Lcy12g005070 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g005070
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr12: 19398244 .. 19398834 (-)
RNA-Seq Expression	Lcy12g005070
Synteny	Lcy12g005070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAGGGATCAGGGGGCAGGGTCACTAAATCTATGAGAGCCTTTAATGAGTTCATTGAGGGTTGTTGCCTAGTGGATCCCCCTTTGGTAAACGGGAAATTCACTTGGGCCAATAACAGAGCGCAGAGCAGAATAGATCGTAGCCTGGTGTCGAGGGGGTGGATGGAGTATTTTGGTAGTATTAGACAGGTGTTAGGCCATAGGGTTACGTTGGACCATTGTCCCCTTATTCTCAATTCTGGTATCTGCAGATGGGGCCCTTGCCCTTTCAGGTTCGAGAACATGTGGATGAGCCACCCATCTTTTAAGGCCTCCTTTCCCGCTTGGTGGACTATGCAGGTGAATGGAAAGTGGGAAGGGTACCGCCTTATGGGTAAGCTGAGGGGTCTGAAAAGGATTTTGAGATCGTGGAATAGAATGGTCTTTGGAGATTTTAGAATTAGGAAGCAAGAGATTATGGGGAAAATTAAGGTCATTGATGGGCTGGAAGAAGAAGAGAGCTTAAATGAGGAGGCGAAGGCAGAGAGGATAGCCTTAAAAGTGGAGTTTGTTGAGGTGGTTAGAAGGGAGACTAGTAGTTGGAGGTAG

mRNA sequence

ATGGAACAGGGATCAGGGGGCAGGGTCACTAAATCTATGAGAGCCTTTAATGAGTTCATTGAGGGTTGTTGCCTAGTGGATCCCCCTTTGGTAAACGGGAAATTCACTTGGGCCAATAACAGAGCGCAGAGCAGAATAGATCGTAGCCTGGTGTCGAGGGGGTGGATGGAGTATTTTGGTAGTATTAGACAGGTGTTAGGCCATAGGGTTACGTTGGACCATTGTCCCCTTATTCTCAATTCTGGTATCTGCAGATGGGGCCCTTGCCCTTTCAGGTTCGAGAACATGTGGATGAGCCACCCATCTTTTAAGGCCTCCTTTCCCGCTTGGTGGACTATGCAGGTGAATGGAAAGTGGGAAGGGTACCGCCTTATGGGTAAGCTGAGGGGTCTGAAAAGGATTTTGAGATCGTGGAATAGAATGGTCTTTGGAGATTTTAGAATTAGGAAGCAAGAGATTATGGGGAAAATTAAGGTCATTGATGGGCTGGAAGAAGAAGAGAGCTTAAATGAGGAGGCGAAGGCAGAGAGGATAGCCTTAAAAGTGGAGTTTGTTGAGGTGGTTAGAAGGGAGACTAGTAGTTGGAGGTAG

Coding sequence (CDS)

ATGGAACAGGGATCAGGGGGCAGGGTCACTAAATCTATGAGAGCCTTTAATGAGTTCATTGAGGGTTGTTGCCTAGTGGATCCCCCTTTGGTAAACGGGAAATTCACTTGGGCCAATAACAGAGCGCAGAGCAGAATAGATCGTAGCCTGGTGTCGAGGGGGTGGATGGAGTATTTTGGTAGTATTAGACAGGTGTTAGGCCATAGGGTTACGTTGGACCATTGTCCCCTTATTCTCAATTCTGGTATCTGCAGATGGGGCCCTTGCCCTTTCAGGTTCGAGAACATGTGGATGAGCCACCCATCTTTTAAGGCCTCCTTTCCCGCTTGGTGGACTATGCAGGTGAATGGAAAGTGGGAAGGGTACCGCCTTATGGGTAAGCTGAGGGGTCTGAAAAGGATTTTGAGATCGTGGAATAGAATGGTCTTTGGAGATTTTAGAATTAGGAAGCAAGAGATTATGGGGAAAATTAAGGTCATTGATGGGCTGGAAGAAGAAGAGAGCTTAAATGAGGAGGCGAAGGCAGAGAGGATAGCCTTAAAAGTGGAGTTTGTTGAGGTGGTTAGAAGGGAGACTAGTAGTTGGAGGTAG

Protein sequence

MEQGSGGRVTKSMRAFNEFIEGCCLVDPPLVNGKFTWANNRAQSRIDRSLVSRGWMEYFGSIRQVLGHRVTLDHCPLILNSGICRWGPCPFRFENMWMSHPSFKASFPAWWTMQVNGKWEGYRLMGKLRGLKRILRSWNRMVFGDFRIRKQEIMGKIKVIDGLEEEESLNEEAKAERIALKVEFVEVVRRETSSWR

Homology

[Close]

BLAST of Lcy12g005070 vs. ExPASy TrEMBL
Match: M5WPQ5 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa016677mg PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.4e-38
Identity = 84/198 (42.42%), Postives = 117/198 (59.09%), Query Frame = 0


Query: 2   EQGSGGRVTKSMRAFNEFIEGCCLVDPPLVNGKFTWANNRAQS---RIDRSLVSRGWMEY 61
           E+ + GRVTKSMR FN+FI+   L DP L+N  FTW+N R  +   R+DR LVS  W E+
Sbjct: 417 EKSNEGRVTKSMRDFNDFIQETNLRDPILLNASFTWSNLRENAVCRRLDRFLVSGSWEEH 476

Query: 62  FGSIRQVLGHRVTLDHCPLILNSGICRWGPCPFRFENMWMSHPSFKASFPAWWTMQVNGK 121
           F   R     R+T DHCP+ L+S   +WGP PFRFENMW++HP FK     WW       
Sbjct: 477 FPHYRHKALPRITSDHCPIELDSSRVKWGPSPFRFENMWLNHPDFKRKIKLWWGEDQIPG 536

Query: 122 WEGYRLMGKLRGLKRILRSWNRMVFGDFRIRKQEIMGKIKVIDGLEEEESLNEEAKAERI 181
           WEGY+ M +L+ LK  L+ W++  FGD     +E   ++ V+D  E  E L+   ++ER 
Sbjct: 537 WEGYKFMTRLKMLKSKLKVWSKEEFGDVERDLREAEARLLVLDQREGTEGLDHLLRSERD 596

Query: 182 ALKVEFVEVVRRETSSWR 197
            L ++  ++ +RE   WR
Sbjct: 597 NLLLKIGDLAQREEVKWR 614

[Close]

BLAST of Lcy12g005070 vs. ExPASy TrEMBL
Match: A0A438KJ67 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_76 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 7.0e-38
Identity = 81/199 (40.70%), Postives = 115/199 (57.79%), Query Frame = 0


Query: 1   MEQGSGGRVTKSMRAFNEFIEGCCLVDPPLVNGKFTWAN---NRAQSRIDRSLVSRGWME 60
           +E+  G R+T SM+ F++FI  C L+D PL +  FTW+N   N    R+DR L S  W +
Sbjct: 143 LEKMGGSRLTPSMKDFDDFIRDCELIDSPLRSASFTWSNMQENPVCKRLDRFLYSNEWEQ 202

Query: 61  YFGSIRQVLGHRVTLDHCPLILNSGICRWGPCPFRFENMWMSHPSFKASFPAWWTMQVNG 120
            F    Q +  R T DH  ++L +   +WGP PFRFENMW+ HPSFK SF +WW      
Sbjct: 203 VFPQSLQGVLPRWTSDHWSIVLETNPFKWGPTPFRFENMWLQHPSFKESFGSWWREFQGN 262

Query: 121 KWEGYRLMGKLRGLKRILRSWNRMVFGDFRIRKQEIMGKIKVIDGLEEEESLNEEAKAER 180
            WEG++ M KL+ +K  L+ WN+  FG+   RK++I+  +   D LE+E  L+ E   +R
Sbjct: 263 GWEGHKFMRKLQFVKAKLKEWNKASFGELSKRKKDILSDLANFDSLEQEGGLSHELLVQR 322

Query: 181 IALKVEFVEVVRRETSSWR 197
              K E  E++ RE   WR
Sbjct: 323 ALRKGELEELILREEIHWR 341

[Close]

BLAST of Lcy12g005070 vs. ExPASy TrEMBL
Match: A0A5E4F090 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035017 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 7.0e-38
Identity = 81/198 (40.91%), Postives = 116/198 (58.59%), Query Frame = 0


Query: 2   EQGSGGRVTKSMRAFNEFIEGCCLVDPPLVNGKFTWANNRAQS---RIDRSLVSRGWMEY 61
           E+ + GRVTKSMR FN+FI+   L DP L+N  FTW+N R  +   R+DR LVS  W ++
Sbjct: 156 EKSNEGRVTKSMRDFNDFIQETNLRDPNLLNASFTWSNLRENAVCRRLDRFLVSGSWEDH 215

Query: 62  FGSIRQVLGHRVTLDHCPLILNSGICRWGPCPFRFENMWMSHPSFKASFPAWWTMQVNGK 121
           F   R     R+T DHCP+ L++   +WGP PFRFENMW+ HP FK     WW       
Sbjct: 216 FPHYRHKALPRITSDHCPIELDTSRVKWGPSPFRFENMWLKHPDFKRKIKLWWDEDQTPG 275

Query: 122 WEGYRLMGKLRGLKRILRSWNRMVFGDFRIRKQEIMGKIKVIDGLEEEESLNEEAKAERI 181
           WEGY+ M +L+ LK  L+ W++  FGD     +E   ++ V+D  E  E L+   ++ER 
Sbjct: 276 WEGYKFMSRLKMLKSKLKVWSKEEFGDVERDLREAEARLLVLDQREGTEGLDHLLRSERD 335

Query: 182 ALKVEFVEVVRRETSSWR 197
            L ++  ++ ++E   WR
Sbjct: 336 NLILKIGDLAQKEEVKWR 353

[Close]

BLAST of Lcy12g005070 vs. ExPASy TrEMBL
Match: A0A438IH50 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_461 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 82/198 (41.41%), Postives = 115/198 (58.08%), Query Frame = 0


Query: 2   EQGSGGRVTKSMRAFNEFIEGCCLVDPPLVNGKFTWAN---NRAQSRIDRSLVSRGWMEY 61
           E+  G R+T SM+ F++FI  C L+D PL +  FTW+N   N    R+DR L S  W + 
Sbjct: 649 EKLGGSRLTPSMKDFDDFIRDCELIDLPLRSASFTWSNMQENPVCKRLDRFLYSNEWEQA 708

Query: 62  FGSIRQVLGHRVTLDHCPLILNSGICRWGPCPFRFENMWMSHPSFKASFPAWWTMQVNGK 121
           +    Q +  R T DH P++L +   +WGP PFRFENMW+ HPSFK SF  WW       
Sbjct: 709 YPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKESFGRWWREFQGNG 768

Query: 122 WEGYRLMGKLRGLKRILRSWNRMVFGDFRIRKQEIMGKIKVIDGLEEEESLNEEAKAERI 181
           WEG++ M KL+ +K  L+ WN+  FG+   RK++I+  +   D LE+E  L+ E  A+R 
Sbjct: 769 WEGHKFMRKLQFVKAKLKEWNKASFGELSKRKKDILSDLVNFDSLEQEGGLSHELLAQRA 828

Query: 182 ALKVEFVEVVRRETSSWR 197
             K E  E++ RE   WR
Sbjct: 829 LRKGELEELILREEIHWR 846

[Close]

BLAST of Lcy12g005070 vs. ExPASy TrEMBL
Match: M5WJ76 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 82/198 (41.41%), Postives = 117/198 (59.09%), Query Frame = 0


Query: 2   EQGSGGRVTKSMRAFNEFIEGCCLVDPPLVNGKFTWANNRAQS---RIDRSLVSRGWMEY 61
           E+ + GRVTKSMR FN+FI+   L DP L+N  FTW+N R  +   R+DR LVS  W E+
Sbjct: 471 EKSNEGRVTKSMRDFNDFIQETNLRDPILLNASFTWSNLRENAVCRRLDRFLVSGSWEEH 530

Query: 62  FGSIRQVLGHRVTLDHCPLILNSGICRWGPCPFRFENMWMSHPSFKASFPAWWTMQVNGK 121
           F   R     R+T DHCP+ L++   +WGP PFRFENMW++HP FK     WW       
Sbjct: 531 FPHYRHKALPRITSDHCPIELDTSRVKWGPSPFRFENMWLNHPDFKRKIKLWWGEDQIPG 590

Query: 122 WEGYRLMGKLRGLKRILRSWNRMVFGDFRIRKQEIMGKIKVIDGLEEEESLNEEAKAERI 181
           WEGY+ M +L+ LK  L+ W++  FGD     +E   ++ V+D  E  E L+   ++ER 
Sbjct: 591 WEGYKFMTRLKMLKSKLKVWSKEEFGDVERDLREAEARLLVLDQREGTEGLDHLLRSERD 650

Query: 182 ALKVEFVEVVRRETSSWR 197
            L ++  ++ ++E   WR
Sbjct: 651 NLLLKIGDLAQKEEVKWR 668

[Close]

BLAST of Lcy12g005070 vs. NCBI nr
Match: RVX21247.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-37
Identity = 81/199 (40.70%), Postives = 115/199 (57.79%), Query Frame = 0


Query: 1   MEQGSGGRVTKSMRAFNEFIEGCCLVDPPLVNGKFTWAN---NRAQSRIDRSLVSRGWME 60
           +E+  G R+T SM+ F++FI  C L+D PL +  FTW+N   N    R+DR L S  W +
Sbjct: 143 LEKMGGSRLTPSMKDFDDFIRDCELIDSPLRSASFTWSNMQENPVCKRLDRFLYSNEWEQ 202

Query: 61  YFGSIRQVLGHRVTLDHCPLILNSGICRWGPCPFRFENMWMSHPSFKASFPAWWTMQVNG 120
            F    Q +  R T DH  ++L +   +WGP PFRFENMW+ HPSFK SF +WW      
Sbjct: 203 VFPQSLQGVLPRWTSDHWSIVLETNPFKWGPTPFRFENMWLQHPSFKESFGSWWREFQGN 262

Query: 121 KWEGYRLMGKLRGLKRILRSWNRMVFGDFRIRKQEIMGKIKVIDGLEEEESLNEEAKAER 180
            WEG++ M KL+ +K  L+ WN+  FG+   RK++I+  +   D LE+E  L+ E   +R
Sbjct: 263 GWEGHKFMRKLQFVKAKLKEWNKASFGELSKRKKDILSDLANFDSLEQEGGLSHELLVQR 322

Query: 181 IALKVEFVEVVRRETSSWR 197
              K E  E++ RE   WR
Sbjct: 323 ALRKGELEELILREEIHWR 341

[Close]

BLAST of Lcy12g005070 vs. NCBI nr
Match: VVA20479.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-37
Identity = 81/198 (40.91%), Postives = 116/198 (58.59%), Query Frame = 0


Query: 2   EQGSGGRVTKSMRAFNEFIEGCCLVDPPLVNGKFTWANNRAQS---RIDRSLVSRGWMEY 61
           E+ + GRVTKSMR FN+FI+   L DP L+N  FTW+N R  +   R+DR LVS  W ++
Sbjct: 156 EKSNEGRVTKSMRDFNDFIQETNLRDPNLLNASFTWSNLRENAVCRRLDRFLVSGSWEDH 215

Query: 62  FGSIRQVLGHRVTLDHCPLILNSGICRWGPCPFRFENMWMSHPSFKASFPAWWTMQVNGK 121
           F   R     R+T DHCP+ L++   +WGP PFRFENMW+ HP FK     WW       
Sbjct: 216 FPHYRHKALPRITSDHCPIELDTSRVKWGPSPFRFENMWLKHPDFKRKIKLWWDEDQTPG 275

Query: 122 WEGYRLMGKLRGLKRILRSWNRMVFGDFRIRKQEIMGKIKVIDGLEEEESLNEEAKAERI 181
           WEGY+ M +L+ LK  L+ W++  FGD     +E   ++ V+D  E  E L+   ++ER 
Sbjct: 276 WEGYKFMSRLKMLKSKLKVWSKEEFGDVERDLREAEARLLVLDQREGTEGLDHLLRSERD 335

Query: 182 ALKVEFVEVVRRETSSWR 197
            L ++  ++ ++E   WR
Sbjct: 336 NLILKIGDLAQKEEVKWR 353

[Close]

BLAST of Lcy12g005070 vs. NCBI nr
Match: RVW96070.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 166.4 bits (420), Expect = 2.5e-37
Identity = 82/198 (41.41%), Postives = 115/198 (58.08%), Query Frame = 0


Query: 2   EQGSGGRVTKSMRAFNEFIEGCCLVDPPLVNGKFTWAN---NRAQSRIDRSLVSRGWMEY 61
           E+  G R+T SM+ F++FI  C L+D PL +  FTW+N   N    R+DR L S  W + 
Sbjct: 649 EKLGGSRLTPSMKDFDDFIRDCELIDLPLRSASFTWSNMQENPVCKRLDRFLYSNEWEQA 708

Query: 62  FGSIRQVLGHRVTLDHCPLILNSGICRWGPCPFRFENMWMSHPSFKASFPAWWTMQVNGK 121
           +    Q +  R T DH P++L +   +WGP PFRFENMW+ HPSFK SF  WW       
Sbjct: 709 YPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKESFGRWWREFQGNG 768

Query: 122 WEGYRLMGKLRGLKRILRSWNRMVFGDFRIRKQEIMGKIKVIDGLEEEESLNEEAKAERI 181
           WEG++ M KL+ +K  L+ WN+  FG+   RK++I+  +   D LE+E  L+ E  A+R 
Sbjct: 769 WEGHKFMRKLQFVKAKLKEWNKASFGELSKRKKDILSDLVNFDSLEQEGGLSHELLAQRA 828

Query: 182 ALKVEFVEVVRRETSSWR 197
             K E  E++ RE   WR
Sbjct: 829 LRKGELEELILREEIHWR 846

[Close]

BLAST of Lcy12g005070 vs. NCBI nr
Match: RVX13544.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 166.0 bits (419), Expect = 3.2e-37
Identity = 82/198 (41.41%), Postives = 115/198 (58.08%), Query Frame = 0


Query: 2   EQGSGGRVTKSMRAFNEFIEGCCLVDPPLVNGKFTWAN---NRAQSRIDRSLVSRGWMEY 61
           E+  G R+T SM+ F++FI  C L+D PL +  FTW+N   N    R+DR L S  W + 
Sbjct: 475 EKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPVCKRLDRFLYSNEWEQT 534

Query: 62  FGSIRQVLGHRVTLDHCPLILNSGICRWGPCPFRFENMWMSHPSFKASFPAWWTMQVNGK 121
           F    Q +  R T DH P++L +   +WGP PFRFENMW+ HPSFK +F  WW       
Sbjct: 535 FPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWREFQGNG 594

Query: 122 WEGYRLMGKLRGLKRILRSWNRMVFGDFRIRKQEIMGKIKVIDGLEEEESLNEEAKAERI 181
           WEG++ M KL+ +K  L+ WN+  FG+   RK++I+  +   D LE+E  L+ E  A+R 
Sbjct: 595 WEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSALVNFDSLEQEGGLSHELLAQRA 654

Query: 182 ALKVEFVEVVRRETSSWR 197
             K E  E++ RE   WR
Sbjct: 655 IKKGELEELILREEIHWR 672

[Close]

BLAST of Lcy12g005070 vs. NCBI nr
Match: CAN65484.1 (hypothetical protein VITISV_029474 [Vitis vinifera])

HSP 1 Score: 166.0 bits (419), Expect = 3.2e-37
Identity = 82/198 (41.41%), Postives = 114/198 (57.58%), Query Frame = 0


Query: 2    EQGSGGRVTKSMRAFNEFIEGCCLVDPPLVNGKFTWAN---NRAQSRIDRSLVSRGWMEY 61
            E+  G R T SM+ F++FI  C L+D PL +  FTW+N   N    R+DR L S  W + 
Sbjct: 812  EKLGGSRXTPSMKXFDDFISDCELIDLPLRSASFTWSNMQVNXVCKRLDRFLYSNEWEQA 871

Query: 62   FGSIRQVLGHRVTLDHCPLILNSGICRWGPCPFRFENMWMSHPSFKASFPAWWTMQVNGK 121
            F    Q +  R T DH P++L +   +WGP PFRFENMW+ HPSFK +F  WW       
Sbjct: 872  FPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWREFQGNG 931

Query: 122  WEGYRLMGKLRGLKRILRSWNRMVFGDFRIRKQEIMGKIKVIDGLEEEESLNEEAKAERI 181
            WEG++ M KL+ +K  L+ WN+  FG+   RK++I+  +   D LE+E  L+ E  A+R 
Sbjct: 932  WEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSDLVNFDSLEQEGGLSHELLAQRA 991

Query: 182  ALKVEFVEVVRRETSSWR 197
              K E  E++ RE   WR
Sbjct: 992  LKKGELEELILREEIHWR 1009

The following BLAST results are available for this feature:

BLAST of Lcy12g005070 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g005070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5WPQ5	2.4e-38	42.42	Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU...	[more]
A0A438KJ67	7.0e-38	40.70	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A5E4F090	7.0e-38	40.91	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3...	[more]
A0A438IH50	1.2e-37	41.41	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
M5WJ76	1.2e-37	41.41	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]

BLAST of Lcy12g005070 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX21247.1	1.5e-37	40.70	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
VVA20479.1	1.5e-37	40.91	Hypothetical predicted protein, partial [Prunus dulcis]	[more]
RVW96070.1	2.5e-37	41.41	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVX13544.1	3.2e-37	41.41	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
CAN65484.1	3.2e-37	41.41	hypothetical protein VITISV_029474 [Vitis vinifera]	[more]

BLAST of Lcy12g005070 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 163..183
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 2..191
None	No IPR available	PANTHER	PTHR33710:SF28	SUBFAMILY NOT NAMED	coord: 2..191
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 2..80 e-value: 4.2E-9 score: 38.5
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 4..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g005070.1	Lcy12g005070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:0050789	regulation of biological process
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity