Lcy12g007440 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g007440
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Eukaryotic rRNA processing
Location	Chr12: 31465409 .. 31465729 (-)
RNA-Seq Expression	Lcy12g007440
Synteny	Lcy12g007440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTATCAGATAAAGATGCTAGATTCTTAAATGAGGACACAATGGAAGATGATGATCTTGGTAGCGAGGATTCGGATTTTGGATCTGAATCTGCATCTGAATCTGAATCTGAGGAGGAAGAGGATGTAAAATTATATGAACCATCAAAGAATGCAATATATAATGTTGATGGTCTCCTTGATAAGCTTGGAGATATTAGCTGGCCCGAAAACGTGGAATGGATACACAAGCTAACTCTTGATATTGATCAAGAAAAAGAGGTGGATGTGAATGATGATCTAGCTAGAGAGCTTGCATTCTATACACAGGCTTTGTAG

mRNA sequence

ATGGGTGTATCAGATAAAGATGCTAGATTCTTAAATGAGGACACAATGGAAGATGATGATCTTGGTAGCGAGGATTCGGATTTTGGATCTGAATCTGCATCTGAATCTGAATCTGAGGAGGAAGAGGATGTAAAATTATATGAACCATCAAAGAATGCAATATATAATGTTGATGGTCTCCTTGATAAGCTTGGAGATATTAGCTGGCCCGAAAACGTGGAATGGATACACAAGCTAACTCTTGATATTGATCAAGAAAAAGAGGTGGATGTGAATGATGATCTAGCTAGAGAGCTTGCATTCTATACACAGGCTTTGTAG

Coding sequence (CDS)

ATGGGTGTATCAGATAAAGATGCTAGATTCTTAAATGAGGACACAATGGAAGATGATGATCTTGGTAGCGAGGATTCGGATTTTGGATCTGAATCTGCATCTGAATCTGAATCTGAGGAGGAAGAGGATGTAAAATTATATGAACCATCAAAGAATGCAATATATAATGTTGATGGTCTCCTTGATAAGCTTGGAGATATTAGCTGGCCCGAAAACGTGGAATGGATACACAAGCTAACTCTTGATATTGATCAAGAAAAAGAGGTGGATGTGAATGATGATCTAGCTAGAGAGCTTGCATTCTATACACAGGCTTTGTAG

Protein sequence

MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLYEPSKNAIYNVDGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL

Homology

[Close]

BLAST of Lcy12g007440 vs. ExPASy Swiss-Prot
Match: Q9LUJ5 (Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana OX=3702 GN=EBP2 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-23
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 11  LNEDTMEDDDLGSED----SDFGSESASESESEEEEDVKLYEPSKNAIYNVDGLLDKLGD 70
           L ED + DD++   D    +D  +ES S+S++E E   KL EP+K AIYN DGLLDKL D
Sbjct: 3   LEEDIVSDDEMNMIDEDDATDSEAESLSDSDTENEITEKLAEPTKTAIYNRDGLLDKLQD 62

Query: 71  ISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL 107
           ISWPE+V+W HKLT++IDQ   VDVNDDLARE AFYTQAL
Sbjct: 63  ISWPEDVDWTHKLTVEIDQGGAVDVNDDLARETAFYTQAL 102

[Close]

BLAST of Lcy12g007440 vs. ExPASy TrEMBL
Match: A0A6J1EEP4 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111433474 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.4e-42
Identity = 96/111 (86.49%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-----EEEEDVKLYEPSKNAIY 60
           MGVSDKDARFLNEDTMEDDDLG+EDSDFGSES SESES     EEEE+VKL EPSK AIY
Sbjct: 1   MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIY 60

Query: 61  NVDGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL 107
           N DGLLDKL DISWP+NVEWIH+L LDIDQEKEVDVNDDLARELAFYTQAL
Sbjct: 61  NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQAL 111

[Close]

BLAST of Lcy12g007440 vs. ExPASy TrEMBL
Match: A0A6J1H264 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111459763 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.8e-41
Identity = 95/106 (89.62%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLYEPSKNAIYNVDGL 60
           MGVSD+   FLNEDTMEDDDL SEDSDFGSE  SESESEEEEDVKL EPSKNAIYN DGL
Sbjct: 1   MGVSDEKDSFLNEDTMEDDDLDSEDSDFGSE--SESESEEEEDVKLSEPSKNAIYNADGL 60

Query: 61  LDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL 107
           LDKLGDISWPENV WIHKL+LDIDQEKEVDVNDDLARELAFYTQAL
Sbjct: 61  LDKLGDISWPENVGWIHKLSLDIDQEKEVDVNDDLARELAFYTQAL 104

[Close]

BLAST of Lcy12g007440 vs. ExPASy TrEMBL
Match: A0A5D3DB33 (Putative rRNA-processing protein EBP2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001370 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.4e-40
Identity = 94/107 (87.85%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLYEPSKNAIYNVDG 60
           MGVS KDA FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+L EPSKNAIYN DG
Sbjct: 10  MGVSIKDAEFLNEDTVEDDDLSSEDSEFESESESGSESEEEEEDVELSEPSKNAIYNADG 69

Query: 61  LLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL 107
           LLDKLGDISWPENVEWIHKLT DIDQEKEVDVNDDLARELAFYTQAL
Sbjct: 70  LLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQAL 116

[Close]

BLAST of Lcy12g007440 vs. ExPASy TrEMBL
Match: A0A1S3CT69 (probable rRNA-processing protein EBP2 homolog OS=Cucumis melo OX=3656 GN=LOC103504670 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40
Identity = 94/107 (87.85%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLYEPSKNAIYNVDG 60
           MGVS KDA FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+L EPSKNAIYN DG
Sbjct: 1   MGVSIKDADFLNEDTVEDDDLSSEDSEFESESESGSESEEEEEDVELSEPSKNAIYNADG 60

Query: 61  LLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL 107
           LLDKLGDISWPENVEWIHKLT DIDQEKEVDVNDDLARELAFYTQAL
Sbjct: 61  LLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQAL 107

[Close]

BLAST of Lcy12g007440 vs. ExPASy TrEMBL
Match: A0A6J1K7Q8 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490936 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.1e-40
Identity = 92/106 (86.79%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLYEPSKNAIYNVDGL 60
           MGVSD+   F+NEDTMEDDDL SEDSDFG    SESESEEEEDVKL EPSKNAIYN DGL
Sbjct: 1   MGVSDEKDSFVNEDTMEDDDLDSEDSDFG----SESESEEEEDVKLSEPSKNAIYNADGL 60

Query: 61  LDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL 107
           LDKLGDISWPENV WIHKL+LDIDQEKEVDVNDDLARELAFYTQAL
Sbjct: 61  LDKLGDISWPENVGWIHKLSLDIDQEKEVDVNDDLARELAFYTQAL 102

[Close]

BLAST of Lcy12g007440 vs. NCBI nr
Match: XP_022926294.1 (probable rRNA-processing protein EBP2 homolog [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-41
Identity = 96/111 (86.49%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-----EEEEDVKLYEPSKNAIY 60
           MGVSDKDARFLNEDTMEDDDLG+EDSDFGSES SESES     EEEE+VKL EPSK AIY
Sbjct: 1   MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIY 60

Query: 61  NVDGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL 107
           N DGLLDKL DISWP+NVEWIH+L LDIDQEKEVDVNDDLARELAFYTQAL
Sbjct: 61  NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQAL 111

[Close]

BLAST of Lcy12g007440 vs. NCBI nr
Match: XP_022958567.1 (probable rRNA-processing protein EBP2 homolog [Cucurbita moschata] >XP_022958569.1 probable rRNA-processing protein EBP2 homolog [Cucurbita moschata])

HSP 1 Score: 176.8 bits (447), Expect = 9.9e-41
Identity = 95/106 (89.62%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLYEPSKNAIYNVDGL 60
           MGVSD+   FLNEDTMEDDDL SEDSDFGSE  SESESEEEEDVKL EPSKNAIYN DGL
Sbjct: 1   MGVSDEKDSFLNEDTMEDDDLDSEDSDFGSE--SESESEEEEDVKLSEPSKNAIYNADGL 60

Query: 61  LDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL 107
           LDKLGDISWPENV WIHKL+LDIDQEKEVDVNDDLARELAFYTQAL
Sbjct: 61  LDKLGDISWPENVGWIHKLSLDIDQEKEVDVNDDLARELAFYTQAL 104

[Close]

BLAST of Lcy12g007440 vs. NCBI nr
Match: KAG7035578.1 (putative rRNA-processing protein EBP2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.4 bits (446), Expect = 1.3e-40
Identity = 94/106 (88.68%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLYEPSKNAIYNVDGL 60
           MGVSD+   FLNEDTMEDDDL SEDSDFGSE  SESESEEEEDVKL EPSKNA+YN DGL
Sbjct: 1   MGVSDQKDSFLNEDTMEDDDLDSEDSDFGSE--SESESEEEEDVKLSEPSKNAVYNADGL 60

Query: 61  LDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL 107
           LDKLGDISWPENV WIHKL+LDIDQEKEVDVNDDLARELAFYTQAL
Sbjct: 61  LDKLGDISWPENVGWIHKLSLDIDQEKEVDVNDDLARELAFYTQAL 104

[Close]

BLAST of Lcy12g007440 vs. NCBI nr
Match: KAA0055124.1 (putative rRNA-processing protein EBP2-like protein [Cucumis melo var. makuwa] >TYK20735.1 putative rRNA-processing protein EBP2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 4.9e-40
Identity = 94/107 (87.85%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLYEPSKNAIYNVDG 60
           MGVS KDA FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+L EPSKNAIYN DG
Sbjct: 10  MGVSIKDAEFLNEDTVEDDDLSSEDSEFESESESGSESEEEEEDVELSEPSKNAIYNADG 69

Query: 61  LLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL 107
           LLDKLGDISWPENVEWIHKLT DIDQEKEVDVNDDLARELAFYTQAL
Sbjct: 70  LLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQAL 116

[Close]

BLAST of Lcy12g007440 vs. NCBI nr
Match: XP_008467285.1 (PREDICTED: probable rRNA-processing protein EBP2 homolog [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 8.4e-40
Identity = 94/107 (87.85%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLYEPSKNAIYNVDG 60
           MGVS KDA FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+L EPSKNAIYN DG
Sbjct: 1   MGVSIKDADFLNEDTVEDDDLSSEDSEFESESESGSESEEEEEDVELSEPSKNAIYNADG 60

Query: 61  LLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL 107
           LLDKLGDISWPENVEWIHKLT DIDQEKEVDVNDDLARELAFYTQAL
Sbjct: 61  LLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQAL 107

[Close]

BLAST of Lcy12g007440 vs. TAIR 10
Match: AT3G22660.1 (rRNA processing protein-related )

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-24
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 11  LNEDTMEDDDLGSED----SDFGSESASESESEEEEDVKLYEPSKNAIYNVDGLLDKLGD 70
           L ED + DD++   D    +D  +ES S+S++E E   KL EP+K AIYN DGLLDKL D
Sbjct: 3   LEEDIVSDDEMNMIDEDDATDSEAESLSDSDTENEITEKLAEPTKTAIYNRDGLLDKLQD 62

Query: 71  ISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL 107
           ISWPE+V+W HKLT++IDQ   VDVNDDLARE AFYTQAL
Sbjct: 63  ISWPEDVDWTHKLTVEIDQGGAVDVNDDLARETAFYTQAL 102

The following BLAST results are available for this feature:

BLAST of Lcy12g007440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUJ5	3.3e-23	61.00	Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Lcy12g007440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEP4	7.4e-42	86.49	probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1H264	4.8e-41	89.62	probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3DB33	2.4e-40	87.85	Putative rRNA-processing protein EBP2-like protein OS=Cucumis melo var. makuwa O...	[more]
A0A1S3CT69	4.1e-40	87.85	probable rRNA-processing protein EBP2 homolog OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A6J1K7Q8	9.1e-40	86.79	probable rRNA-processing protein EBP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Lcy12g007440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926294.1	1.5e-41	86.49	probable rRNA-processing protein EBP2 homolog [Cucurbita moschata]	[more]
XP_022958567.1	9.9e-41	89.62	probable rRNA-processing protein EBP2 homolog [Cucurbita moschata] >XP_022958569...	[more]
KAG7035578.1	1.3e-40	88.68	putative rRNA-processing protein EBP2-like protein [Cucurbita argyrosperma subsp...	[more]
KAA0055124.1	4.9e-40	87.85	putative rRNA-processing protein EBP2-like protein [Cucumis melo var. makuwa] >T...	[more]
XP_008467285.1	8.4e-40	87.85	PREDICTED: probable rRNA-processing protein EBP2 homolog [Cucumis melo]	[more]

BLAST of Lcy12g007440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22660.1	2.4e-24	61.00	rRNA processing protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008610	Eukaryotic rRNA processing	PFAM	PF05890	Ebp2	coord: 31..106 e-value: 3.6E-15 score: 56.2
IPR008610	Eukaryotic rRNA processing	PANTHER	PTHR13028	RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED	coord: 12..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	PANTHER	PTHR13028:SF1	BNAC03G42920D PROTEIN	coord: 12..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g007440.1	Lcy12g007440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0034399	nuclear periphery
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor