Lcy12g006160 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g006160
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionTransposase
LocationChr12: 27008454 .. 27011281 (-)
RNA-Seq ExpressionLcy12g006160
SyntenyLcy12g006160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGAAGAATATAGCTTCAGATTTGAGATGTTCATTGAAAATGGATTACGACATTTGAATAGACCAAATGTCATTCATTGTCCATGTTTGAAGTGTGTGAATGTAAAATTTCAAAATGTGAATATAGTAAGAGACCACTTATTTGTTCATGGTATCGATCAAAGCTATAAGACATGGATTTGGCATGGTGAATCACTATCAAAGAAGAAAGACAATGAAAATGTGTCTATTAGCGGAAAAGTTGAAGTCGAAGATGACAATGAAGATGTTGAGGACACAATAGAAATGTTTGAGGCTGCAAATAATTATTTTAATGACAAATCTAAGGTTTTTGACGAACTATTAGAAGATGCCAAGAAACCATTATACCTGGATTGTAATAATTTTACCAAGATATCTACTTTGGTAAAGTTATATAATTTTAAGGCGAAATTTGGATGGAGCGATAAGAGTTTCACTGAGCTATTGACATTACTTTGTGACATCTTACCAAGCCTTAATCAAATTCCAACTTCAACATATCAAGCAAAGAAGACTTTGTGTACTCTTGGAATGAAGTATGAGAAAATACACGCGTGTAGTAGTAATTGTTGTTTGTTTAGAAAGAAACTATCTGATGTAGAAGTATGCCCTATATGTGGAACATCAAGATGGACACTTATGACATCCTGCAGATGCACTGTCGTGGAAACAAGTAGACAATTTGTGGCCAGAGTTTGGTTTAAAACCTAGAAATCTTCGTCTTGCTCTTTTTGTGGATGGTGTCAATCCACACAGTGATCTCAGTAGTAGATATAATTGTTGGGCAGTTATGTTGGTGACGTATAATCTACCACCATGGTTGTGCATGAAACAGAAATTTTTATGTTAACTACATTAATATTTGACCCCAAACAACCAGGAAATGACATATATGTTTATTTAGCTCCGTTAGTTGAAGATTTGAAAATGCTTTGGAATGAGGGTGTAGAATGTTATGATGTACATGAAGAACGATTTTCCACACTCAAAGCTATTTTATTGTGGACTATTAATGATTTTCCTGCGTATGACAATTTGAGTGATTGTAGATAAAAGGATATCATGCATGTCCAATTTGTGGGGAGAAAATTGCATCAACTTATTTGCCTAAAGGAAAAAAGATGGCCTATCTTGGACATCGAAAGTTTTTACCCCATAACTGAAGGAGTGTACAAGACACTAGCGGAAGCAATTTGGATTGAAAACCTCTCGATTTCAATTAATTTTAGAATGAAAAGCATGTCAAAATCGAGCAAAAAAGCAGAACATTGAAGTTTACCCACCTTTTGGATGAACTCAAGTTGTTCCTTCGGTGGTTTTGGATCACAAATGAGTTGTTGACGACCACGAGAGTCTTCCCCGCTATCCTCCGGCCTTAGAACGGCTTGTGGGAGCCTTGAACGTGATGAATTTTGTTGAAGAAAGAGATGGATTTTGAGAGAGATTTTCTTTGTTTTTAACTTCGTGAAAGAACTCCAGCAAAACCATATGAATTGTCCACCTTTTCAGCTTCATCCTTTTCCTTATAAAGGGAGAATCTCGTGCAATAATAATCAAGCAAGAGAAGACATCACATTGCTTATGAAATTGGTGTAAATTTAGGTGGCATTCTATGAGATTAAGCATGGATGTACTTGGTGTTAAAAATCAGCCTATTTGCCTCTTGATTTTCTTTCTAAAAGAAAATCATTAATTAAATTAATTTCTATTTTAAAGATTAATCAAATAATCTTTAATGAAATCAATTTCTATAATTAAACAAATTTAATTATATTATATTTATCTAATTTTAATATCTTATATTAAAATAAATAATACACCAATCTAATCTCTCTCAATATCGATTTTGAATACGAATCCCTATTCATATCCAAAACTAAATATGTATCGTATACATGTCCTCGATATATCTCTAACTCTCCTTGTAGTTTAATTCATAATTAAACTTATAATACGTCAAATATATCACATATAATTAACGTTAAATTCCTAAACCGAATTTGAACGTTTCGAATTATCTCATCACTATGTTCTAAGGTTTATTCTGTATGAACTAGTAGGGGGACCTAATGGACCTACAGATCATGGGCTCCAATGATCCGATATTAACCGGCTAAACTCTTTTAACCTAGTTAACCAACATTCGTTAACTACCGGGACACTCCACTATAGCCCGATAATTGAACTCCCCTCACTGTAGATATATTTTTGTCCACCCGATATAACCATGATTAGTAAGTCGACCCTTCATAGGTTGTTCGTAACTAGAGCTGGGTCAAATGTCCATTTTACCCATGAAGTTACATCTTGTTTCTTAAGTCCCCACTAAGTCCCTAATGAACAATTGGTTTGTGGTCCGACCACTAAACCTAAAACCTCTCGGGCCAATGAGAGGGTGGGATCCGTCCAAATGCTAAATACTTGTTATGCTTCTTATGGAAGGAGAAGATTACGGTTAATATTCGTTCTTATTCATTTTATCATATTGTTGCATCAGTCCAAATGCTAAATACACTTTGGAGATTTTCTGGAATCTATGATAATCCAGTTGCACATCAACGACACCGTTCTTGGGAATTATTGAAATGATTACATAACAATGATGATTCTGCATGGGTAATCGGGGGGGGGGGGGACTTTAATGCCACTTTACTCAATGAAGACAAAGAAGGAGGTGCTCTTTCACGTCTATCTTATATGGATCAGTTTCGAAATGCTATAGATGATTGTAATTTGCAGGAGATGGAGTATGTGGGTGATATGTTTACTTGGTCAAACAGACAGCTGAACAGGTTGCAAATTAA

mRNA sequence

ATGTCAGAAGAATATAGCTTCAGATTTGAGATGTTCATTGAAAATGGATTACGACATTTGAATAGACCAAATGTCATTCATTGTCCATGTTTGAAGTGTGTGAATGTAAAATTTCAAAATGTGAATATAGTAAGAGACCACTTATTTGTTCATGGTATCGATCAAAGCTATAAGACATGGATTTGGCATGGTGAATCACTATCAAAGAAGAAAGACAATGAAAATGTGTCTATTAGCGGAAAAGTTGAAGTCGAAGATGACAATGAAGATGTTGAGGACACAATAGAAATGTTTGAGGCTGCAAATAATTATTTTAATGACAAATCTAAGGTTTTTGACGAACTATTAGAAGATGCCAAGAAACCATTATACCTGGATTGTAATAATTTTACCAAGATATCTACTTTGACAGCTGAACAGGTTGCAAATTAA

Coding sequence (CDS)

ATGTCAGAAGAATATAGCTTCAGATTTGAGATGTTCATTGAAAATGGATTACGACATTTGAATAGACCAAATGTCATTCATTGTCCATGTTTGAAGTGTGTGAATGTAAAATTTCAAAATGTGAATATAGTAAGAGACCACTTATTTGTTCATGGTATCGATCAAAGCTATAAGACATGGATTTGGCATGGTGAATCACTATCAAAGAAGAAAGACAATGAAAATGTGTCTATTAGCGGAAAAGTTGAAGTCGAAGATGACAATGAAGATGTTGAGGACACAATAGAAATGTTTGAGGCTGCAAATAATTATTTTAATGACAAATCTAAGGTTTTTGACGAACTATTAGAAGATGCCAAGAAACCATTATACCTGGATTGTAATAATTTTACCAAGATATCTACTTTGACAGCTGAACAGGTTGCAAATTAA

Protein sequence

MSEEYSFRFEMFIENGLRHLNRPNVIHCPCLKCVNVKFQNVNIVRDHLFVHGIDQSYKTWIWHGESLSKKKDNENVSISGKVEVEDDNEDVEDTIEMFEAANNYFNDKSKVFDELLEDAKKPLYLDCNNFTKISTLTAEQVAN
Homology
BLAST of Lcy12g006160 vs. ExPASy TrEMBL
Match: A0A6J1DBH3 (uncharacterized protein LOC111018955 OS=Momordica charantia OX=3673 GN=LOC111018955 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.9e-42
Identity = 90/136 (66.18%), Postives = 107/136 (78.68%), Query Frame = 0

Query: 1   MSEEYSFRFEMFIENGLRHLNRPNVIHCPCLKCVNVKFQNVNIVRDHLFVHGIDQSYKTW 60
           M  EYS   EMFIENGLRH  R NVI CPCLKCVN K Q+VN+VRDHLFV+GIDQSYKTW
Sbjct: 23  MLTEYSIGVEMFIENGLRHSKRSNVICCPCLKCVNAKSQHVNVVRDHLFVYGIDQSYKTW 82

Query: 61  IWHGESLSKKKDNENVSISGKVEVEDDNEDVEDTIEMFEAANNYFNDKSKVFDELLEDAK 120
           IWHGES+S K++ E++S S + +VEDD  D +DTI MFEAA +YF++  + F+ELL DAK
Sbjct: 83  IWHGESISIKRNIESMSTSAQEQVEDD--DFDDTIGMFEAAYDYFDNSPENFEELLGDAK 142

Query: 121 KPLYLDCNNFTKISTL 137
           KPLY +C NFTKI  L
Sbjct: 143 KPLYPNCKNFTKIFAL 156

BLAST of Lcy12g006160 vs. ExPASy TrEMBL
Match: A0A6J1E201 (uncharacterized protein LOC111025252 OS=Momordica charantia OX=3673 GN=LOC111025252 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.7e-41
Identity = 91/136 (66.91%), Postives = 106/136 (77.94%), Query Frame = 0

Query: 1   MSEEYSFRFEMFIENGLRHLNRPNVIHCPCLKCVNVKFQNVNIVRDHLFVHGIDQSYKTW 60
           MS EYS   EMFIENGLRH  R NVI CPCLKCVN K Q+VN+VRDHLFV+GIDQSYKT 
Sbjct: 23  MSTEYSLGVEMFIENGLRHSKRSNVICCPCLKCVNAKSQHVNVVRDHLFVYGIDQSYKTX 82

Query: 61  IWHGESLSKKKDNENVSISGKVEVEDDNEDVEDTIEMFEAANNYFNDKSKVFDELLEDAK 120
           IWHGES+S K++ E++S S + EV DD  D +DTI  FEAA +YF+D  + F+ELL DAK
Sbjct: 83  IWHGESISIKRNIESMSTSAQEEVXDD--DFDDTIGXFEAAYDYFDDNPQNFEELLGDAK 142

Query: 121 KPLYLDCNNFTKISTL 137
           KPLY +C NFTKIS L
Sbjct: 143 KPLYPNCKNFTKISAL 156

BLAST of Lcy12g006160 vs. ExPASy TrEMBL
Match: A0A6J1CXT3 (uncharacterized protein LOC111015258 OS=Momordica charantia OX=3673 GN=LOC111015258 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.4e-30
Identity = 69/136 (50.74%), Postives = 93/136 (68.38%), Query Frame = 0

Query: 1   MSEEYSFRFEMFIENGLRHLNRPNVIHCPCLKCVNVKFQNVNIVRDHLFVHGIDQSYKTW 60
           MS EY+   E FIENGLRH    N I CPCL C N   Q +NIVR+HL ++GID+SYK W
Sbjct: 1   MSVEYNLGVENFIENGLRHSKGSNCIWCPCLNCANAVLQELNIVREHLSIYGIDKSYKIW 60

Query: 61  IWHGESLSKKKDNENVSISGKVEVEDDNEDVEDTIEMFEAANNYFNDKSKVFDELLEDAK 120
           IWHGE L  K  +E+ +  GK + +DD   +++T  MF+AA +YF++KS+ F+++L DA+
Sbjct: 61  IWHGEQLPMKDKDESGTTKGKEDYDDDG--IKNTTNMFKAAQDYFSNKSENFEQVLIDAQ 120

Query: 121 KPLYLDCNNFTKISTL 137
           KPLY    NFTK+  L
Sbjct: 121 KPLYSSNKNFTKVFAL 134

BLAST of Lcy12g006160 vs. ExPASy TrEMBL
Match: A0A5D3CAP5 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00350 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 60/136 (44.12%), Postives = 82/136 (60.29%), Query Frame = 0

Query: 1   MSEEYSFRFEMFIENGLRHLNRPNVIHCPCLKCVNVKFQNVNIVRDHLFVHGIDQSYKTW 60
           MS EY    E FI+ GL H    N I CPCLKC N   ++V+IVR HL+ +GID+SYK W
Sbjct: 11  MSREYDVEVESFIQLGLSHAKGSNSIRCPCLKCGNRLLKDVSIVRYHLYANGIDKSYKIW 70

Query: 61  IWHGESLSKKKDNENVSISGKVEVEDDNEDVEDTIEMFEAANNYFNDKSKVFDELLEDAK 120
            WHGE L+ +     +   G  + E D  D+ +T+ M ++A++   + S  FD + +DAK
Sbjct: 71  FWHGEDLNSETVTSKMENIGDEKYEHD--DLFNTVNMLQSAHDESCNTSNTFDTMFDDAK 130

Query: 121 KPLYLDCNNFTKISTL 137
           KPLY  C  FTK+S L
Sbjct: 131 KPLYPGCKKFTKLSAL 144

BLAST of Lcy12g006160 vs. ExPASy TrEMBL
Match: A0A5D3DSZ9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold7319G00190 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 59/136 (43.38%), Postives = 84/136 (61.76%), Query Frame = 0

Query: 1   MSEEYSFRFEMFIENGLRHLNRPNVIHCPCLKCVNVKFQNVNIVRDHLFVHGIDQSYKTW 60
           MS EY    + FI+ GL H    N I CPCLKC N   ++V+IVR HL+ +GID+SYK W
Sbjct: 11  MSREYDVGVKSFIQFGLSHAKGSNSIRCPCLKCENRLLKDVSIVRYHLYANGIDKSYKIW 70

Query: 61  IWHGESLSKKKDNENVSISGKVEVEDDNEDVEDTIEMFEAANNYFNDKSKVFDELLEDAK 120
            WHGE L+ K       +   V+ + + +D+ +T+ MF++A++   + S  FD + +DAK
Sbjct: 71  FWHGEDLNSK--TVTSKMENIVDEKYEQDDLFNTVNMFQSAHDGSCNTSNTFDTMFDDAK 130

Query: 121 KPLYLDCNNFTKISTL 137
           KPLYL C  FTK+  L
Sbjct: 131 KPLYLGCKKFTKLPAL 144

BLAST of Lcy12g006160 vs. NCBI nr
Match: XP_022150919.1 (uncharacterized protein LOC111018955 [Momordica charantia])

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-41
Identity = 90/136 (66.18%), Postives = 107/136 (78.68%), Query Frame = 0

Query: 1   MSEEYSFRFEMFIENGLRHLNRPNVIHCPCLKCVNVKFQNVNIVRDHLFVHGIDQSYKTW 60
           M  EYS   EMFIENGLRH  R NVI CPCLKCVN K Q+VN+VRDHLFV+GIDQSYKTW
Sbjct: 23  MLTEYSIGVEMFIENGLRHSKRSNVICCPCLKCVNAKSQHVNVVRDHLFVYGIDQSYKTW 82

Query: 61  IWHGESLSKKKDNENVSISGKVEVEDDNEDVEDTIEMFEAANNYFNDKSKVFDELLEDAK 120
           IWHGES+S K++ E++S S + +VEDD  D +DTI MFEAA +YF++  + F+ELL DAK
Sbjct: 83  IWHGESISIKRNIESMSTSAQEQVEDD--DFDDTIGMFEAAYDYFDNSPENFEELLGDAK 142

Query: 121 KPLYLDCNNFTKISTL 137
           KPLY +C NFTKI  L
Sbjct: 143 KPLYPNCKNFTKIFAL 156

BLAST of Lcy12g006160 vs. NCBI nr
Match: XP_022158786.1 (uncharacterized protein LOC111025252 [Momordica charantia])

HSP 1 Score: 178.7 bits (452), Expect = 3.5e-41
Identity = 91/136 (66.91%), Postives = 106/136 (77.94%), Query Frame = 0

Query: 1   MSEEYSFRFEMFIENGLRHLNRPNVIHCPCLKCVNVKFQNVNIVRDHLFVHGIDQSYKTW 60
           MS EYS   EMFIENGLRH  R NVI CPCLKCVN K Q+VN+VRDHLFV+GIDQSYKT 
Sbjct: 23  MSTEYSLGVEMFIENGLRHSKRSNVICCPCLKCVNAKSQHVNVVRDHLFVYGIDQSYKTX 82

Query: 61  IWHGESLSKKKDNENVSISGKVEVEDDNEDVEDTIEMFEAANNYFNDKSKVFDELLEDAK 120
           IWHGES+S K++ E++S S + EV DD  D +DTI  FEAA +YF+D  + F+ELL DAK
Sbjct: 83  IWHGESISIKRNIESMSTSAQEEVXDD--DFDDTIGXFEAAYDYFDDNPQNFEELLGDAK 142

Query: 121 KPLYLDCNNFTKISTL 137
           KPLY +C NFTKIS L
Sbjct: 143 KPLYPNCKNFTKISAL 156

BLAST of Lcy12g006160 vs. NCBI nr
Match: XP_022145911.1 (uncharacterized protein LOC111015258 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-30
Identity = 69/136 (50.74%), Postives = 93/136 (68.38%), Query Frame = 0

Query: 1   MSEEYSFRFEMFIENGLRHLNRPNVIHCPCLKCVNVKFQNVNIVRDHLFVHGIDQSYKTW 60
           MS EY+   E FIENGLRH    N I CPCL C N   Q +NIVR+HL ++GID+SYK W
Sbjct: 1   MSVEYNLGVENFIENGLRHSKGSNCIWCPCLNCANAVLQELNIVREHLSIYGIDKSYKIW 60

Query: 61  IWHGESLSKKKDNENVSISGKVEVEDDNEDVEDTIEMFEAANNYFNDKSKVFDELLEDAK 120
           IWHGE L  K  +E+ +  GK + +DD   +++T  MF+AA +YF++KS+ F+++L DA+
Sbjct: 61  IWHGEQLPMKDKDESGTTKGKEDYDDDG--IKNTTNMFKAAQDYFSNKSENFEQVLIDAQ 120

Query: 121 KPLYLDCNNFTKISTL 137
           KPLY    NFTK+  L
Sbjct: 121 KPLYSSNKNFTKVFAL 134

BLAST of Lcy12g006160 vs. NCBI nr
Match: TYK26897.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 3.3e-23
Identity = 59/136 (43.38%), Postives = 84/136 (61.76%), Query Frame = 0

Query: 1   MSEEYSFRFEMFIENGLRHLNRPNVIHCPCLKCVNVKFQNVNIVRDHLFVHGIDQSYKTW 60
           MS EY    + FI+ GL H    N I CPCLKC N   ++V+IVR HL+ +GID+SYK W
Sbjct: 11  MSREYDVGVKSFIQFGLSHAKGSNSIRCPCLKCENRLLKDVSIVRYHLYANGIDKSYKIW 70

Query: 61  IWHGESLSKKKDNENVSISGKVEVEDDNEDVEDTIEMFEAANNYFNDKSKVFDELLEDAK 120
            WHGE L+ K       +   V+ + + +D+ +T+ MF++A++   + S  FD + +DAK
Sbjct: 71  FWHGEDLNSK--TVTSKMENIVDEKYEQDDLFNTVNMFQSAHDGSCNTSNTFDTMFDDAK 130

Query: 121 KPLYLDCNNFTKISTL 137
           KPLYL C  FTK+  L
Sbjct: 131 KPLYLGCKKFTKLPAL 144

BLAST of Lcy12g006160 vs. NCBI nr
Match: TYK08420.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 3.3e-23
Identity = 60/136 (44.12%), Postives = 82/136 (60.29%), Query Frame = 0

Query: 1   MSEEYSFRFEMFIENGLRHLNRPNVIHCPCLKCVNVKFQNVNIVRDHLFVHGIDQSYKTW 60
           MS EY    E FI+ GL H    N I CPCLKC N   ++V+IVR HL+ +GID+SYK W
Sbjct: 11  MSREYDVEVESFIQLGLSHAKGSNSIRCPCLKCGNRLLKDVSIVRYHLYANGIDKSYKIW 70

Query: 61  IWHGESLSKKKDNENVSISGKVEVEDDNEDVEDTIEMFEAANNYFNDKSKVFDELLEDAK 120
            WHGE L+ +     +   G  + E D  D+ +T+ M ++A++   + S  FD + +DAK
Sbjct: 71  FWHGEDLNSETVTSKMENIGDEKYEHD--DLFNTVNMLQSAHDESCNTSNTFDTMFDDAK 130

Query: 121 KPLYLDCNNFTKISTL 137
           KPLY  C  FTK+S L
Sbjct: 131 KPLYPGCKKFTKLSAL 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DBH35.9e-4266.18uncharacterized protein LOC111018955 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1E2011.7e-4166.91uncharacterized protein LOC111025252 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1CXT31.4e-3050.74uncharacterized protein LOC111015258 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A5D3CAP51.6e-2344.12Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00350 PE... [more]
A0A5D3DSZ91.6e-2343.38Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold7319G00190 P... [more]
Match NameE-valueIdentityDescription
XP_022150919.11.2e-4166.18uncharacterized protein LOC111018955 [Momordica charantia][more]
XP_022158786.13.5e-4166.91uncharacterized protein LOC111025252 [Momordica charantia][more]
XP_022145911.12.8e-3050.74uncharacterized protein LOC111015258 [Momordica charantia][more]
TYK26897.13.3e-2343.38transposase [Cucumis melo var. makuwa][more]
TYK08420.13.3e-2344.12transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 81..101
NoneNo IPR availablePANTHERPTHR10775:SF145TRANSPOSASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..135
NoneNo IPR availablePANTHERPTHR10775UNCHARACTERIZEDcoord: 1..135
IPR029480Transposase-associated domainPFAMPF13963Transpos_assoccoord: 2..65
e-value: 2.2E-15
score: 56.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g006160.1Lcy12g006160.1mRNA