Lcy12g005620 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g005620
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionULP_PROTEASE domain-containing protein
LocationChr12: 22306217 .. 22307429 (-)
RNA-Seq ExpressionLcy12g005620
SyntenyLcy12g005620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGAGGTATGTTTATTTTCAATTGAAATATTTTTTTTAAAAGAAATATAGTGAATAGATATTTTTTCTATGAGCCTCCTGCCAAAGCTAAGCCCATAGTACAATCAAGCAAATATACGGATGTCCATGTTACTATTGGGCTCCTGAATAGATACGCGATGCTTTCGATGCAACAAGAAGATACGCTAACGATCAATATGCACGAGCGTATCTTAGCGTATCTTTGCAACAGTATATTTACATCGCGAAGACATCATGCAATATTATAAGAATGTTGAGATAGGTTACTCATGCATACTCACGTCGTAAGTAAACAAAGTTATTACACATTTTGATTCATGAGTTTTCTATTTGCTTAGTAGAATGAGATTTTCTTAATATTTAAGACTTGAAGTTGTTTGTGTTAGTTTAGGGGGGTGATAAATACTTGTATTATGTTTTGAAAGTGTTTGAGTTAAGTTTTAGTATTGGAGGTGTTGGTTTACAAGTTTAGTTGAGTTTGGGGGGGGGGGGGGGATTTATTATGCTTTAAAAGTGTTTGTGAGTTGATAAATATTTGTATTATGCTTTGAAAAATGCTTGACTTAAGTTTTAGTATTGGAGGTGTTGGTTTACAAGTTTAGTTGAGTTTGGGGGGGGGGGGGGGGGGTGATGTATTATGCTTTGGATGTGTTTGAGTTGATAAATACTTGTATTATTTTCTTTAGGTACCTCTGGACTGTACTTCATCCCGAGATAACAAACAAGTTTTTTATGGTTGATCAAGCAACAATCTCATCGTACGTGAAGTCTCAAGAGCTTCATTCTAGAAATCTATCTAACATACTAGATATGGTTGATTTGGATCAACTAGTTCTCATTCCCTTTAACATTGGGTAAGTAATTCTTACTAGTGATATTTACTTCATTGTAACTTTTTTTTATTTATAAATAATAATATGATCAAAATTGTGATTCTACATAGTCATCATTGGATTTTGATCGCGATGCAGCCTCGGGAAAACACTGTGTATATATTGAATTCTTTGTGCAGTAAAGTTGAAGAAGAGTTTAGTGGAACTATAAATATGTAAGTGTGTCTCAAATTTTTGTAGTGTTTAAAAGGAAAAATAAAACTTGAATGGTTGTAATGTTTTAAATTATGTAGGGGGTTGATAATGTGGCAAGCTAAGCACTCGCTTCCTCAATATCGATCTGCTATTACTTAG

mRNA sequence

ATGACAAAGAGGTACCTCTGGACTGTACTTCATCCCGAGATAACAAACAAGTTTTTTATGGTTGATCAAGCAACAATCTCATCGTACGTGAAGTCTCAAGAGCTTCATTCTAGAAATCTATCTAACATACTAGATATGGTTGATTTGGATCAACTAGTTCTCATTCCCTTTAACATTGGGGGGTTGATAATGTGGCAAGCTAAGCACTCGCTTCCTCAATATCGATCTGCTATTACTTAG

Coding sequence (CDS)

ATGACAAAGAGGTACCTCTGGACTGTACTTCATCCCGAGATAACAAACAAGTTTTTTATGGTTGATCAAGCAACAATCTCATCGTACGTGAAGTCTCAAGAGCTTCATTCTAGAAATCTATCTAACATACTAGATATGGTTGATTTGGATCAACTAGTTCTCATTCCCTTTAACATTGGGGGGTTGATAATGTGGCAAGCTAAGCACTCGCTTCCTCAATATCGATCTGCTATTACTTAG

Protein sequence

MTKRYLWTVLHPEITNKFFMVDQATISSYVKSQELHSRNLSNILDMVDLDQLVLIPFNIGGLIMWQAKHSLPQYRSAIT
Homology
[Close]
BLAST of Lcy12g005620 vs. ExPASy TrEMBL
Match: A0A6J1C398 (uncharacterized protein LOC111007859 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111007859 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13
Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = 0 

Query: 5   YLWTVLHPEITNKFFMVDQATISSYVKSQELHSRNLSNILDMVDLDQLVLIPFNIG---- 64
           YLW V   EIT KF +VD ATIS YVKSQE   RNL+N L+MV+L+QLVLIP+  G    
Sbjct: 493 YLWDVYEYEITKKFLIVDPATISPYVKSQEYRFRNLANRLEMVNLEQLVLIPYKSGKIQE 552

Query: 65  --------GLIMWQAKHSLPQYRS 77
                    L +WQAKHS+ +YR+
Sbjct: 553 DYQRVINTSLKIWQAKHSIQRYRT 576

[Close]
BLAST of Lcy12g005620 vs. ExPASy TrEMBL
Match: A0A5D3D7Q9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1274G00260 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.0e-11
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 13  EITNKFFMVDQATISSYVKSQELHSRNLSNILDMVDLDQLVLIPFNIGGLIMWQAKHSLP 72
           +    FF++DQ+ ISS++K ++L SRNL+N L+ V+L+Q VLIP+N GGL  WQAKH L 
Sbjct: 493 DCARNFFVIDQSKISSHIKDRDLRSRNLANQLEAVNLEQKVLIPYNTGGLKTWQAKHDLQ 552

Query: 73  QYR 76
           +YR
Sbjct: 553 RYR 555

[Close]
BLAST of Lcy12g005620 vs. ExPASy TrEMBL
Match: A0A5A7SMS6 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002020 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 13  EITNKFFMVDQATISSYVKSQELHSRNLSNILDMVDLDQLVLIPFNIGGLIMWQAKHSLP 72
           +    FF++DQ+ I S++K ++L SRNL+N L+ V L+Q VLIP+N GGL  WQAKH L 
Sbjct: 706 DCARNFFVIDQSKILSHIKDRDLRSRNLANQLEAVSLEQKVLIPYNTGGLKTWQAKHDLQ 765

Query: 73  QYRS 77
           +YRS
Sbjct: 766 RYRS 769

[Close]
BLAST of Lcy12g005620 vs. ExPASy TrEMBL
Match: A0A6J1C2V2 (uncharacterized protein LOC111007859 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111007859 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 45/107 (42.06%), Postives = 55/107 (51.40%), Query Frame = 0 

Query: 5   YLWTVLHPEITNKFFMVDQATISSYVKSQELHSRNLSNILDMVDLDQLVLIPFNIG---- 64
           YLW V   EIT KF +VD ATIS YVKSQE   RNL+N L+MV+L+QLVLIP+  G    
Sbjct: 493 YLWDVYEYEITKKFLIVDPATISPYVKSQEYRFRNLANRLEMVNLEQLVLIPYKSGCHWM 552

Query: 65  -------------------------------GLIMWQAKHSLPQYRS 77
                                           L +WQAKHS+ +YR+
Sbjct: 553 LIIINLRENCVYVLDSLRRKIQEDYQRVINTSLKIWQAKHSIQRYRT 599

[Close]
BLAST of Lcy12g005620 vs. ExPASy TrEMBL
Match: A0A6J1C2H7 (uncharacterized protein LOC111007859 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007859 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 45/107 (42.06%), Postives = 55/107 (51.40%), Query Frame = 0 

Query: 5   YLWTVLHPEITNKFFMVDQATISSYVKSQELHSRNLSNILDMVDLDQLVLIPFNIG---- 64
           YLW V   EIT KF +VD ATIS YVKSQE   RNL+N L+MV+L+QLVLIP+  G    
Sbjct: 493 YLWDVYEYEITKKFLIVDPATISPYVKSQEYRFRNLANRLEMVNLEQLVLIPYKSGCHWM 552

Query: 65  -------------------------------GLIMWQAKHSLPQYRS 77
                                           L +WQAKHS+ +YR+
Sbjct: 553 LIIINLRENCVYVLDSLRRKIQEDYQRVINTSLKIWQAKHSIQRYRT 599

[Close]
BLAST of Lcy12g005620 vs. NCBI nr
Match: XP_022136079.1 (uncharacterized protein LOC111007859 isoform X3 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 6.5e-13
Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = 0 

Query: 5   YLWTVLHPEITNKFFMVDQATISSYVKSQELHSRNLSNILDMVDLDQLVLIPFNIG---- 64
           YLW V   EIT KF +VD ATIS YVKSQE   RNL+N L+MV+L+QLVLIP+  G    
Sbjct: 493 YLWDVYEYEITKKFLIVDPATISPYVKSQEYRFRNLANRLEMVNLEQLVLIPYKSGKIQE 552

Query: 65  --------GLIMWQAKHSLPQYRS 77
                    L +WQAKHS+ +YR+
Sbjct: 553 DYQRVINTSLKIWQAKHSIQRYRT 576

[Close]
BLAST of Lcy12g005620 vs. NCBI nr
Match: XP_038895930.1 (uncharacterized protein LOC120084092 isoform X2 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-11
Identity = 49/108 (45.37%), Postives = 55/108 (50.93%), Query Frame = 0 

Query: 6   LWTVLHPEITNKFFMVDQATISSYVKSQELHSRNLSNILDMVDLDQLVLIPFNIG----- 65
           LW     EIT KF +VDQATISS+VK QEL S+NL N L+MV LDQLVLIP+N G     
Sbjct: 525 LWNACDSEITKKFVIVDQATISSHVKPQELRSKNLINRLEMVSLDQLVLIPYNTGCHWIL 584

Query: 66  ------------------------------GLIMWQAKHSLPQYRSAI 79
                                          L  WQAKHSL QYR+ I
Sbjct: 585 IIINLQENCVYVMDSLRSKILEEFQGVINTSLKNWQAKHSLEQYRTRI 632

[Close]
BLAST of Lcy12g005620 vs. NCBI nr
Match: XP_038895921.1 (uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_038895924.1 uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_038895927.1 uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 49/109 (44.95%), Postives = 55/109 (50.46%), Query Frame = 0 

Query: 6   LWTVLHPEITNKFFMVDQATISSYVKSQELHSRNLSNILDMVDLDQLVLIPFNIG----- 65
           LW     EIT KF +VDQATISS+VK QEL S+NL N L+MV LDQLVLIP+N G     
Sbjct: 525 LWNACDSEITKKFVIVDQATISSHVKPQELRSKNLINRLEMVSLDQLVLIPYNTGSCHWI 584

Query: 66  -------------------------------GLIMWQAKHSLPQYRSAI 79
                                           L  WQAKHSL QYR+ I
Sbjct: 585 LIIINLQENCVYVMDSLRSKILEEFQGVINTSLKNWQAKHSLEQYRTRI 633

[Close]
BLAST of Lcy12g005620 vs. NCBI nr
Match: TYK19584.1 (uncharacterized protein E5676_scaffold1274G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-10
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 13  EITNKFFMVDQATISSYVKSQELHSRNLSNILDMVDLDQLVLIPFNIGGLIMWQAKHSLP 72
           +    FF++DQ+ ISS++K ++L SRNL+N L+ V+L+Q VLIP+N GGL  WQAKH L 
Sbjct: 493 DCARNFFVIDQSKISSHIKDRDLRSRNLANQLEAVNLEQKVLIPYNTGGLKTWQAKHDLQ 552

Query: 73  QYR 76
           +YR
Sbjct: 553 RYR 555

[Close]
BLAST of Lcy12g005620 vs. NCBI nr
Match: KAA0032342.1 (uncharacterized protein E6C27_scaffold219G002020 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-10
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 13  EITNKFFMVDQATISSYVKSQELHSRNLSNILDMVDLDQLVLIPFNIGGLIMWQAKHSLP 72
           +    FF++DQ+ I S++K ++L SRNL+N L+ V L+Q VLIP+N GGL  WQAKH L 
Sbjct: 706 DCARNFFVIDQSKILSHIKDRDLRSRNLANQLEAVSLEQKVLIPYNTGGLKTWQAKHDLQ 765

Query: 73  QYRS 77
           +YRS
Sbjct: 766 RYRS 769

The following BLAST results are available for this feature:
BLAST of Lcy12g005620 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy12g005620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C3983.2e-1353.57uncharacterized protein LOC111007859 isoform X3 OS=Momordica charantia OX=3673 G... [more]
A0A5D3D7Q95.0e-1153.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SMS61.1e-1053.13DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A6J1C2V21.5e-1042.06uncharacterized protein LOC111007859 isoform X4 OS=Momordica charantia OX=3673 G... [more]
A0A6J1C2H71.5e-1042.06uncharacterized protein LOC111007859 isoform X1 OS=Momordica charantia OX=3673 G... [more]
BLAST of Lcy12g005620 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136079.16.5e-1353.57uncharacterized protein LOC111007859 isoform X3 [Momordica charantia][more]
XP_038895930.11.2e-1145.37uncharacterized protein LOC120084092 isoform X2 [Benincasa hispida][more]
XP_038895921.11.6e-1144.95uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_03889592... [more]
TYK19584.11.0e-1053.97uncharacterized protein E5676_scaffold1274G00260 [Cucumis melo var. makuwa][more]
KAA0032342.12.3e-1053.13uncharacterized protein E6C27_scaffold219G002020 [Cucumis melo var. makuwa][more]
BLAST of Lcy12g005620 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g005620.1Lcy12g005620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity