Lcy12g010550 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g010550
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr12: 37840689 .. 37842200 (-)
RNA-Seq Expression	Lcy12g010550
Synteny	Lcy12g010550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGAAAAATTAGGATCATACATTTTTCTTTTTCGATTAAAAATCACTTTTGGTTGATGAACTTTCGTGAAAATAATAATTTAGTCCATAAACTTTGATTTATATAACGATTTAGGTCTTTGTACTTTCAAATTTATAACAATTTAATTAGTTCGTTAATTTTAATAAGTAACAATTTAGTCTCTGTATTTTCTAATTTGTAACAATTAATTAATCCTTGTTGCAAAAAATTTCATCAAAATTAAATATTGATTTTTATTATTTAGTGATTCGACTTTGTAGCTTACAAACATGTATTGGGTCCCAAATTAGTTATTGATCTATCTATGTAGTAAGTTTCATTAAATCTCTTAATGTTTCTTTTCAAAAAAAAAAAAAAAAAAATCTCTTAATGTTAATTTTCACGATAGAGGCTAAATCGTTACAAATTTTAAAGTACAAGGATTAAATTATTACATATGAAATTTTAGGGACTAAATTGTTAAAATTGAAAAGGTTAAATTATTAAATATGCCCCTAGACTATGGGGTAAGTTTCAATTATACCCCTGGAGTTTTAAAAGTTTCAATTATACCCTTGGAGTTTCAAGTTTGTTTCAAAATTGTCCTTCAAAACTCTTCTCCGTTAAAATGTTTAACGTCTGTGAGTGTCCTCTGACTTTGGCAACAAATTGTGTAAAAATAAAATCCATAGCCTCTAAAAAAACTGAAATTAGTTTTAGGGTTAGGGAAAAAAAACGGTTGGTTTTAATCATGGGGTTTTCGGATTTTTATAGGCCTCTTGATGGTGGGAAGAATTCGGAAATTTCTGATGATGTTGTTGATGATGATGGTGGTTTTGATGATTCGCGGCCGCCGAAGGAGGAGGGCGACGGCGGCGGAGGCGGTGGAGCTACTAAGATTTTAGATGAAAAAGGAACGAGTGAGTTTTTTTTTCAGTTTTAGGTTTTAGACGTACGAAGAATTTAGTAAATCGATTAAGGAAAATTTTGTTAGTGAGAGATTGGATTCGTTGAGTAACAGATATGAGTTTTTGTCGGAGAAGAGTACGAGCCACTTTGTGGAAGAAGCTAAAATTCCGAGCTTTAAGGTGGAGGTTTTGAATTTTTCTGTTGGAGAATTTTTAGGAAAAGTTTTGGAATCTGAAGCTGTTGATGAGGGAATTGCAGACTGCTCTGCTGATGGAAGAGAGGAATTTTTCGGGAAAATTCTTGAATTTGATGCTGTTAAGGAAGAACAAATTACAAATAGCTCTGGAAATGAAGGAGAAGAATTTTCTGGGAAAGTTTCAGAATCCGAACTTATTGACGAAGAAGACAATATAGAGAGCTCTAGAGAAGGACAAACTTCAGGAAAACAGAGGAAATTGAAACGGAGAGATGAAGAAGACAATGACTTTCTAAGGGAAACCGATTTCGCCGGTTCCGACACTGACGACGTCGACGTCAGAGGCAAGTTTCTCTCCAATTTCAGTTTCGATTTGAACGTGGGGGGGGGGGTACGATCCTGA

mRNA sequence

ATGGTGGAGGTTTTGAATTTTTCTGTTGGAGAATTTTTAGGAAAAGTTTTGGAATCTGAAGCTGTTGATGAGGGAATTGCAGACTGCTCTGCTGATGGAAGAGAGGAATTTTTCGGGAAAATTCTTGAATTTGATGCTGTTAAGGAAGAACAAATTACAAATAGCTCTGGAAATGAAGGAGAAGAATTTTCTGGGAAAGTTTCAGAATCCGAACTTATTGACGAAGAAGACAATATAGAGAGCTCTAGAGAAGGACAAACTTCAGGAAAACAGAGGAAATTGAAACGGAGAGATGAAGAAGACAATGACTTTCTAAGGGAAACCGATTTCGCCGGTTCCGACACTGACGACGTCGACGTCAGAGGCAAGTTTCTCTCCAATTTCAGTTTCGATTTGAACGTGGGGGGGGGGGTACGATCCTGA

Coding sequence (CDS)

ATGGTGGAGGTTTTGAATTTTTCTGTTGGAGAATTTTTAGGAAAAGTTTTGGAATCTGAAGCTGTTGATGAGGGAATTGCAGACTGCTCTGCTGATGGAAGAGAGGAATTTTTCGGGAAAATTCTTGAATTTGATGCTGTTAAGGAAGAACAAATTACAAATAGCTCTGGAAATGAAGGAGAAGAATTTTCTGGGAAAGTTTCAGAATCCGAACTTATTGACGAAGAAGACAATATAGAGAGCTCTAGAGAAGGACAAACTTCAGGAAAACAGAGGAAATTGAAACGGAGAGATGAAGAAGACAATGACTTTCTAAGGGAAACCGATTTCGCCGGTTCCGACACTGACGACGTCGACGTCAGAGGCAAGTTTCTCTCCAATTTCAGTTTCGATTTGAACGTGGGGGGGGGGGTACGATCCTGA

Protein sequence

MVEVLNFSVGEFLGKVLESEAVDEGIADCSADGREEFFGKILEFDAVKEEQITNSSGNEGEEFSGKVSESELIDEEDNIESSREGQTSGKQRKLKRRDEEDNDFLRETDFAGSDTDDVDVRGKFLSNFSFDLNVGGGVRS

Homology

[Close]

BLAST of Lcy12g010550 vs. ExPASy TrEMBL
Match: A0A0A0LHR8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G826700 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.7e-12
Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 0


Query: 2   VEVLNFSV--------GEFLGKVLESEAVDEGIADCS-ADGREEFFGKILEFDAVKEEQI 61
           VEVLN  +         E  GKVLE E V + I +CS  DG EE  GK  +F+AV+EE+ 
Sbjct: 131 VEVLNSCLNHGVLGNESEVSGKVLEHEIVSQEITECSTVDGTEEVSGKFFKFEAVEEEKP 190

Query: 62  TNSSGNEGEEFSGKVSESELIDEEDNIESSREGQTSGKQRKLKRRDEEDNDFLRETDFAG 121
                +E EE +            +   + +E  +   Q + +  +EEDNDFL+ETDFAG
Sbjct: 191 FTKFEDEEEEIT------------ERFRNEKEESSPKIQSEEEEEEEEDNDFLKETDFAG 250

Query: 122 SDTD-DVDVRGKFLSNFSFDLNVGGG 138
           SD+D DVD+ G+FLS+  FDL+   G
Sbjct: 251 SDSDADVDIGGRFLSDTDFDLDFKTG 264

[Close]

BLAST of Lcy12g010550 vs. ExPASy TrEMBL
Match: A0A5D3DPP5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G008090 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 2   VEVLNF--------SVGEFLGKVLESEAVDEGIADCSA-DGREEFFGKILEFDAVKEEQI 61
           VEVLN         +  EF GKVLE E V + I + SA +G EE  GK L+F+AV+EE+ 
Sbjct: 142 VEVLNSCSNHEILGNENEFSGKVLEHEIVGQEITEGSAVNGTEEVSGKFLKFEAVEEERP 201

Query: 62  TNSSGNEGEEFSGKVSESELIDEEDNIESSREGQTSGKQRKLKRRDEEDNDFLRETDFAG 121
                ++         E E+++   N +     +   ++ + +  +EEDNDFL+ETDFAG
Sbjct: 202 FTKFEDD---------EEEIMERFRNEKEESSWKIQSEEEEEEEEEEEDNDFLKETDFAG 261

Query: 122 SDTD-DVDVRGKFLSNFSFDLNVGGG 138
           SD+D DVD+ G+FLS+  FDL+   G
Sbjct: 262 SDSDADVDIGGRFLSDTDFDLDFKTG 278

[Close]

BLAST of Lcy12g010550 vs. ExPASy TrEMBL
Match: A0A5A7UHN5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001360 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 2   VEVLNF--------SVGEFLGKVLESEAVDEGIADCSA-DGREEFFGKILEFDAVKEEQI 61
           VEVLN         +  EF GKVLE E V + I + SA +G EE  GK L+F+AV+EE+ 
Sbjct: 142 VEVLNSCSNHEILGNENEFSGKVLEHEIVGQEITEGSAVNGTEEVSGKFLKFEAVEEERP 201

Query: 62  TNSSGNEGEEFSGKVSESELIDEEDNIESSREGQTSGKQRKLKRRDEEDNDFLRETDFAG 121
                ++         E E+++   N +     +   ++ + +  +EEDNDFL+ETDFAG
Sbjct: 202 FTKFEDD---------EEEIMERFRNEKEESSWKIQSEEEEEEEEEEEDNDFLKETDFAG 261

Query: 122 SDTD-DVDVRGKFLSNFSFDLNVGGG 138
           SD+D DVD+ G+FLS+  FDL+   G
Sbjct: 262 SDSDADVDIGGRFLSDTDFDLDFKTG 278

[Close]

BLAST of Lcy12g010550 vs. ExPASy TrEMBL
Match: A0A6J1F8X7 (uncharacterized protein LOC111441903 OS=Cucurbita moschata OX=3662 GN=LOC111441903 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-09
Identity = 56/132 (42.42%), Postives = 69/132 (52.27%), Query Frame = 0


Query: 6   NFSVGEFLGKVLESEAVDEGIADCSADGREEFFGKILEFDAVKEEQITNSSGNEGEEFSG 65
           NFSV E  GKVLESE     + DC +DG EEF GKIL+F+AV E +IT +S N GE+ S 
Sbjct: 144 NFSVREVSGKVLESE-----VTDCFSDGTEEFSGKILKFEAVGEGEITETSVNGGEQISE 203

Query: 66  KVSESELIDEEDNIESSREGQTSGKQRKLKRRDEEDNDFLRETDFAGSDTDDVDVRGKFL 125
           K SE E                          +EEDN+F + +D   SDT  VDV G F 
Sbjct: 204 KQSEEE------------------------EEEEEDNEFRQSSD---SDT-GVDVGGGFP 242

Query: 126 SNFSFDLNVGGG 138
           S+   DL +  G
Sbjct: 264 SDLDLDLELETG 242

[Close]

BLAST of Lcy12g010550 vs. ExPASy TrEMBL
Match: A0A6J1BVT2 (uncharacterized protein LOC111005168 OS=Momordica charantia OX=3673 GN=LOC111005168 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-08
Identity = 59/142 (41.55%), Postives = 78/142 (54.93%), Query Frame = 0


Query: 6   NFSVGEFLGKVLESEAVDEGIADCSADGREE-FFGKILEFDAVKEEQITNSSGNEGEEFS 65
           +F V EF GK+ ESE++ E I + S  G EE F GK      V EE+IT SS N  EEF 
Sbjct: 153 DFPVEEFPGKIPESESIGEEITESSVYGGEEGFSGK------VSEEEITQSSANGNEEFP 212

Query: 66  GKVSESELIDEEDN--------IESSR--EGQTSGKQRKLKRRDEEDNDFLRETDFAGSD 125
           GKVSE E+ +   N        I  S+  E + + KQRK+++R EE+ +   E DF GSD
Sbjct: 213 GKVSEEEITECSANGKEEFSGKISESKPVEDEITEKQRKVEQRVEEEEE-EEEEDFTGSD 272

Query: 126 TDDVDVRGKFLSNFSFDLNVGG 137
           +D         S+  FD +VGG
Sbjct: 273 SD---------SDSGFDFHVGG 278

[Close]

BLAST of Lcy12g010550 vs. NCBI nr
Match: XP_038905369.1 (uncharacterized protein LOC120091420 [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-17
Identity = 67/137 (48.91%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 6   NFSVGEFLGKVLESEAVDEGIADCSADGREEFFGKILEFDAVKEEQITNSSGNEGEEFSG 65
           +FSV EF   VLE EAVD+ I + SADG EEF  KIL+F+ ++          EG+ F  
Sbjct: 161 DFSVREFSELVLEFEAVDQEITESSADGTEEFSEKILKFEVIE----------EGKTFPV 220

Query: 66  KVSESELIDEEDNIESSREGQTSGKQR---KLKRRDEEDNDFLRETDFAGSDTD-DVDVR 125
           +VS+S+ I+EE+  E   E  T+GK+    K++R +EEDNDFLRETDF GSD+D D+D+ 
Sbjct: 221 EVSKSQPIEEEE--EEITESFTNGKEESSGKIQREEEEDNDFLRETDFNGSDSDGDIDIG 280

Query: 126 GKFLSNFSFDLN--VGG 137
           G+FLS+  FDL+  +GG
Sbjct: 281 GRFLSDTDFDLDFKIGG 285

[Close]

BLAST of Lcy12g010550 vs. NCBI nr
Match: XP_031739052.1 (uncharacterized protein LOC101211770 isoform X2 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 9.8e-12
Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 0


Query: 2   VEVLNFSV--------GEFLGKVLESEAVDEGIADCS-ADGREEFFGKILEFDAVKEEQI 61
           VEVLN  +         E  GKVLE E V + I +CS  DG EE  GK  +F+AV+EE+ 
Sbjct: 131 VEVLNSCLNHGVLGNESEVSGKVLEHEIVSQEITECSTVDGTEEVSGKFFKFEAVEEEKP 190

Query: 62  TNSSGNEGEEFSGKVSESELIDEEDNIESSREGQTSGKQRKLKRRDEEDNDFLRETDFAG 121
                +E EE +            +   + +E  +   Q + +  +EEDNDFL+ETDFAG
Sbjct: 191 FTKFEDEEEEIT------------ERFRNEKEESSPKIQSEEEEEEEEDNDFLKETDFAG 250

Query: 122 SDTD-DVDVRGKFLSNFSFDLNVGGG 138
           SD+D DVD+ G+FLS+  FDL+   G
Sbjct: 251 SDSDADVDIGGRFLSDTDFDLDFKTG 264

[Close]

BLAST of Lcy12g010550 vs. NCBI nr
Match: XP_011652238.1 (uncharacterized protein LOC101211770 isoform X1 [Cucumis sativus] >KGN59576.1 hypothetical protein Csa_001432 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 9.8e-12
Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 0


Query: 2   VEVLNFSV--------GEFLGKVLESEAVDEGIADCS-ADGREEFFGKILEFDAVKEEQI 61
           VEVLN  +         E  GKVLE E V + I +CS  DG EE  GK  +F+AV+EE+ 
Sbjct: 131 VEVLNSCLNHGVLGNESEVSGKVLEHEIVSQEITECSTVDGTEEVSGKFFKFEAVEEEKP 190

Query: 62  TNSSGNEGEEFSGKVSESELIDEEDNIESSREGQTSGKQRKLKRRDEEDNDFLRETDFAG 121
                +E EE +            +   + +E  +   Q + +  +EEDNDFL+ETDFAG
Sbjct: 191 FTKFEDEEEEIT------------ERFRNEKEESSPKIQSEEEEEEEEDNDFLKETDFAG 250

Query: 122 SDTD-DVDVRGKFLSNFSFDLNVGGG 138
           SD+D DVD+ G+FLS+  FDL+   G
Sbjct: 251 SDSDADVDIGGRFLSDTDFDLDFKTG 264

[Close]

BLAST of Lcy12g010550 vs. NCBI nr
Match: KAA0053756.1 (uncharacterized protein E6C27_scaffold135G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 8.3e-11
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 2   VEVLNF--------SVGEFLGKVLESEAVDEGIADCSA-DGREEFFGKILEFDAVKEEQI 61
           VEVLN         +  EF GKVLE E V + I + SA +G EE  GK L+F+AV+EE+ 
Sbjct: 142 VEVLNSCSNHEILGNENEFSGKVLEHEIVGQEITEGSAVNGTEEVSGKFLKFEAVEEERP 201

Query: 62  TNSSGNEGEEFSGKVSESELIDEEDNIESSREGQTSGKQRKLKRRDEEDNDFLRETDFAG 121
                ++         E E+++   N +     +   ++ + +  +EEDNDFL+ETDFAG
Sbjct: 202 FTKFEDD---------EEEIMERFRNEKEESSWKIQSEEEEEEEEEEEDNDFLKETDFAG 261

Query: 122 SDTD-DVDVRGKFLSNFSFDLNVGGG 138
           SD+D DVD+ G+FLS+  FDL+   G
Sbjct: 262 SDSDADVDIGGRFLSDTDFDLDFKTG 278

[Close]

BLAST of Lcy12g010550 vs. NCBI nr
Match: TYK25646.1 (uncharacterized protein E5676_scaffold352G008090 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 8.3e-11
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 2   VEVLNF--------SVGEFLGKVLESEAVDEGIADCSA-DGREEFFGKILEFDAVKEEQI 61
           VEVLN         +  EF GKVLE E V + I + SA +G EE  GK L+F+AV+EE+ 
Sbjct: 142 VEVLNSCSNHEILGNENEFSGKVLEHEIVGQEITEGSAVNGTEEVSGKFLKFEAVEEERP 201

Query: 62  TNSSGNEGEEFSGKVSESELIDEEDNIESSREGQTSGKQRKLKRRDEEDNDFLRETDFAG 121
                ++         E E+++   N +     +   ++ + +  +EEDNDFL+ETDFAG
Sbjct: 202 FTKFEDD---------EEEIMERFRNEKEESSWKIQSEEEEEEEEEEEDNDFLKETDFAG 261

Query: 122 SDTD-DVDVRGKFLSNFSFDLNVGGG 138
           SD+D DVD+ G+FLS+  FDL+   G
Sbjct: 262 SDSDADVDIGGRFLSDTDFDLDFKTG 278

The following BLAST results are available for this feature:

BLAST of Lcy12g010550 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g010550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHR8	4.7e-12	40.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G826700 PE=4 SV=1	[more]
A0A5D3DPP5	4.0e-11	39.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UHN5	4.0e-11	39.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1F8X7	4.9e-09	42.42	uncharacterized protein LOC111441903 OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]
A0A6J1BVT2	5.4e-08	41.55	uncharacterized protein LOC111005168 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of Lcy12g010550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905369.1	2.7e-17	48.91	uncharacterized protein LOC120091420 [Benincasa hispida]	[more]
XP_031739052.1	9.8e-12	40.41	uncharacterized protein LOC101211770 isoform X2 [Cucumis sativus]	[more]
XP_011652238.1	9.8e-12	40.41	uncharacterized protein LOC101211770 isoform X1 [Cucumis sativus] >KGN59576.1 hy...	[more]
KAA0053756.1	8.3e-11	39.73	uncharacterized protein E6C27_scaffold135G001360 [Cucumis melo var. makuwa]	[more]
TYK25646.1	8.3e-11	39.73	uncharacterized protein E5676_scaffold352G008090 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy12g010550 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g010550.1	Lcy12g010550.1	mRNA