFGLAVAAEQRRSTA +V D EK+YN+C Y SD+STGYGVGAFL
Sbjct: 1   MASKLVLIIVIVLDVIAFGLAVAAEQRRSTANVVPDSEKNYNYCVYDSDVSTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQALIM ASRCFCCGKSL+PGGSRAWA+ILFI CWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQALIMVASRCFCCGKSLSPGGSRAWAIILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSCQTLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lcy12g011270 vs. NCBI nr
Match: XP_022935762.1 (uncharacterized protein LOC111442584 [Cucurbita moschata] >XP_023535137.1 uncharacterized protein LOC111796652 [Cucurbita pepo subsp. pepo] >KAG6591977.1 hypothetical protein SDJN03_14323, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024853.1 hypothetical protein SDJN02_13672 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 165/184 (89.67%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MASKL+LIIV VLDVIAFGLAVAAEQRRSTA +V D EK+YN+C Y SDISTGYGVGAFL
Sbjct: 1   MASKLVLIIVIVLDVIAFGLAVAAEQRRSTANVVPDSEKNYNYCVYDSDISTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQALIM ASRCFCCGKSL+PGGSRAWA+ILFI CWVFFFIAEVCLFAGS+RNAYHT
Sbjct: 61  LLMASQALIMVASRCFCCGKSLSPGGSRAWAIILFIICWVFFFIAEVCLFAGSIRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSCQTLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lcy12g011270 vs. TAIR 10
Match: AT4G27435.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 246.1 bits (627), Expect = 2.2e-65
Identity = 123/173 (71.10%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MASK++  IVFV ++IAFGLAVAAEQRRSTA +VQD E  YN+C Y SD +TGYGVGAFL
Sbjct: 1   MASKIVSAIVFVFNLIAFGLAVAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
             +ASQ LIM  SRCFCCGK L PGGSRA A+ILFI  W+FF IAE+CL AGSV NAYHT
Sbjct: 61  FSVASQILIMLVSRCFCCGKPLKPGGSRALALILFIVSWMFFLIAEICLLAGSVENAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFL-PY 173
           KYRTMF ++PP CQTLRKGVF AGA+F+FFNAIVS+ YY FY  A E  L PY
Sbjct: 121 KYRTMFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYYFFYFSAAEASLSPY 173

[Close]

BLAST of Lcy12g011270 vs. TAIR 10
Match: AT3G15480.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 241.9 bits (616), Expect = 4.1e-64
Identity = 115/170 (67.65%), Postives = 139/170 (81.76%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MASKL++IIVF+LD+IA GLA+AAEQRRS   +  DR+K Y++C Y +DI+T YG GAF+
Sbjct: 1   MASKLVVIIVFILDLIAVGLAIAAEQRRSVGKVETDRDKQYDYCVYGTDIATSYGAGAFV 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
           LL  SQ LIM ASRCFCCGKSLNPGGSRA A+ILF+ CWVFF IAE+CL A S+RNAYHT
Sbjct: 61  LLFVSQVLIMAASRCFCCGKSLNPGGSRACAIILFLICWVFFLIAEMCLLAASIRNAYHT 120

Query: 121 KYRTMFG-EDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGF 170
           +YR M+  EDPPSC+ +RKGVF AGAAF  F AIVS+ YYV YS+AR+ +
Sbjct: 121 QYRKMWKVEDPPSCEVIRKGVFAAGAAFTLFTAIVSQFYYVCYSRARDAY 170

[Close]

BLAST of Lcy12g011270 vs. TAIR 10
Match: AT1G52910.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 238.8 bits (608), Expect = 3.4e-63
Identity = 112/170 (65.88%), Postives = 138/170 (81.18%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MASKL++IIVF+LD+IA GLA+AAEQRRS   +V D EK++ HC Y SDI+T YG GAF+
Sbjct: 1   MASKLVIIIVFILDLIAVGLAIAAEQRRSVGKVVPDGEKEFEHCEYGSDIATSYGAGAFV 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
           LL  SQ +IM ASRCFCCGK+L PGGSRA  ++LF+ CWVFF IAEVCL AGS+RNAYHT
Sbjct: 61  LLFISQVIIMVASRCFCCGKALKPGGSRACGIMLFLICWVFFLIAEVCLLAGSIRNAYHT 120

Query: 121 KYRTMFG-EDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGF 170
            YR M+  E+PPSC+ +RKGVF AGA+F  F AIVS+ YY+ YS+AR+G+
Sbjct: 121 TYRRMWNIENPPSCEVIRKGVFAAGASFALFTAIVSQFYYISYSRARDGY 170

[Close]

BLAST of Lcy12g011270 vs. TAIR 10
Match: AT1G61065.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 231.1 bits (588), Expect = 7.2e-61
Identity = 112/167 (67.07%), Postives = 135/167 (80.84%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFL 60
           MAS L+L++VFV D+IAFGLAVAAEQRR+T W +    +D ++C Y  DI+TG GVG+FL
Sbjct: 1   MASVLLLLLVFVFDLIAFGLAVAAEQRRTT-WQISRESRDLSYCVYDKDIATGLGVGSFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHT 120
           +L+ASQ LIM ASRC CCG++L P GSR+WA+ LFIT WVFFFIA+VCL AGSVRNAYHT
Sbjct: 61  VLLASQLLIMVASRCLCCGRALTPSGSRSWAIFLFITTWVFFFIAQVCLLAGSVRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKARE 168
           KYR  FG   PSC++LRKGVFGAGAAFI    IVSELYYV  S+A++
Sbjct: 121 KYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVTLSRAKD 166

[Close]

BLAST of Lcy12g011270 vs. TAIR 10
Match: AT1G13380.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-40
Identity = 75/164 (45.73%), Postives = 112/164 (68.29%), Query Frame = 0


Query: 2   ASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGAFLL 61
           AS L+ I+V  L ++AFG ++AAE+RRS    +QD   +   C Y SD++TGYGVGAFL 
Sbjct: 6   ASTLVFILVVALSLVAFGFSIAAERRRSIGKSIQDPITNTTFCVYDSDVATGYGVGAFLF 65

Query: 62  LMASQALIMGASRCFCCGKSLNPGGSRAWAVILFITCWVFFFIAEVCLFAGSVRNAYHTK 121
           L++S++L+M  ++C C G+ L PG  RAW++I FI+ W+ F +AE C+ AG+ +NAYHTK
Sbjct: 66  LLSSESLLMSVTKCMCFGRPLAPGSDRAWSIIYFISSWMTFLVAEACVIAGATKNAYHTK 125

Query: 122 YRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKA 166
           Y         SC +LRKG+F AGA FI    +++  YY++++K+
Sbjct: 126 Y---LSSQTFSCASLRKGIFIAGAVFIVATMVLNVYYYMYFTKS 166

The following BLAST results are available for this feature:

BLAST of Lcy12g011270 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g011270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L071	6.7e-91	91.30	Fiber protein Fb34 OS=Cucumis sativus OX=3659 GN=Csa_4G638370 PE=4 SV=1	[more]
A0A5A7VBE4	2.8e-89	90.76	DUF1218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BTB6	2.8e-89	90.76	uncharacterized protein LOC103493502 OS=Cucumis melo OX=3656 GN=LOC103493502 PE=...	[more]
A0A6J1IJW2	6.3e-89	89.67	uncharacterized protein LOC111476938 OS=Cucurbita maxima OX=3661 GN=LOC111476938...	[more]
A0A6J1F6H9	6.3e-89	89.67	uncharacterized protein LOC111442584 OS=Cucurbita moschata OX=3662 GN=LOC1114425...	[more]

BLAST of Lcy12g011270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740219.1	1.4e-90	91.30	uncharacterized protein LOC101208795 [Cucumis sativus] >XP_031740220.1 uncharact...	[more]
XP_038900268.1	2.4e-90	91.85	uncharacterized protein LOC120087350 [Benincasa hispida]	[more]
XP_008452482.1	5.8e-89	90.76	PREDICTED: uncharacterized protein LOC103493502 [Cucumis melo] >KAA0064347.1 DUF...	[more]
XP_022976585.1	1.3e-88	89.67	uncharacterized protein LOC111476938 [Cucurbita maxima] >XP_022976586.1 uncharac...	[more]
XP_022935762.1	1.3e-88	89.67	uncharacterized protein LOC111442584 [Cucurbita moschata] >XP_023535137.1 unchar...	[more]

BLAST of Lcy12g011270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27435.1	2.2e-65	71.10	Protein of unknown function (DUF1218)	[more]
AT3G15480.1	4.1e-64	67.65	Protein of unknown function (DUF1218)	[more]
AT1G52910.1	3.4e-63	65.88	Protein of unknown function (DUF1218)	[more]
AT1G61065.1	7.2e-61	67.07	Protein of unknown function (DUF1218)	[more]
AT1G13380.1	3.1e-40	45.73	Protein of unknown function (DUF1218)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Modifying wall lignin-1/2	PFAM	PF06749	DUF1218	coord: 58..152 e-value: 4.5E-28 score: 97.6
None	No IPR available	PANTHER	PTHR31769	OS07G0462200 PROTEIN-RELATED	coord: 1..184
None	No IPR available	PANTHER	PTHR31769:SF56	SUBFAMILY NOT NAMED	coord: 1..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g011270.1	Lcy12g011270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane