Lcy12g008800 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g008800
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	NAD(P)H dehydrogenase subunit M
Location	Chr12: 35094185 .. 35095571 (-)
RNA-Seq Expression	Lcy12g008800
Synteny	Lcy12g008800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGACACCAAAAAAAAAGTTCTTCCATGGCAGCAGCAGCTTCATCTTACATAGTCTTTTCAATGGTGGGTTGGAAAAATGGCAAACAAAACACAAGAACCACAGCCAGATTTCCCATCTCAGCTCAGCTCAATGAAGCTGCAGAGCAACTGAAAGTGGGAGAAGAAGAAGAGGCAAAGCCGAAACCGCCACCGTCACCGTCGCCACCGCCGCTGCGGCCAGTGGAAGCACAGCAGAATGTGAAGAGCAAGAACATGAGCAGAGAGTATGGAGGGCAATGGCTGAGCAGTGTGACTCGCCATGTAAGAATCTATGCAGCTTACATTGACCCTGTTACTTGTGAGTTTGATCAGACCCAAATGGATAAACTCACTCTCATTTTGGACCCAAGCAATGAGTTCCTTTGGAATCCTGAAACATGCAATAAAGTCTATGCTTACTTCCAAGAGCTTGTCGATCATTACGAGGTACTTTTGGCTTCGTTCGATAACCATTTAGTTTTTCACAGTGATTTTCATATTTCTTAGGGAAACATTTGAATTTTTACTCAAATTTCGAAAACAAAAACAAGTTTTTAAAAATTACTTTTTTTAGTTTTCAAAACAAGGAAAATCATGGATTGAGGAAGTATTTATAAACTCAATTTTCGTAAATAAAAAACCGAAAGGTTGTCAAACGAGACCATTTGTTTTTTTCTCTCTCTACTCTTTGATCATTACATTGACCCTGTAACTTGTGGGTTTGAGCTTAGTTTTGATTCATACTCGTAGAATGAAGAAAATGTGCGATAAACATCTTGAATTGCTAATTGCCTGATCTTTCTTTTATGCTCAGGAGAGAACTCGAAGATAGACTTGTTCATATAATCTCATGACGAGAAACGTCGTTTTATTTTTCTATTTTGTTAATGTGCTGTTATTCTAACCAACATTTTGAAAATGTTACTTGTGGAAAACAGGGAGCCCCATTGACAGAATATACACTTCGCCTAATTGGTTCAGACATAGAACACTACATTAGAAAGATGCTTTATGATGGTGAAATCAAGTACAATATGAATGCAAGAGTCCTCAACTTCAGCATGGGAAAGCCAAGAATTATGTTCAATAACAATGATCTGCCTCAGGATCTTCAATCATAGTAAATAGTTTAACAAATGCAAAAATATGTGACATATTTATTGTCTTGTGTTCCAAATAGAATAATAATTCTTCAATTTATACTTACATTTCCTTCCCTGTTTTGTAAACATAGTTTTACGTTAGTTTGTGATTGATTTTGGTCAAGTTTCGACCTAGTCACTATAGTTCGATTGAATTGTTTAAGACATCTCTAGATTGACCAAATGTTAATAAATTTAGGGGGAAAAAATCAATTTTTACTCTTAA

mRNA sequence

TAGACACCAAAAAAAAAGTTCTTCCATGGCAGCAGCAGCTTCATCTTACATAGTCTTTTCAATGGTGGGTTGGAAAAATGGCAAACAAAACACAAGAACCACAGCCAGATTTCCCATCTCAGCTCAGCTCAATGAAGCTGCAGAGCAACTGAAAGTGGGAGAAGAAGAAGAGGCAAAGCCGAAACCGCCACCGTCACCGTCGCCACCGCCGCTGCGGCCAGTGGAAGCACAGCAGAATGTGAAGAGCAAGAACATGAGCAGAGAGTATGGAGGGCAATGGCTGAGCAGTGTGACTCGCCATGTAAGAATCTATGCAGCTTACATTGACCCTGTTACTTGTGAGTTTGATCAGACCCAAATGGATAAACTCACTCTCATTTTGGACCCAAGCAATGAGTTCCTTTGGAATCCTGAAACATGCAATAAAGTCTATGCTTACTTCCAAGAGCTTGTCGATCATTACGAGGGAGCCCCATTGACAGAATATACACTTCGCCTAATTGGTTCAGACATAGAACACTACATTAGAAAGATGCTTTATGATGGTGAAATCAAGTACAATATGAATGCAAGAGTCCTCAACTTCAGCATGGGAAAGCCAAGAATTATGTTCAATAACAATGATCTGCCTCAGGATCTTCAATCATAGTAAATAGTTTAACAAATGCAAAAATATGTGACATATTTATTGTCTTGTGTTCCAAATAGAATAATAATTCTTCAATTTATACTTACATTTCCTTCCCTGTTTTGTAAACATAGTTTTACGTTAGTTTGTGATTGATTTTGGTCAAGTTTCGACCTAGTCACTATAGTTCGATTGAATTGTTTAAGACATCTCTAGATTGACCAAATGTTAATAAATTTAGGGGGAAAAAATCAATTTTTACTCTTAA

Coding sequence (CDS)

ATGGCAGCAGCAGCTTCATCTTACATAGTCTTTTCAATGGTGGGTTGGAAAAATGGCAAACAAAACACAAGAACCACAGCCAGATTTCCCATCTCAGCTCAGCTCAATGAAGCTGCAGAGCAACTGAAAGTGGGAGAAGAAGAAGAGGCAAAGCCGAAACCGCCACCGTCACCGTCGCCACCGCCGCTGCGGCCAGTGGAAGCACAGCAGAATGTGAAGAGCAAGAACATGAGCAGAGAGTATGGAGGGCAATGGCTGAGCAGTGTGACTCGCCATGTAAGAATCTATGCAGCTTACATTGACCCTGTTACTTGTGAGTTTGATCAGACCCAAATGGATAAACTCACTCTCATTTTGGACCCAAGCAATGAGTTCCTTTGGAATCCTGAAACATGCAATAAAGTCTATGCTTACTTCCAAGAGCTTGTCGATCATTACGAGGGAGCCCCATTGACAGAATATACACTTCGCCTAATTGGTTCAGACATAGAACACTACATTAGAAAGATGCTTTATGATGGTGAAATCAAGTACAATATGAATGCAAGAGTCCTCAACTTCAGCATGGGAAAGCCAAGAATTATGTTCAATAACAATGATCTGCCTCAGGATCTTCAATCATAG

Protein sequence

MAAAASSYIVFSMVGWKNGKQNTRTTARFPISAQLNEAAEQLKVGEEEEAKPKPPPSPSPPPLRPVEAQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARVLNFSMGKPRIMFNNNDLPQDLQS

Homology

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BLAST of Lcy12g008800 vs. ExPASy Swiss-Prot
Match: A7NVJ4 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhM PE=2 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.4e-78
Identity = 156/210 (74.29%), Postives = 169/210 (80.48%), Query Frame = 0


Query: 3   AAASSYIV---FSMVGWKNGKQNTRTTARFPISAQLN---EAAEQLKVGEEEEAKPKPPP 62
           AA SSY     FSM+GW  GK+  R    F ISAQ     E ++Q+   EEE+ K K   
Sbjct: 2   AATSSYTACTKFSMLGWIGGKRELRKRRAFFISAQQQAEVEESQQVNAQEEEQEKMKQQG 61

Query: 63  SPSPPPLRPVEAQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLT 122
               P  RPVE Q NVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLT
Sbjct: 62  KQKLP--RPVEPQVNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLT 121

Query: 123 LILDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEI 182
           LILDP+NEF+W  ETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRK+LYDGEI
Sbjct: 122 LILDPTNEFVWTSETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEI 181

Query: 183 KYNMNARVLNFSMGKPRIMFNNNDLPQDLQ 207
           KYNMNARVLNFSMGKPRI+FN+  LPQ++Q
Sbjct: 182 KYNMNARVLNFSMGKPRILFNDG-LPQNVQ 208

[Close]

BLAST of Lcy12g008800 vs. ExPASy Swiss-Prot
Match: A9PJQ8 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii OX=640484 GN=ndhM PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.1e-74
Identity = 145/207 (70.05%), Postives = 162/207 (78.26%), Query Frame = 0


Query: 3   AAASSYIV---FSMVGWKNGKQNTRTTARFPISAQLN-EAAEQLKVGEEEEAKPKPPPSP 62
           AA+SSY+    FSM+GW  G++  +      +S Q   E  E  +V  +EE K K P  P
Sbjct: 2   AASSSYMACAKFSMLGWLGGRRELKMRRVISVSPQEQAEVQESQEVNAQEEEKVKQPVQP 61

Query: 63  SPPPLRPVEAQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLI 122
                RPVE Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP TCEFDQTQ DKLTLI
Sbjct: 62  -----RPVEPQVNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPETCEFDQTQTDKLTLI 121

Query: 123 LDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKY 182
           LDP++EF+W  ETC KVY+YFQELVDHYEGAPLTEYTLRLIGSDIEHYIRK+LYDGEIKY
Sbjct: 122 LDPTDEFVWTDETCYKVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEIKY 181

Query: 183 NMNARVLNFSMGKPRIMFNNNDLPQDL 206
           NMNARVLNFSMGKPRI+FNN+   QD+
Sbjct: 182 NMNARVLNFSMGKPRILFNNDGQLQDV 203

[Close]

BLAST of Lcy12g008800 vs. ExPASy Swiss-Prot
Match: Q2V2S7 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhM PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.8e-63
Identity = 121/168 (72.02%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 37  EAAEQLKVGEEEEAKPKPPP---SPSPPPLRPVEAQQNVKSKNMSREYGGQWLSSVTRHV 96
           E    L+V E E  K +         P PLRPVE Q NVKSK M  ++GGQWLSSVTRHV
Sbjct: 39  EQDSTLEVQETETLKEEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQWLSSVTRHV 98

Query: 97  RIYAAYIDPVTCEFDQTQMDKLTLILDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTE 156
           RIYAAYIDP TCEFDQ+QMDKLTLILDP+ EF+W+ E+CNKVY+YFQELVDHYEGAPLTE
Sbjct: 99  RIYAAYIDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVDHYEGAPLTE 158

Query: 157 YTLRLIGSDIEHYIRKMLYDGEIKYNMNARVLNFSMGKPRIMFNNNDL 202
           YTLRLIGSD+EHYIRKML+DGEI+YNM+ARVLNFSMGKPR+ FN +++
Sbjct: 159 YTLRLIGSDVEHYIRKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNI 205

[Close]

BLAST of Lcy12g008800 vs. ExPASy Swiss-Prot
Match: A2XVZ1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=ndhM PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.6e-58
Identity = 116/191 (60.73%), Postives = 139/191 (72.77%), Query Frame = 0


Query: 24  RTTARFPISAQLNEAAEQLKVGEEEEAKPKPPPSPSPP------------PLRPVEAQQN 83
           R + RFP   +  +  +Q+K  EEE A    PP P               P +P+  Q  
Sbjct: 28  RRSVRFP-PVRAQDQQQQVKEEEEEAAVENLPPPPQEEEQRRERKTRRQGPAQPLPVQPL 87

Query: 84  VKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSNEFLWNPET 143
            +SKNMSREYGGQWLS  TRH+RIYAAYI+P T  FDQTQMDKLTL+LDP++EF+W  ET
Sbjct: 88  AESKNMSREYGGQWLSCTTRHIRIYAAYINPETNAFDQTQMDKLTLLLDPTDEFVWTDET 147

Query: 144 CNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARVLNFSMGK 203
           C KVY  FQ+LVDHYEGA L+EYTLRLIGSD+EH+IRK+LYDGEIKYNM +RVLNFSMGK
Sbjct: 148 CQKVYDEFQDLVDHYEGAELSEYTLRLIGSDLEHFIRKLLYDGEIKYNMMSRVLNFSMGK 207

[Close]

BLAST of Lcy12g008800 vs. ExPASy Swiss-Prot
Match: Q7FB12 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ndhM PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.6e-58
Identity = 116/191 (60.73%), Postives = 139/191 (72.77%), Query Frame = 0


Query: 24  RTTARFPISAQLNEAAEQLKVGEEEEAKPKPPPSPSPP------------PLRPVEAQQN 83
           R + RFP   +  +  +Q+K  EEE A    PP P               P +P+  Q  
Sbjct: 28  RRSVRFP-PVRAQDQQQQVKEEEEEAAVENLPPPPQEEEQRRERKTRRQGPAQPLPVQPL 87

Query: 84  VKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSNEFLWNPET 143
            +SKNMSREYGGQWLS  TRH+RIYAAYI+P T  FDQTQMDKLTL+LDP++EF+W  ET
Sbjct: 88  AESKNMSREYGGQWLSCTTRHIRIYAAYINPETNAFDQTQMDKLTLLLDPTDEFVWTDET 147

Query: 144 CNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARVLNFSMGK 203
           C KVY  FQ+LVDHYEGA L+EYTLRLIGSD+EH+IRK+LYDGEIKYNM +RVLNFSMGK
Sbjct: 148 CQKVYDEFQDLVDHYEGAELSEYTLRLIGSDLEHFIRKLLYDGEIKYNMMSRVLNFSMGK 207

[Close]

BLAST of Lcy12g008800 vs. ExPASy TrEMBL
Match: A0A6J1FIZ9 (NAD(P)H dehydrogenase subunit M OS=Cucurbita moschata OX=3662 GN=LOC111446160 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 7.1e-105
Identity = 195/208 (93.75%), Postives = 199/208 (95.67%), Query Frame = 0


Query: 1   MAAAASSYIVFSMVGWKNGKQNTRTTARFPISAQLNEAAEQLKVG-EEEEAKPKPPPSPS 60
           MA AASSY+VFSMVGWKNGKQNTR +ARFPISAQ+NEAAEQLKVG EEEEAKPKPPPS  
Sbjct: 1   MATAASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVGEEEEEAKPKPPPS-- 60

Query: 61  PPPLRPVEAQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL 120
             PLRPVE Q NVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL
Sbjct: 61  --PLRPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL 120

Query: 121 DPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYN 180
           DPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYN
Sbjct: 121 DPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYN 180

Query: 181 MNARVLNFSMGKPRIMFNNNDLPQDLQS 208
           MNARVLNFSMGKPRIMFN+NDLPQDLQS
Sbjct: 181 MNARVLNFSMGKPRIMFNSNDLPQDLQS 204

[Close]

BLAST of Lcy12g008800 vs. ExPASy TrEMBL
Match: A0A6J1IX15 (NAD(P)H dehydrogenase subunit M OS=Cucurbita maxima OX=3661 GN=LOC111480680 PE=3 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 9.2e-105
Identity = 193/207 (93.24%), Postives = 198/207 (95.65%), Query Frame = 0


Query: 1   MAAAASSYIVFSMVGWKNGKQNTRTTARFPISAQLNEAAEQLKVGEEEEAKPKPPPSPSP 60
           M+ AASSY+VFSMVGWKNGKQNTR +ARFPISAQ+NEAAEQLKVGEEEEAKPKPP S   
Sbjct: 1   MSTAASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVGEEEEAKPKPPLS--- 60

Query: 61  PPLRPVEAQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 120
            PLRPVE Q NVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD
Sbjct: 61  -PLRPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 120

Query: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNNNDLPQDLQS 208
           NARVLNFSMGKPRIMFN+NDLPQDLQS
Sbjct: 181 NARVLNFSMGKPRIMFNSNDLPQDLQS 203

[Close]

BLAST of Lcy12g008800 vs. ExPASy TrEMBL
Match: A0A5D3D3P2 (NAD(P)H dehydrogenase subunit M OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002070 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.2e-100
Identity = 188/207 (90.82%), Postives = 194/207 (93.72%), Query Frame = 0


Query: 2   AAAASSYIVFSMVGWKNGKQNTRTTARFPISAQLNEAAEQLKVGEEEEAKPKPPPSPSPP 61
           AAAASSYI+FSMVGWKNGKQNT+ T RFPISAQLNEAAEQLKVG++EE + +  P PS  
Sbjct: 4   AAAASSYIMFSMVGWKNGKQNTKHTLRFPISAQLNEAAEQLKVGDQEEDQEQATPKPS-- 63

Query: 62  PLRPVEAQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 121
           PLRPVE QQNVKSKNM REYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP
Sbjct: 64  PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 123

Query: 122 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 181
           SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN
Sbjct: 124 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 183

Query: 182 ARVLNFSMGKPRIMFNNNDLPQ-DLQS 208
           ARVLNFSMGKPRIMFN NDLPQ DLQS
Sbjct: 184 ARVLNFSMGKPRIMFNANDLPQDDLQS 208

[Close]

BLAST of Lcy12g008800 vs. ExPASy TrEMBL
Match: A0A1S3BGV5 (NAD(P)H dehydrogenase subunit M OS=Cucumis melo OX=3656 GN=LOC103489705 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.2e-100
Identity = 188/207 (90.82%), Postives = 194/207 (93.72%), Query Frame = 0


Query: 2   AAAASSYIVFSMVGWKNGKQNTRTTARFPISAQLNEAAEQLKVGEEEEAKPKPPPSPSPP 61
           AAAASSYI+FSMVGWKNGKQNT+ T RFPISAQLNEAAEQLKVG++EE + +  P PS  
Sbjct: 4   AAAASSYIMFSMVGWKNGKQNTKHTLRFPISAQLNEAAEQLKVGDQEEDQEQATPKPS-- 63

Query: 62  PLRPVEAQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 121
           PLRPVE QQNVKSKNM REYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP
Sbjct: 64  PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 123

Query: 122 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 181
           SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN
Sbjct: 124 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 183

Query: 182 ARVLNFSMGKPRIMFNNNDLPQ-DLQS 208
           ARVLNFSMGKPRIMFN NDLPQ DLQS
Sbjct: 184 ARVLNFSMGKPRIMFNANDLPQDDLQS 208

[Close]

BLAST of Lcy12g008800 vs. ExPASy TrEMBL
Match: A0A0A0K5H1 (NAD(P)H dehydrogenase subunit M OS=Cucumis sativus OX=3659 GN=Csa_7G221360 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 4.9e-98
Identity = 183/207 (88.41%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 2   AAAASSYIVFSMVGWKNGKQNTRTTARFPISAQLNEAAEQLKVGEEEEAKPKPPPSPSPP 61
           AAAASSYI+FSMVGWKNG QNT+ T RFPISAQ+NEAAEQLK G++EE + +  P PS  
Sbjct: 4   AAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKPS-- 63

Query: 62  PLRPVEAQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 121
           PLRPVE QQNVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL+LDP
Sbjct: 64  PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLDP 123

Query: 122 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 181
           SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN
Sbjct: 124 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 183

Query: 182 ARVLNFSMGKPRIMFNNNDLPQ-DLQS 208
           ARVLNFSMGKPRIMFN NDLPQ DLQS
Sbjct: 184 ARVLNFSMGKPRIMFNANDLPQDDLQS 208

[Close]

BLAST of Lcy12g008800 vs. NCBI nr
Match: XP_022940621.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita moschata] >XP_023523685.1 NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6607714.1 NAD(P)H-quinone oxidoreductase subunit M, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 389.8 bits (1000), Expect = 1.5e-104
Identity = 195/208 (93.75%), Postives = 199/208 (95.67%), Query Frame = 0


Query: 1   MAAAASSYIVFSMVGWKNGKQNTRTTARFPISAQLNEAAEQLKVG-EEEEAKPKPPPSPS 60
           MA AASSY+VFSMVGWKNGKQNTR +ARFPISAQ+NEAAEQLKVG EEEEAKPKPPPS  
Sbjct: 1   MATAASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVGEEEEEAKPKPPPS-- 60

Query: 61  PPPLRPVEAQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL 120
             PLRPVE Q NVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL
Sbjct: 61  --PLRPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL 120

Query: 121 DPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYN 180
           DPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYN
Sbjct: 121 DPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYN 180

Query: 181 MNARVLNFSMGKPRIMFNNNDLPQDLQS 208
           MNARVLNFSMGKPRIMFN+NDLPQDLQS
Sbjct: 181 MNARVLNFSMGKPRIMFNSNDLPQDLQS 204

[Close]

BLAST of Lcy12g008800 vs. NCBI nr
Match: XP_022981611.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita maxima])

HSP 1 Score: 389.4 bits (999), Expect = 1.9e-104
Identity = 193/207 (93.24%), Postives = 198/207 (95.65%), Query Frame = 0


Query: 1   MAAAASSYIVFSMVGWKNGKQNTRTTARFPISAQLNEAAEQLKVGEEEEAKPKPPPSPSP 60
           M+ AASSY+VFSMVGWKNGKQNTR +ARFPISAQ+NEAAEQLKVGEEEEAKPKPP S   
Sbjct: 1   MSTAASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVGEEEEAKPKPPLS--- 60

Query: 61  PPLRPVEAQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 120
            PLRPVE Q NVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD
Sbjct: 61  -PLRPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 120

Query: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNNNDLPQDLQS 208
           NARVLNFSMGKPRIMFN+NDLPQDLQS
Sbjct: 181 NARVLNFSMGKPRIMFNSNDLPQDLQS 203

[Close]

BLAST of Lcy12g008800 vs. NCBI nr
Match: KAG7037286.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 384.0 bits (985), Expect = 8.0e-103
Identity = 194/208 (93.27%), Postives = 197/208 (94.71%), Query Frame = 0


Query: 1   MAAAASSYIVFSMVGWKNGKQNTRTTARFPISAQLNEAAEQLKVG-EEEEAKPKPPPSPS 60
           MA AASSY+VFSMVGWKNGKQNTR +ARFPISAQ NEAAEQLKVG EEEEAKPKPP S  
Sbjct: 1   MATAASSYMVFSMVGWKNGKQNTRPSARFPISAQNNEAAEQLKVGEEEEEAKPKPPRS-- 60

Query: 61  PPPLRPVEAQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL 120
             PLRPVE Q NVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL
Sbjct: 61  --PLRPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL 120

Query: 121 DPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYN 180
           DPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYN
Sbjct: 121 DPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYN 180

Query: 181 MNARVLNFSMGKPRIMFNNNDLPQDLQS 208
           MNARVLNFSMGKPRIMFN+NDLPQDLQS
Sbjct: 181 MNARVLNFSMGKPRIMFNSNDLPQDLQS 204

[Close]

BLAST of Lcy12g008800 vs. NCBI nr
Match: XP_008447195.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis melo] >KAA0041980.1 NAD(P)H-quinone oxidoreductase subunit M [Cucumis melo var. makuwa] >TYK17916.1 NAD(P)H-quinone oxidoreductase subunit M [Cucumis melo var. makuwa])

HSP 1 Score: 373.6 bits (958), Expect = 1.1e-99
Identity = 188/207 (90.82%), Postives = 194/207 (93.72%), Query Frame = 0


Query: 2   AAAASSYIVFSMVGWKNGKQNTRTTARFPISAQLNEAAEQLKVGEEEEAKPKPPPSPSPP 61
           AAAASSYI+FSMVGWKNGKQNT+ T RFPISAQLNEAAEQLKVG++EE + +  P PS  
Sbjct: 4   AAAASSYIMFSMVGWKNGKQNTKHTLRFPISAQLNEAAEQLKVGDQEEDQEQATPKPS-- 63

Query: 62  PLRPVEAQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 121
           PLRPVE QQNVKSKNM REYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP
Sbjct: 64  PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 123

Query: 122 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 181
           SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN
Sbjct: 124 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 183

Query: 182 ARVLNFSMGKPRIMFNNNDLPQ-DLQS 208
           ARVLNFSMGKPRIMFN NDLPQ DLQS
Sbjct: 184 ARVLNFSMGKPRIMFNANDLPQDDLQS 208

[Close]

BLAST of Lcy12g008800 vs. NCBI nr
Match: XP_004139803.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis sativus] >KGN44204.1 hypothetical protein Csa_016125 [Cucumis sativus])

HSP 1 Score: 367.1 bits (941), Expect = 1.0e-97
Identity = 183/207 (88.41%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 2   AAAASSYIVFSMVGWKNGKQNTRTTARFPISAQLNEAAEQLKVGEEEEAKPKPPPSPSPP 61
           AAAASSYI+FSMVGWKNG QNT+ T RFPISAQ+NEAAEQLK G++EE + +  P PS  
Sbjct: 4   AAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKPS-- 63

Query: 62  PLRPVEAQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 121
           PLRPVE QQNVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL+LDP
Sbjct: 64  PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLDP 123

Query: 122 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 181
           SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN
Sbjct: 124 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 183

Query: 182 ARVLNFSMGKPRIMFNNNDLPQ-DLQS 208
           ARVLNFSMGKPRIMFN NDLPQ DLQS
Sbjct: 184 ARVLNFSMGKPRIMFNANDLPQDDLQS 208

[Close]

BLAST of Lcy12g008800 vs. TAIR 10
Match: AT4G37925.1 (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex )

HSP 1 Score: 242.7 bits (618), Expect = 2.7e-64
Identity = 121/168 (72.02%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 37  EAAEQLKVGEEEEAKPKPPP---SPSPPPLRPVEAQQNVKSKNMSREYGGQWLSSVTRHV 96
           E    L+V E E  K +         P PLRPVE Q NVKSK M  ++GGQWLSSVTRHV
Sbjct: 39  EQDSTLEVQETETLKEEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQWLSSVTRHV 98

Query: 97  RIYAAYIDPVTCEFDQTQMDKLTLILDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTE 156
           RIYAAYIDP TCEFDQ+QMDKLTLILDP+ EF+W+ E+CNKVY+YFQELVDHYEGAPLTE
Sbjct: 99  RIYAAYIDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVDHYEGAPLTE 158

Query: 157 YTLRLIGSDIEHYIRKMLYDGEIKYNMNARVLNFSMGKPRIMFNNNDL 202
           YTLRLIGSD+EHYIRKML+DGEI+YNM+ARVLNFSMGKPR+ FN +++
Sbjct: 159 YTLRLIGSDVEHYIRKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNI 205

The following BLAST results are available for this feature:

BLAST of Lcy12g008800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7NVJ4	1.4e-78	74.29	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Vitis vinifera OX=297...	[more]
A9PJQ8	2.1e-74	70.05	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii OX=640...	[more]
Q2V2S7	3.8e-63	72.02	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Arabidopsis thaliana ...	[more]
A2XVZ1	1.6e-58	60.73	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. i...	[more]
Q7FB12	1.6e-58	60.73	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. j...	[more]

BLAST of Lcy12g008800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIZ9	7.1e-105	93.75	NAD(P)H dehydrogenase subunit M OS=Cucurbita moschata OX=3662 GN=LOC111446160 PE...	[more]
A0A6J1IX15	9.2e-105	93.24	NAD(P)H dehydrogenase subunit M OS=Cucurbita maxima OX=3661 GN=LOC111480680 PE=3...	[more]
A0A5D3D3P2	5.2e-100	90.82	NAD(P)H dehydrogenase subunit M OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BGV5	5.2e-100	90.82	NAD(P)H dehydrogenase subunit M OS=Cucumis melo OX=3656 GN=LOC103489705 PE=3 SV=...	[more]
A0A0A0K5H1	4.9e-98	88.41	NAD(P)H dehydrogenase subunit M OS=Cucumis sativus OX=3659 GN=Csa_7G221360 PE=3 ...	[more]

BLAST of Lcy12g008800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940621.1	1.5e-104	93.75	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita moschata] >XP...	[more]
XP_022981611.1	1.9e-104	93.24	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita maxima]	[more]
KAG7037286.1	8.0e-103	93.27	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic, partial [Cucurbita argy...	[more]
XP_008447195.1	1.1e-99	90.82	PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis melo...	[more]
XP_004139803.1	1.0e-97	88.41	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis sativus] >KGN44...	[more]

BLAST of Lcy12g008800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37925.1	2.7e-64	72.02	subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018922	NAD(P)H-quinone oxidoreductase subunit M	PFAM	PF10664	NdhM	coord: 86..194 e-value: 1.1E-45 score: 154.3
IPR018922	NAD(P)H-quinone oxidoreductase subunit M	PANTHER	PTHR36900	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT M, CHLOROPLASTIC	coord: 2..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g008800.1	Lcy12g008800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding