Lcy12g009950 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g009950
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr12: 36955855 .. 36960627 (-)
RNA-Seq ExpressionLcy12g009950
SyntenyLcy12g009950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGCCAAACAGAGCTGGAGATTAATACGATATCCTAATAGCCTTCTAGCCAAGGTGCTTCGCGGGAGATATTTTAAAACTGGGCATTTTCTTAAAGCTCAGTTAGGAAGCAATCCTTCTTACACATGGAGGAGTATTCTTTGGGGTCGTGAACTTTTTGAGAAAGGCTATCGTTGGCGTGTGGGAAACGGTCTATCCATTGACGCTACAAGTGATCCTTGGATTCCTAAGGAGGGATCGTGCAAACCAACTTTGACCCACCCGAGTATACATCACTACTCAGTAGCTCAGCTTATGGATAATAATGGCAGCTGGAATGAATCTTTGATTCGTGGAGCTTTCATGGTGGATGAGGCCGAGAGAATCCTTAATATCCCATTGAACCCATTGATGAGAGATGATGAGATTATTTGGCATCTTGATTCTAAAGGACAGTTCTCTGTTAAGAGCGCTTATAGATTGGGCAAATTTCTAAGCGACGCCGGTGAAGCATCATCATCTAGCTACAATAACCAGGAGTACTTTTGGAAAACATATTGGAGAACAAAAATTCCTCCCAAAATCAAACATTTTGGATGGAAACTTTATAATAATGCTTTGCCTACTCTAATGAATCTCATTAATCGTGGCTTGGATACTAATATGATGTGTTTACTGTGTAGGGAAAATGAGGAATCTACGAAACATCTATTTTGGGGATGCAAACACTCGAGGAGAATTTGGAATAATTATTTGCTTGATTCTGACTTAATTTGGTTATTTGGCAGGAATGGATGGTCTACCCAAGATGTATGTGAGCGATTATGGAAGGGAAGCAGGGAGCTAGGGATGGATGAACGGCGAATGAAAACGAGCTTAGTGGTTTGTTGGCAACTATGGAATTACAGAAATGCAATTAAACATGGAAAGCAGCAGCCCAACCTATTTGTGCTGAAAAAGCAAATTGACTCATACCTTGAGGAGCTCGACGGTCAAAATCAAAATTCCAAAAGAGAGCCCAGACGATATCTAAGTTCAGAGGCTACCACAGAAGACCCATCTCCGGCGAACTGGTTATCACCCCCGGCAAACGATTGGAAGTTGAATTGCGACGCTGCTTGGTGTGAGAAACGAAATCAGGGCGGCATTGGATGGATTTTGAGGAGAGGAAACGGCACTCTAGTAGCTGCCGGCTTCAGGTGCATTCATCAGCGATGGAAGGTTCTCTGGTTGGAAGCTCTTGCAATCATCGAAGGCCTTCGTCACATCCCGTCAGCGTCGGTTGGCATCCACGTGGAAACAGATGCGCTCCAAGTAGTTAATCTCATGGAGGATAAAGATGGGGATATTACAGAGACTTTGGTTTTCATTAAGGAAGTTCAAGCCCTAATGGGAGAATTGAATATTGCTTCTTTCAAACATGTGAAAAGAGTCCACAATGGCATGGCCCACCGCCTGGCTAACATAGCTTGTCAAACTGGAACTTCTTATTTTTGGAATGATTTTTTTCCTATTTGGTTGTTGGATTTAAATGATGTGGACATTGGGTTTGAAATTCAAACTAATAGGGGTTCTGTCCTATAGTTGATATCCCAATGGAAAGTTTATCTTTAGTTTAATGTAATTTTCTTCTCAAAAAAAAAAAAAAAAAAAAAAACTTTCAATTTTATTTCTAATAAGTCTCCAAACTATAAAAATGTATAACAGATCATTAAATTTTCAAGTTTATTTAATAGGTCCTTGATATATTCTTTTTTTTTTTTTTTTGTTAAATTAACAAATCTATTAGATATAAAATTGAATTTCATGTTTAATAAGACCCTAAACTTTCAACTTTATGTCAGTAGATCCGTGAATTTTAAAAAACTTTGAATAGGTCAATGACTTATTAGCCACAAAAAAAAAATGAAAATTAGGGACCTATTAGACACAAAATTGAAAATTTAAGGACCTATTAGATATTTTTTAAAGTTTAGGGACTAAATAGATACAAAACTAAAAGTTTAGGAACCTATTAGATATTTTTTAAAGTTCGCAGACTAAACAGACACAAACCTAACTTTAGGAATTGAACTTTTAATTTATCCTAGTGTGTAATAGGGAGACCTCACATATATATATACAACTAGGAGTGCAAGCAAAAACCGGAAAACCGACAAACCGAACCGAACCAAACCGATCCAATGGTTTGGTTCGGTTATTTTGAAAAAATATGGACATCTCGGTTTCGTTTTTGGGAAAACCGAAAATTGTCGGTTCGGTTCGGTTTTTCATTCAAAAAACCAATAAAAAACCGAACCGAACCGACTATATATATACCACTTAAAAAAAACCCTAACCTTTTGCATCTTGCCTCTCTCCACATCTCACTTTTTTCCTAAATTGGCTAGAAATCTCTTTTTTCTATGTAATTTAAAGTATAAATTATGATATTATTTGTATGTTTATCTTTATTGTGTATATTTATTTAAAATCAAATATTTAAAAATTGTTATTTACGGATTAGTTTGAGAAAATTAAGTAATTGTATTGAATAAATTAATTAATTGAAGTTTGTATTGAAAAAATGGGTACAATGGGTCATTGGGCCAAAAATTAAAACAAAAAAAAAAACAAATGGGTTGAAATTAGAAGAGAAAATGAGTCATTTAAAAAAATAAAAATAAAAAAGCCCACATTGGGCCCAAAACCGAAAACCGATCCATTGGACAAACCGAACCGAAAGAAAACCGAACCATTGGACATGTCCTATATTGGACATTGGTTCGGTTCAGAGTTTTGTAAAACCGATTGGATCGGTTCGGTTCGCGGTTTGGTCAAAAACCGACAAAACCGAACCGAGTATCACCCCTATATACAACCCTAGCCATTGAGAAGGTAAAAGGTAAATGTTGGTTGTTGGTAGTTTTTTTTTTTTTTTTTTTTTTTTGACAACATATGGAGTGGGGGATTTGAACATTGGTAGCCTTTCTCAGCAGTAAAAGGGACTTTTTCATAATATTTTCCCTCCTCCTGATCGATTGAGGCATCTCTAAGCTACTTGTCTGAGGTGCAAGAAATAAAGTTTGAAAACCATTGGTCAAGCCTTCTAAATTTGTGAAAGTATTAATTAAGGAGATGAAATAATTGTAGGCAGAAGTTGGACTCAAGGGAGTAAGATCACTAGCCTATGGTTTTAGAATATCGCCATTTGAAAAATTATTTGGTTATACGTCTAATTATTCTTCTTTGCGTGTATTTGGGAGCTCTACTTTCTTGTGTTCTTCGTCCTCATGTTGAACAAGATAAACTCTCCTCTTGGTCCACTATTTATTCCTCCTTGGGTATGACATAGAACAAAGGGGCAGTTGCATAGATGACAAATTGGACCAAATTAATAGCAAATATAGCACAGTTACAAACTAGTTGCAAATATAACAAAATTAATTGTACAAGACCAAAAAGTTGTTGTCAGATTCTATAAGTGTCTATCACTGATAAACTTTGATTATTCAAAGTATATCAGTGTCTATCGTTGATAAACTTTGATTAATCAAAGTCTATTAGTGACTATCACTGATAGACTTTGATTAATCAAAGTCTATCAATGATAGTCACTGATAGATTTTGATTAACCAGAGTTTATCAAACGATAGACACTGATAGACTCTGAATAATCGGAGTCTATCAGTAGATAGACTCTGAATAATCAGAGTTTATCAGTAGACTGATAGATTCTGATTAATTAGAGTCTATCGTTGATAAACTCTGATAATCGAAGTTTATCAGATAGATTCTAATTAACCAGAGTATTTGCAATTTTTTTACATTGTGCTATATTTGCTATTAATTTGGTCCAATTTTCCACCCACCGCAAATTCTCAAAGATTATATTTGAACGTGCTCAAATATATCTGATAATAAGGTTGTGAATACTTCTCTTGAGCTAATTAATGCTTGTTATTCTAGTTCAAATGGCACTCCTCTACCAAATAGTTTGTATCGAATTATTGTTAATAACCTAGTTTATCTCACTATTACTCGACCTGATATATATTTGCATATATTTTCCACATTGTAAGTTAGTTTGTTGCCTCTCAAATTACTGTTCATTGGGTTATATAATTCATCCGCAATTTAAGATATCTTTGTGATACTTAATTTCAATATCTTTTGCTCTTTCATCTACTTCTTCACTACAATTGCATGCCTACTCCGATGCTAATTGGGCAAATGTGCTAATAGCTTCTACCATCTATGAGAGATAGTTGAGTTTGGATGGTTTTGCTTGTTATATAGGTTGTTTCTCTTTATGAACCCATGCCATTGTACCGTGATAATTAAAGTGTAATTTAGATAACACATAACTAGGGGTGAGCACGGTTCAGTTCGGTCCGGTTTTGGACCAAACCAATGACCGAACTGAACTCTTCGGTTCTTAAAAGATCTAAACCGAGAGAAACCGAAAGTTTCATCAATTTCAGTTTAAAACTGAATCGATCATTTTCGGTTCTATGCAGTTCAATTCGGTTTTAAACCGATTTTTGTTTTTTCTTTTTTTTTTCTTTTTTCTAAGAAGTAAGAACATTAGCAACTTTTGTTTTTAAAAAAAAGTAAAATTCTTTACCCTGTGAAGATGCATACAGTGAGAGGAAGAAAGATAGTGGAGGCTATGGGGAAGGGCGGCGTCAACTCCGATCCAAACCTGAGGGAAGAAGCTTCGAGTGTGAGGTCGGCTTTGGTGACGATGACAATGGAGAAAAGCTGTCACAGCGGGGAAGGGCTTCAACGAAAAGGAAAATAGCTCAGTGA

mRNA sequence

ATGCTAGCCAAACAGAGCTGGAGATTAATACGATATCCTAATAGCCTTCTAGCCAAGCAAATTGACTCATACCTTGAGGAGCTCGACGGTCAAAATCAAAATTCCAAAAGAGAGCCCAGACGATATCTAAGTTCAGAGGCTACCACAGAAGACCCATCTCCGGCGAACTGGTTATCACCCCCGGCAAACGATTGGAAGTTGAATTGCGACGCTGCTTGGTGTGAGAAACGAAATCAGGGCGGCATTGGATGGATTTTGAGGAGAGGAAACGGCACTCTAGTAGCTGCCGGCTTCAGGTGCATTCATCAGCGATGGAAGGTTCTCTGGTTGGAAGCTCTTGCAATCATCGAAGGCCTTCGTCACATCCCGTCAGCGTCGGTTGGCATCCACGTGGAAACAGATGCGCTCCAAGTAGTTAATCTCATGGAGGATAAAGATGGGGATATTACAGAGACTTTGGTTTTCATTAAGGAAGTTCAAGCCCTAATGGGAGAATTGAATATTGCTTCTTTCAAACATGTGAAAAGAGTCCACAATGGCATGGCCCACCGCCTGGCTAACATAGCTTGTCAAACTGGAACTTCTTATTTTTGGAATGATTTTTTTCCTATTTGGTTGTTGGATTTAAATGATGTGGACATTGGTGAGAGGAAGAAAGATAGTGGAGGCTATGGGGAAGGGCGGCGTCAACTCCGATCCAAACCTGAGGGAAGAAGCTTCGAGTGTGAGGTCGGCTTTGGTGACGATGACAATGGAGAAAAGCTGTCACAGCGGGGAAGGGCTTCAACGAAAAGGAAAATAGCTCAGTGA

Coding sequence (CDS)

ATGCTAGCCAAACAGAGCTGGAGATTAATACGATATCCTAATAGCCTTCTAGCCAAGCAAATTGACTCATACCTTGAGGAGCTCGACGGTCAAAATCAAAATTCCAAAAGAGAGCCCAGACGATATCTAAGTTCAGAGGCTACCACAGAAGACCCATCTCCGGCGAACTGGTTATCACCCCCGGCAAACGATTGGAAGTTGAATTGCGACGCTGCTTGGTGTGAGAAACGAAATCAGGGCGGCATTGGATGGATTTTGAGGAGAGGAAACGGCACTCTAGTAGCTGCCGGCTTCAGGTGCATTCATCAGCGATGGAAGGTTCTCTGGTTGGAAGCTCTTGCAATCATCGAAGGCCTTCGTCACATCCCGTCAGCGTCGGTTGGCATCCACGTGGAAACAGATGCGCTCCAAGTAGTTAATCTCATGGAGGATAAAGATGGGGATATTACAGAGACTTTGGTTTTCATTAAGGAAGTTCAAGCCCTAATGGGAGAATTGAATATTGCTTCTTTCAAACATGTGAAAAGAGTCCACAATGGCATGGCCCACCGCCTGGCTAACATAGCTTGTCAAACTGGAACTTCTTATTTTTGGAATGATTTTTTTCCTATTTGGTTGTTGGATTTAAATGATGTGGACATTGGTGAGAGGAAGAAAGATAGTGGAGGCTATGGGGAAGGGCGGCGTCAACTCCGATCCAAACCTGAGGGAAGAAGCTTCGAGTGTGAGGTCGGCTTTGGTGACGATGACAATGGAGAAAAGCTGTCACAGCGGGGAAGGGCTTCAACGAAAAGGAAAATAGCTCAGTGA

Protein sequence

MLAKQSWRLIRYPNSLLAKQIDSYLEELDGQNQNSKREPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQGGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASVGIHVETDALQVVNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIACQTGTSYFWNDFFPIWLLDLNDVDIGERKKDSGGYGEGRRQLRSKPEGRSFECEVGFGDDDNGEKLSQRGRASTKRKIAQ
Homology
BLAST of Lcy12g009950 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 0

Query: 15  SLLAKQIDSYLEELDGQNQNSKREPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWC 74
           S + +Q+  ++ E   Q++ S     + L+++          W  PP + W LN DA+W 
Sbjct: 37  STMIQQLTKFVTESSYQSETSLSMLHKTLNNK--------LKWEPPPMHIWTLNADASWS 96

Query: 75  EKRNQGGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV--GIHVE 134
           +  ++GGIGWI+R  +G +V AG R +     V  LEA AI+EGLR++ +  V   +H+E
Sbjct: 97  DSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIE 156

Query: 135 TDALQVVNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIACQT 194
           TD+ +V +L+  K  D+T+T   ++E+  L     I +F  V R  NG AH LA  A   
Sbjct: 157 TDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVL 216

Query: 195 GTSYFWNDFFPIWL 207
             S  W D FP WL
Sbjct: 217 RESMIWVDCFPNWL 222

BLAST of Lcy12g009950 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 64/173 (36.99%), Postives = 95/173 (54.91%), Query Frame = 0

Query: 21  IDSYLEELDGQNQNSK-REPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQ 80
           ID Y+    G+N N K +   + L      ED + A W  P +N WKLN +AAW    N 
Sbjct: 42  IDRYIINSAGRNTNLKGKSTNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNT 101

Query: 81  GGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV-GIHVETDALQV 140
           GGIGWILR   G ++ A  R I     + +LE +AI EGLR I       IH+E+D+L+ 
Sbjct: 102 GGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEA 161

Query: 141 VNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIACQ 192
           ++L+  +  D TE +  ++E+  +M ++ I S +H+ R  N +AH LA  A +
Sbjct: 162 IHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRAME 214

BLAST of Lcy12g009950 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.1e-20
Identity = 63/181 (34.81%), Postives = 94/181 (51.93%), Query Frame = 0

Query: 21  IDSYLEELDGQNQNSK-REPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQ 80
           ID Y+    G++ N K +   + L       D + A W  P +N WKLN DAAW    N 
Sbjct: 42  IDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNT 101

Query: 81  GGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV---------GIH 140
           GGIGWILR   G ++ A  R I     + +LE +AI EGLR I               IH
Sbjct: 102 GGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIH 161

Query: 141 VETDALQVVNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIAC 192
           +E+D+L+ ++L+  +  D TE +  ++E+  +M ++ I S +H+ R  N +AH LA  A 
Sbjct: 162 LESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAM 221

BLAST of Lcy12g009950 vs. ExPASy TrEMBL
Match: A0A6J5UAY2 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20161 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.7e-16
Identity = 53/162 (32.72%), Postives = 90/162 (55.56%), Query Frame = 0

Query: 56   NWLSPPANDWKLNCDAAWCEKRNQGGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAI 115
            +W  PP    K+NCDAAW  +   GG+GW++R  +G +V AG +   +    L +EA AI
Sbjct: 1146 SWRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGDMRGGSALAMEAEAI 1205

Query: 116  IEGL-RHIPSASVGIHVETDALQVVNLMEDK-DGDI-TETLVFIKEVQALMGELNIASFK 175
             E L   + S    + VE+D+LQV+ ++  + + DI  +T+VF  +++ L+G+     F 
Sbjct: 1206 REALVACVQSGLSKLEVESDSLQVIRMIGGEWNMDIAVDTIVF--DIKQLVGQFQHCVFL 1265

Query: 176  HVKRVHNGMAHRLANIACQTGTSYFWNDFFPIWLLDLNDVDI 215
            +  R  N  AH++A    + G  + W+D +P W+ D+   D+
Sbjct: 1266 YTPRNCNKAAHKIAAFVSRVGGVHTWDDLWPEWIFDILVSDV 1305

BLAST of Lcy12g009950 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.7e-13
Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 0

Query: 21  IDSYLEELDGQNQNSKREPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQG 80
           ID Y+    GQ+ N KR+ + +        D + A W  P +N WKLN DAAW    N  
Sbjct: 220 IDRYIINSAGQDTNLKRKSKDF-HPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTD 279

Query: 81  GIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV-GIHVETDALQVV 140
           GIGWILR   G ++  G R I     + +LE +AI EGLR I       IH+E+D+L+ +
Sbjct: 280 GIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAI 339

Query: 141 NLM 143
           +L+
Sbjct: 340 HLL 341

BLAST of Lcy12g009950 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-22
Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 0

Query: 15  SLLAKQIDSYLEELDGQNQNSKREPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWC 74
           S + +Q+  ++ E   Q++ S     + L+++          W  PP + W LN DA+W 
Sbjct: 37  STMIQQLTKFVTESSYQSETSLSMLHKTLNNK--------LKWEPPPMHIWTLNADASWS 96

Query: 75  EKRNQGGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV--GIHVE 134
           +  ++GGIGWI+R  +G +V AG R +     V  LEA AI+EGLR++ +  V   +H+E
Sbjct: 97  DSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIE 156

Query: 135 TDALQVVNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIACQT 194
           TD+ +V +L+  K  D+T+T   ++E+  L     I +F  V R  NG AH LA  A   
Sbjct: 157 TDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVL 216

Query: 195 GTSYFWNDFFPIWL 207
             S  W D FP WL
Sbjct: 217 RESMIWVDCFPNWL 222

BLAST of Lcy12g009950 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-21
Identity = 64/173 (36.99%), Postives = 95/173 (54.91%), Query Frame = 0

Query: 21  IDSYLEELDGQNQNSK-REPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQ 80
           ID Y+    G+N N K +   + L      ED + A W  P +N WKLN +AAW    N 
Sbjct: 42  IDRYIINSAGRNTNLKGKSTNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNT 101

Query: 81  GGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV-GIHVETDALQV 140
           GGIGWILR   G ++ A  R I     + +LE +AI EGLR I       IH+E+D+L+ 
Sbjct: 102 GGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEA 161

Query: 141 VNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIACQ 192
           ++L+  +  D TE +  ++E+  +M ++ I S +H+ R  N +AH LA  A +
Sbjct: 162 IHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRAME 214

BLAST of Lcy12g009950 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-19
Identity = 63/181 (34.81%), Postives = 94/181 (51.93%), Query Frame = 0

Query: 21  IDSYLEELDGQNQNSK-REPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQ 80
           ID Y+    G++ N K +   + L       D + A W  P +N WKLN DAAW    N 
Sbjct: 42  IDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNT 101

Query: 81  GGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV---------GIH 140
           GGIGWILR   G ++ A  R I     + +LE +AI EGLR I               IH
Sbjct: 102 GGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIH 161

Query: 141 VETDALQVVNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIAC 192
           +E+D+L+ ++L+  +  D TE +  ++E+  +M ++ I S +H+ R  N +AH LA  A 
Sbjct: 162 LESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAM 221

BLAST of Lcy12g009950 vs. NCBI nr
Match: CAB4273082.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 95.1 bits (235), Expect = 9.6e-16
Identity = 53/162 (32.72%), Postives = 90/162 (55.56%), Query Frame = 0

Query: 56   NWLSPPANDWKLNCDAAWCEKRNQGGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAI 115
            +W  PP    K+NCDAAW  +   GG+GW++R  +G +V AG +   +    L +EA AI
Sbjct: 1146 SWRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGDMRGGSALAMEAEAI 1205

Query: 116  IEGL-RHIPSASVGIHVETDALQVVNLMEDK-DGDI-TETLVFIKEVQALMGELNIASFK 175
             E L   + S    + VE+D+LQV+ ++  + + DI  +T+VF  +++ L+G+     F 
Sbjct: 1206 REALVACVQSGLSKLEVESDSLQVIRMIGGEWNMDIAVDTIVF--DIKQLVGQFQHCVFL 1265

Query: 176  HVKRVHNGMAHRLANIACQTGTSYFWNDFFPIWLLDLNDVDI 215
            +  R  N  AH++A    + G  + W+D +P W+ D+   D+
Sbjct: 1266 YTPRNCNKAAHKIAAFVSRVGGVHTWDDLWPEWIFDILVSDV 1305

BLAST of Lcy12g009950 vs. NCBI nr
Match: XP_015382715.1 (uncharacterized protein LOC107175626 [Citrus sinensis])

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-14
Identity = 59/166 (35.54%), Postives = 81/166 (48.80%), Query Frame = 0

Query: 47  ATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQGGIGWILRRGNGTLVAAGFRCIHQRWK 106
           + T + S   W  PP N  KLN DAA   K  + G+G +LR  NG +VAAG + +  R  
Sbjct: 255 SNTREVSQQRWSPPPKNVLKLNVDAATNNKNQKVGLGAVLRDSNGRVVAAGIKQVSFRKD 314

Query: 107 VLWLEALAIIEGLRHI-PSASVGIHVETDALQVVNLMEDKDGDITETLVFIKEVQALMGE 166
           V + EA AI  GL+    +A+  + VETD   V  L+ +  G  +E    I E+Q    E
Sbjct: 315 VSYAEAEAIQWGLQIAKEAAATSLIVETDCKDVAELVNNTKGSRSEIFWIISEIQTQKRE 374

Query: 167 LNIASFKHVKRVHNGMAHRLANIACQTGTSYFWNDFFPIWLLDLND 212
                F  V R  N  AH LA  A +  T+  W D  PI + ++ D
Sbjct: 375 FQRIHFNFVPRFCNAHAHSLAKHALRKDTAAVWLDILPIEVQNVFD 420

BLAST of Lcy12g009950 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-05
Identity = 50/204 (24.51%), Postives = 77/204 (37.75%), Query Frame = 0

Query: 7   WRLIRYPNSLLAKQIDSYLEELDGQNQNSKREPRRYLSSEATTE--------DPSPANWL 66
           WR+ +  N L+     +  +       N  +E   +L +  T E        DPS     
Sbjct: 49  WRIWKSGNDLVFNHTRTKFQTTVEMALNDTKE---WLDNTMTNEQQNGNRNADPSRNTKW 108

Query: 67  SPPAND-WKLNCDAAWCEKRNQGGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIE 126
           SPP  D  K N DA+  E+    G+GWILR   GT++  G      R      E   +I 
Sbjct: 109 SPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIW 168

Query: 127 GLRHIPSASVG-----IHVETDALQVVNLMEDKDGDITETLVFIKEVQALMGELNIASFK 186
            ++    AS G     +  E D   +  ++  K  +      F+  +Q+ +       F 
Sbjct: 169 AIQ----ASYGFGHKKVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIPSFESIEFS 228

Query: 187 HVKRVHNGMAHRLANIACQTGTSY 197
              R  NG A  LA  A +  T +
Sbjct: 229 FKHREQNGCADFLAKQAIKENTQW 244

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNV91.5e-2235.05uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CP261.3e-2136.99uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DSV19.1e-2034.81uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J5UAY24.7e-1632.72Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=... [more]
A0A6J1DL643.7e-1339.02uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
XP_022155262.13.1e-2235.05uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143535.12.6e-2136.99uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022156777.11.9e-1934.81uncharacterized protein LOC111023608 [Momordica charantia][more]
CAB4273082.19.6e-1632.72unnamed protein product [Prunus armeniaca][more]
XP_015382715.12.4e-1435.54uncharacterized protein LOC107175626 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
AT5G65005.11.3e-0524.51Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 63..191
e-value: 9.3E-15
score: 56.8
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 68..188
e-value: 1.2E-18
score: 67.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..260
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 44..214
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 67..187
e-value: 9.18361E-18
score: 75.0432
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 63..192

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g009950.1Lcy12g009950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity