Lcy12g004650 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g004650
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr12: 17057881 .. 17059011 (-)
RNA-Seq Expression	Lcy12g004650
Synteny	Lcy12g004650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATGGCATTATGACAAGTCGGGTCTTTTCTCAGTTAAGAACGGGTATCGGTTAGGCCAATCGACTTGGATTTCACAGCTCTCATCTTCCTCTTCTGACGATTCGATTATGGGTTGGTGGAAGGGGTGTTGGAAAATGGGGATTCCGAATAAGGTAAAGATCTTCTTATGGAGACTATGTTTAGATCGCCTGCCTACAGTTGATAATCTGGTTTATTGGGGTATGGATGTGTTGAATATGTGTGGTCTTTGTGGCCGGCATGGTGAATCAAGCCTACATGTCTTTTGGCATTGTAAGTTTGTCAAAAGGGTTCTGATGGACTCTGAGTTTGGGATCTTGGTAAACCCTGTGCAGGTAGGGACTATATTCGATCTCCTTAGAGATGTGAGGGATAAGGTGGGATGGGGAAAATTTGAGCTGTTTGTGGTGGTGCTGTGGGCGGTGTGGAGCTGTCGCAACCAGCAAAAATTCAAGGGGATTGGGTCTGTGGAGGGACTAGTGGATTGGGCGGGGAGTTACATCTCTTCGTTCCAGCAGGCTACCTTGTCTAGTGGGTTGTGTGGGCATAGGGGGATTACAAGGGAAGAGGTAAGATGGAGCCCCCCGGATACTGGATGGTATAAGGTGAACGTTGATACAGCCTTCCGAAGGGAAGGAGGGCAGGCGGGTTTGGGGGTGGTTGTTCGGGATTCTGTCGGGCGGGTTATGTTGTCGGTGTCATTGGTGCAGCAGCACGTACGAAGCCCAGAGATGGTCGAAGGTTGGGCAGCTGTGAAGGGCATGAGACTGGCTTTGGAGATGGGTTTGTTCCTGCTGGTGCTGGAGACCAACTCTAGTCGAGTGGCTAGTGTTTTTCAGAATGAGGCAATGGATGACTACTATGATTTAGGTGCAAGGAGCTTCCGAGGTCTTCCTCTGTCTGCTGTACGTTTACCCGGAGAGAGGGAAATGGAGTGGCCCATCATTTGGCTTGTTGGGCGTTGAGAGAGGAAGAATCTAGGGTGTGGATGGAATCTGTACCTCAGTGTGTGGAGGCTTTGGTCTTTTCTGATATGGTTTTGGTGTAATTTTTTGCAGATGGCGATAGATCTTGGACGAGTCATGGTCAAGAATGGGAAAGAAATCTAA

mRNA sequence

ATGGTATGGCATTATGACAAGTCGGGTCTTTTCTCAGTTAAGAACGGGTATCGGTTAGGCCAATCGACTTGGATTTCACAGCTCTCATCTTCCTCTTCTGACGATTCGATTATGGGTTGGTGGAAGGGGTGTTGGAAAATGGGGATTCCGAATAAGGTAAAGATCTTCTTATGGAGACTATGTTTAGATCGCCTGCCTACAGTTGATAATCTGGTTTATTGGGGTATGGATGTGTTGAATATGTGTGGTCTTTGTGGCCGGCATGGTGAATCAAGCCTACATGTCTTTTGGCATTGTAAGTTTGTCAAAAGGGTTCTGATGGACTCTGAGTTTGGGATCTTGGTAAACCCTGTGCAGGTAGGGACTATATTCGATCTCCTTAGAGATGTGAGGGATAAGGTGGGATGGGGAAAATTTGAGCTGTTTGTGGTGGTGCTGTGGGCGGTGTGGAGCTGTCGCAACCAGCAAAAATTCAAGGGGATTGGGTCTGTGGAGGGACTAGTGGATTGGGCGGGGAGTTACATCTCTTCGTTCCAGCAGGCTACCTTGTCTAGTGGGTTGTGTGGGCATAGGGGGATTACAAGGGAAGAGGTAAGATGGAGCCCCCCGGATACTGGATGGTATAAGGTGAACGTTGATACAGCCTTCCGAAGGGAAGGAGGGCAGGCGGGTTTGGGGGTGGTTGTTCGGGATTCTGTCGGGCGGGTTATGTTGTCGGTGTCATTGGTGCAGCAGCACGTACGAAGCCCAGAGATGGTCGAAGGTTGGGCAGCTGTGAAGGGCATGAGACTGGCTTTGGAGATGGGTTTGTTCCTGCTGGTGCTGGAGACCAACTCTAGTCGAGTGGCTAGTGTTTTTCAGAATGAGGCAATGGATGACTACTATGATTTAGGTGCAAGGAGCTTCCGAGGTCTTCCTCTGTCTGCTATGGCGATAGATCTTGGACGAGTCATGGTCAAGAATGGGAAAGAAATCTAA

Coding sequence (CDS)

ATGGTATGGCATTATGACAAGTCGGGTCTTTTCTCAGTTAAGAACGGGTATCGGTTAGGCCAATCGACTTGGATTTCACAGCTCTCATCTTCCTCTTCTGACGATTCGATTATGGGTTGGTGGAAGGGGTGTTGGAAAATGGGGATTCCGAATAAGGTAAAGATCTTCTTATGGAGACTATGTTTAGATCGCCTGCCTACAGTTGATAATCTGGTTTATTGGGGTATGGATGTGTTGAATATGTGTGGTCTTTGTGGCCGGCATGGTGAATCAAGCCTACATGTCTTTTGGCATTGTAAGTTTGTCAAAAGGGTTCTGATGGACTCTGAGTTTGGGATCTTGGTAAACCCTGTGCAGGTAGGGACTATATTCGATCTCCTTAGAGATGTGAGGGATAAGGTGGGATGGGGAAAATTTGAGCTGTTTGTGGTGGTGCTGTGGGCGGTGTGGAGCTGTCGCAACCAGCAAAAATTCAAGGGGATTGGGTCTGTGGAGGGACTAGTGGATTGGGCGGGGAGTTACATCTCTTCGTTCCAGCAGGCTACCTTGTCTAGTGGGTTGTGTGGGCATAGGGGGATTACAAGGGAAGAGGTAAGATGGAGCCCCCCGGATACTGGATGGTATAAGGTGAACGTTGATACAGCCTTCCGAAGGGAAGGAGGGCAGGCGGGTTTGGGGGTGGTTGTTCGGGATTCTGTCGGGCGGGTTATGTTGTCGGTGTCATTGGTGCAGCAGCACGTACGAAGCCCAGAGATGGTCGAAGGTTGGGCAGCTGTGAAGGGCATGAGACTGGCTTTGGAGATGGGTTTGTTCCTGCTGGTGCTGGAGACCAACTCTAGTCGAGTGGCTAGTGTTTTTCAGAATGAGGCAATGGATGACTACTATGATTTAGGTGCAAGGAGCTTCCGAGGTCTTCCTCTGTCTGCTATGGCGATAGATCTTGGACGAGTCATGGTCAAGAATGGGAAAGAAATCTAA

Protein sequence

MVWHYDKSGLFSVKNGYRLGQSTWISQLSSSSSDDSIMGWWKGCWKMGIPNKVKIFLWRLCLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFWHCKFVKRVLMDSEFGILVNPVQVGTIFDLLRDVRDKVGWGKFELFVVVLWAVWSCRNQQKFKGIGSVEGLVDWAGSYISSFQQATLSSGLCGHRGITREEVRWSPPDTGWYKVNVDTAFRREGGQAGLGVVVRDSVGRVMLSVSLVQQHVRSPEMVEGWAAVKGMRLALEMGLFLLVLETNSSRVASVFQNEAMDDYYDLGARSFRGLPLSAMAIDLGRVMVKNGKEI

Homology

[Close]

BLAST of Lcy12g004650 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.2e-54
Identity = 109/276 (39.49%), Postives = 172/276 (62.32%), Query Frame = 0


Query: 1    MVWHYDKSGLFSVKNGYRLG-QSTWISQLSSSSSDDSIMGWWKGCWKMGIPNKVKIFLWR 60
            ++W+Y+K+G++SV++GY++   +    Q  SSSS + +  WW G WKM IPNK+K+FLWR
Sbjct: 795  LIWNYEKTGVYSVRSGYKVALLNNPCVQAPSSSSSEEVRCWWNGFWKMHIPNKIKVFLWR 854

Query: 61   LCLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFWHCKFVKRVLMDSEFGILVNPVQ 120
            LCLDRLPT  NL   G+++ N C  CGR+GE S+H+FW CKF + + ++S+FG L     
Sbjct: 855  LCLDRLPTGCNLSKRGVEITNCCYFCGRNGEDSIHLFWICKFAEALWINSKFGKL----- 914

Query: 121  VGTIFDLLRDVRDKVGWGKFELFVVVLWAVWSCRNQQKF----KGIGSV-EGLVDWAGSY 180
              + F +LR+  + +    FE   VV+W +W+ RN + F    K +  +   LV+WA  Y
Sbjct: 915  --SPFLILRESHESLSKADFEELCVVIWGLWNQRNARAFNDSTKTVFKIGMELVEWANKY 974

Query: 181  ISSFQQATLSSGLCGHRGITREEVRWSPPDTGWYKVNVDTAFRREGGQAGLGVVVRDSVG 240
               F++A  S+ + G R     E+ W PPD G YK+N D +F      AGLG+++ +  G
Sbjct: 975  AMEFREAK-SNPITG-RVTNTAEILWQPPDEGIYKINTDASFLASDQHAGLGIIIHNDRG 1034

Query: 241  RVMLSVSLVQQHVRSPEMVEGWAAVKGMRLALEMGL 271
            +VM + +   ++++S +M E  AAV+G++LA E+G+
Sbjct: 1035 QVMAAATKYLENIQSVDMAEAIAAVEGLQLASEIGM 1061

[Close]

BLAST of Lcy12g004650 vs. ExPASy TrEMBL
Match: A0A5C7IG10 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_009199 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.6e-37
Identity = 95/302 (31.46%), Postives = 154/302 (50.99%), Query Frame = 0


Query: 1   MVWHYDKSGLFSVKNGYRLGQSTWISQLSSSSSDDSIMGWWKGCWKMGIPNKVKIFLWRL 60
           ++WH+DKSG +SV++GY+L +    S  +  S D   + WWK  W + IP KV +F+W+ 
Sbjct: 95  LLWHFDKSGNYSVRSGYKLKKLIQSSVETFGSFD---VDWWKSIWCLKIPLKVSVFVWKA 154

Query: 61  CLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFWHCKFVKRVLMDSEFGILVNPVQV 120
           C + LPT+ NL   G+    +C  C +  E+++H  W C ++++   +  F + +    +
Sbjct: 155 CRNWLPTLFNLERRGVHTRGLCPYCSKRPETTVHTLWGCDWIRKSRSNCSFLVGLKWNDI 214

Query: 121 GTIFDLLRDVRDKVGWGKFELFVVVLWAVWSCRNQQKFKGIG-SVEGLVDWAGSYISSFQ 180
               DL       +   + E   VV W +W  RNQ+        VE +  WA +++  F+
Sbjct: 215 MNFHDLFIYAGHVLYSKELECLCVVWWRIWFWRNQKIHTSSNFRVEHIFAWASNFLDKFR 274

Query: 181 QATLSSGLCGHRGITREE--VRWSPPDTGWYKVNVDTAFRREGGQAGLGVVVRDSVGRVM 240
            A++S     H      +  V+W+PP TG +K+N D A R +    G+G+VV+DS GRV 
Sbjct: 275 GASVSRPPISHSSSVSPDSVVKWAPPPTGSFKINSDAAVRVDSQLIGVGIVVKDSCGRVC 334

Query: 241 LSVSLVQQHVRSPEMVEGWAAVKGMRLALEMGLFLLVLETNSSRVASVFQNEAMDDYYDL 300
            S         SP +VE  A   G+RLA +  L   VLE+++  V  +  N   D   D+
Sbjct: 335 ASSVNRINACSSPSVVEAIAIRNGIRLAGDTDLLPAVLESDAKWVVDLI-NSNDDICADI 392

[Close]

BLAST of Lcy12g004650 vs. ExPASy TrEMBL
Match: A0A803Q3X2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-34
Identity = 85/291 (29.21%), Postives = 145/291 (49.83%), Query Frame = 0


Query: 1   MVWHYDKSGLFSVKNGYRLGQSTWISQLSSSSSDDSIMGWWKGCWKMGIPNKVKIFLWRL 60
           ++WHY K+G ++VK+GY++  S    Q    S+D  ++ W K  W+  IP K+K F+W+L
Sbjct: 239 IMWHYSKNGEYTVKSGYKMASSLVDEQY--QSNDKVLVDWLKALWRFKIPPKIKHFVWKL 298

Query: 61  CLDRLPTVDNLVYWGMDVLNMCGLCGRH-GESSLHVFWHCKFVKRVLMDSEFGILVNPVQ 120
             + +PT   L   G+ V   C  C  H  E+++H  W CK  K   + S     +  ++
Sbjct: 299 AYNWIPTNVTLAKRGVAVNKKCERCTSHVEETAIHALWECKRSKEFKVVSGLKDEMKRLK 358

Query: 121 VGTIFDLLRDVRDKVGWGKFELFVVVLWAVWSCRNQQKFKGIGSVEG-LVDWAGSYISSF 180
              +   L  +  +    KFE F+V+ W +W+ RN     G   + G +VDW  +Y++ F
Sbjct: 359 GEDVLSFLMRMARQWDKDKFEFFLVLTWNIWNVRNNVIHGGTAPMAGEMVDWCRTYLTEF 418

Query: 181 QQATLSSGLCGHRGITREEVRWSPPDTGWYKVNVDTAFRREGGQAGLGVVVRDSVGRVML 240
           Q      G      +  E  +W  PD G  K+NVD   +  GG +G+G VVR+S GR + 
Sbjct: 419 Q----GGGAAAMSRVRSENSKWGAPDLGQMKINVDARVKSGGGVSGIGCVVRESGGRSLY 478

Query: 241 SVSLVQQHVRSPEMVEGWAAVKGMRLALEMGLFLLVLETNSSRVASVFQNE 290
           + S V     +P  +E  A + G+++ ++  +    +E+N  +   + Q +
Sbjct: 479 ASSTVVNREIAPLQLELQAILLGLQVGIQRKIHRFSIESNYLQAIQLIQRK 523

[Close]

BLAST of Lcy12g004650 vs. ExPASy TrEMBL
Match: A0A5C7H0P0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.8e-34
Identity = 86/321 (26.79%), Postives = 153/321 (47.66%), Query Frame = 0


Query: 1   MVWHYDKSGLFSVKNGYRLGQSTWISQLSSSSSDDSIMGWWKGCWKMGIPNKVKIFLWRL 60
           + WH+DK G ++V++GY++       +    SS   +  WW+  WK  IPNK KIF W+ 
Sbjct: 80  LCWHFDKRGFYTVRSGYKVALDL---KKGIGSSSMQLSPWWRFLWKCNIPNKCKIFFWKA 139

Query: 61  CLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFWHCKFVKRVLMDSEFGILVNPVQV 120
               LPT   L    +DV++ C +C    ES  H+ W C     V        ++  + V
Sbjct: 140 FNGWLPTFATLARRRVDVVDYCQVCNDDSESITHILWSCNSAVEVWRQLLGDDVIQRIVV 199

Query: 121 GTIFDLLRDVRDKVGWGKFELFVVVLWAVWSCRNQQKFKGIG-SVEGLVDWAGSYISSFQ 180
                ++  +   V    F L ++  W +W+ RN       G +   +V W  ++ + F+
Sbjct: 200 SDFPSIILSLWRSVDSVVFNLLIIGYWRLWTNRNSVVHGSAGWAAADMVTWIDNFANEFR 259

Query: 181 QATLSSGLCGHRGITREEVRWSPPDTGWYKVNVDTAFRREGGQAGLGVVVRDSVGRVMLS 240
            A        H+ +   +  W  P  G +K+N D +F+   G+AG+GV++RD  G  + +
Sbjct: 260 LA----NELNHKEVLSHQPSWKTPKRGEFKINCDASFQLRSGKAGVGVIIRDYKGSAIAA 319

Query: 241 VSLVQQHVRSPEMVEGWAAVKGMRLALEMGLFLLVLETNSSRVASVFQNEAMDDYYDLGA 300
            S       S EM+E  A ++G+ LA+++G+  +++E++++ V  +  ++ +    +LGA
Sbjct: 320 RSSPVLCCSSVEMLEAQACLEGIHLAIDIGVSGVIIESDAASVIQLLSDQTV-PRTELGA 379

Query: 301 RSFRGLPLSAMAIDLGRVMVK 321
                L L A    L  V V+
Sbjct: 380 IIHTSLALGASVNLLSYVAVR 392

[Close]

BLAST of Lcy12g004650 vs. ExPASy TrEMBL
Match: A0A2U1KHJ0 (CCHC-type domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA602590 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.0e-33
Identity = 85/291 (29.21%), Postives = 145/291 (49.83%), Query Frame = 0


Query: 1    MVWHYDKSGLFSVKNGYRLGQSTWISQLSSSSSDDSIMGWWKGCWKMGIPNKVKIFLWRL 60
            + WH +  G FS K+ Y L        + +++  +S++ +W+  WK  +P+KVK+F+WR 
Sbjct: 746  LYWHNNPGGRFSCKSAYLLALEADEDMVRTTTISNSLIDFWRVVWKARVPSKVKLFMWRA 805

Query: 61   CLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFWHCKFVKRVLMDSEFGILVNPVQV 120
              + +PT+DNL   G++  + C  CG+  E+ +HV + C   K V     FG   +    
Sbjct: 806  WNNYVPTIDNLKSRGLNPTSSCTHCGQTSENLVHVLFKCSVAKDVWNRCNFGCFYDTQGA 865

Query: 121  GTIFDLLRDVRDKVGWGKFELFVVVLWAVWSCRNQQKFKGIGSVEGLVD-WAGSYISSFQ 180
             T  D  + + +K    ++E F+++LW +W+ RN+     +   EG V+  A S +S + 
Sbjct: 866  ITFQDFCQVILEKF-LAEWETFMMILWGLWTRRNRHFHGQLNGREGNVEVIAKSVLSDYH 925

Query: 181  QATLSSGLCGHRGITREEV-RWSPPDTGWYKVNVDTAFRREGGQAGLGVVVRDSVGRVML 240
            +A     + G+ G+       W  PD    K+N D A+++E G+AGLG V R+  G V+ 
Sbjct: 926  KANQRENISGNSGVHNIHAGMWLRPDVEHIKINCDAAWQKESGKAGLGFVARNYKGEVLF 985

Query: 241  SVSLVQQHVRSPEMVEGWAAVKGMRLALEMGLFLLVLETNSSRVASVFQNE 290
            S    + +  SP   E  A    M   +  G   ++ ETNS  +    QN+
Sbjct: 986  SGGRSECYASSPLEAEAKAVHWAMTRVICKGYSHVIFETNSLCLVKALQNK 1035

[Close]

BLAST of Lcy12g004650 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-53
Identity = 109/276 (39.49%), Postives = 172/276 (62.32%), Query Frame = 0


Query: 1    MVWHYDKSGLFSVKNGYRLG-QSTWISQLSSSSSDDSIMGWWKGCWKMGIPNKVKIFLWR 60
            ++W+Y+K+G++SV++GY++   +    Q  SSSS + +  WW G WKM IPNK+K+FLWR
Sbjct: 795  LIWNYEKTGVYSVRSGYKVALLNNPCVQAPSSSSSEEVRCWWNGFWKMHIPNKIKVFLWR 854

Query: 61   LCLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFWHCKFVKRVLMDSEFGILVNPVQ 120
            LCLDRLPT  NL   G+++ N C  CGR+GE S+H+FW CKF + + ++S+FG L     
Sbjct: 855  LCLDRLPTGCNLSKRGVEITNCCYFCGRNGEDSIHLFWICKFAEALWINSKFGKL----- 914

Query: 121  VGTIFDLLRDVRDKVGWGKFELFVVVLWAVWSCRNQQKF----KGIGSV-EGLVDWAGSY 180
              + F +LR+  + +    FE   VV+W +W+ RN + F    K +  +   LV+WA  Y
Sbjct: 915  --SPFLILRESHESLSKADFEELCVVIWGLWNQRNARAFNDSTKTVFKIGMELVEWANKY 974

Query: 181  ISSFQQATLSSGLCGHRGITREEVRWSPPDTGWYKVNVDTAFRREGGQAGLGVVVRDSVG 240
               F++A  S+ + G R     E+ W PPD G YK+N D +F      AGLG+++ +  G
Sbjct: 975  AMEFREAK-SNPITG-RVTNTAEILWQPPDEGIYKINTDASFLASDQHAGLGIIIHNDRG 1034

Query: 241  RVMLSVSLVQQHVRSPEMVEGWAAVKGMRLALEMGL 271
            +VM + +   ++++S +M E  AAV+G++LA E+G+
Sbjct: 1035 QVMAAATKYLENIQSVDMAEAIAAVEGLQLASEIGM 1061

[Close]

BLAST of Lcy12g004650 vs. NCBI nr
Match: TXG67924.1 (hypothetical protein EZV62_009199 [Acer yangbiense])

HSP 1 Score: 166.0 bits (419), Expect = 5.4e-37
Identity = 95/302 (31.46%), Postives = 154/302 (50.99%), Query Frame = 0


Query: 1   MVWHYDKSGLFSVKNGYRLGQSTWISQLSSSSSDDSIMGWWKGCWKMGIPNKVKIFLWRL 60
           ++WH+DKSG +SV++GY+L +    S  +  S D   + WWK  W + IP KV +F+W+ 
Sbjct: 95  LLWHFDKSGNYSVRSGYKLKKLIQSSVETFGSFD---VDWWKSIWCLKIPLKVSVFVWKA 154

Query: 61  CLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFWHCKFVKRVLMDSEFGILVNPVQV 120
           C + LPT+ NL   G+    +C  C +  E+++H  W C ++++   +  F + +    +
Sbjct: 155 CRNWLPTLFNLERRGVHTRGLCPYCSKRPETTVHTLWGCDWIRKSRSNCSFLVGLKWNDI 214

Query: 121 GTIFDLLRDVRDKVGWGKFELFVVVLWAVWSCRNQQKFKGIG-SVEGLVDWAGSYISSFQ 180
               DL       +   + E   VV W +W  RNQ+        VE +  WA +++  F+
Sbjct: 215 MNFHDLFIYAGHVLYSKELECLCVVWWRIWFWRNQKIHTSSNFRVEHIFAWASNFLDKFR 274

Query: 181 QATLSSGLCGHRGITREE--VRWSPPDTGWYKVNVDTAFRREGGQAGLGVVVRDSVGRVM 240
            A++S     H      +  V+W+PP TG +K+N D A R +    G+G+VV+DS GRV 
Sbjct: 275 GASVSRPPISHSSSVSPDSVVKWAPPPTGSFKINSDAAVRVDSQLIGVGIVVKDSCGRVC 334

Query: 241 LSVSLVQQHVRSPEMVEGWAAVKGMRLALEMGLFLLVLETNSSRVASVFQNEAMDDYYDL 300
            S         SP +VE  A   G+RLA +  L   VLE+++  V  +  N   D   D+
Sbjct: 335 ASSVNRINACSSPSVVEAIAIRNGIRLAGDTDLLPAVLESDAKWVVDLI-NSNDDICADI 392

[Close]

BLAST of Lcy12g004650 vs. NCBI nr
Match: KAF8408042.1 (hypothetical protein HHK36_007182 [Tetracentron sinense])

HSP 1 Score: 156.4 bits (394), Expect = 4.3e-34
Identity = 94/310 (30.32%), Postives = 156/310 (50.32%), Query Frame = 0


Query: 2   VWHYDKSGLFSVKNGYRLGQSTWISQLSSSSSDDSIMGW--------WKGCWKMGIPNKV 61
           VWH+   G FSV++ Y L  ST   + S++SS  S + W        W   W++ IP KV
Sbjct: 326 VWHFTSKG-FSVRSAYHL-TSTLRDRESATSSSTSSLSWNGSLSGIKWSQVWQLAIPPKV 385

Query: 62  KIFLWRLCLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFWHCKFVKRVLMDSEFGI 121
           KIF+W++ L+ LP   NL    + V N+CG+CG  GE+ LHV  +C + ++V + S+ G+
Sbjct: 386 KIFIWKVALNILPVRANLCKRKIPVENVCGVCGEEGETILHVLKNCHYARQVWLLSQLGL 445

Query: 122 LVNPVQVGTIFDLLRDVRDKVGWGKFELFVVVLWAVWSCRNQQKFKGIGSVE-GLVDWAG 181
             +     ++   + ++    G      F ++ W++W  RN+  F G+       V  A 
Sbjct: 446 RSDATSADSLSSWVEEIMKSHGEEGLSAFFMIAWSIWKHRNEYIFSGVKMTPFNCVQRAN 505

Query: 182 SYISSFQQATLSSGLCGHRGITREEVRWSPPDTGWYKVNVDTAFRREGGQAGLGVVVRDS 241
             ++ F  A   +       I+     W  P    +KVN+D A   E   AG+GVVVRD 
Sbjct: 506 KLLADFHNA---NDRAAPESISAAR-SWLAPPGDLFKVNIDGALHLEDRSAGVGVVVRDH 565

Query: 242 VGRVMLSVSLVQQHVRSPEMVEGWAAVKGMRLALEMGLFLLVLETNSSRVA--------- 294
            G ++ ++S    + +S  ++E  AA +G++ ALE+G+  ++LE++S             
Sbjct: 566 NGDLIAAMSKRISNTQSAAVIEAIAAREGLKFALELGIQEVILESDSVNTIRALTSQEEN 625

[Close]

BLAST of Lcy12g004650 vs. NCBI nr
Match: TXG50387.1 (hypothetical protein EZV62_022911 [Acer yangbiense])

HSP 1 Score: 154.5 bits (389), Expect = 1.6e-33
Identity = 86/321 (26.79%), Postives = 153/321 (47.66%), Query Frame = 0


Query: 1   MVWHYDKSGLFSVKNGYRLGQSTWISQLSSSSSDDSIMGWWKGCWKMGIPNKVKIFLWRL 60
           + WH+DK G ++V++GY++       +    SS   +  WW+  WK  IPNK KIF W+ 
Sbjct: 80  LCWHFDKRGFYTVRSGYKVALDL---KKGIGSSSMQLSPWWRFLWKCNIPNKCKIFFWKA 139

Query: 61  CLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFWHCKFVKRVLMDSEFGILVNPVQV 120
               LPT   L    +DV++ C +C    ES  H+ W C     V        ++  + V
Sbjct: 140 FNGWLPTFATLARRRVDVVDYCQVCNDDSESITHILWSCNSAVEVWRQLLGDDVIQRIVV 199

Query: 121 GTIFDLLRDVRDKVGWGKFELFVVVLWAVWSCRNQQKFKGIG-SVEGLVDWAGSYISSFQ 180
                ++  +   V    F L ++  W +W+ RN       G +   +V W  ++ + F+
Sbjct: 200 SDFPSIILSLWRSVDSVVFNLLIIGYWRLWTNRNSVVHGSAGWAAADMVTWIDNFANEFR 259

Query: 181 QATLSSGLCGHRGITREEVRWSPPDTGWYKVNVDTAFRREGGQAGLGVVVRDSVGRVMLS 240
            A        H+ +   +  W  P  G +K+N D +F+   G+AG+GV++RD  G  + +
Sbjct: 260 LA----NELNHKEVLSHQPSWKTPKRGEFKINCDASFQLRSGKAGVGVIIRDYKGSAIAA 319

Query: 241 VSLVQQHVRSPEMVEGWAAVKGMRLALEMGLFLLVLETNSSRVASVFQNEAMDDYYDLGA 300
            S       S EM+E  A ++G+ LA+++G+  +++E++++ V  +  ++ +    +LGA
Sbjct: 320 RSSPVLCCSSVEMLEAQACLEGIHLAIDIGVSGVIIESDAASVIQLLSDQTV-PRTELGA 379

Query: 301 RSFRGLPLSAMAIDLGRVMVK 321
                L L A    L  V V+
Sbjct: 380 IIHTSLALGASVNLLSYVAVR 392

[Close]

BLAST of Lcy12g004650 vs. NCBI nr
Match: XP_042965942.1 (uncharacterized protein LOC122299620 [Carya illinoinensis])

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-33
Identity = 94/301 (31.23%), Postives = 157/301 (52.16%), Query Frame = 0


Query: 2    VWHYDKSGLFSVKNGYRLGQSTWISQLSSSSSDDSIMGWWKGCWKMGIPNKVKIFLWRLC 61
            +W  ++SG FSV++ Y+L Q      +  SS+  S+   WK  WKM +P K++IF W+LC
Sbjct: 1014 MWSEERSGEFSVRSAYKLLQKGLYDAVGQSSNSSSLNSLWKAIWKMKLPLKIRIFAWKLC 1073

Query: 62   LDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFWHCKFVKRVLMDSEFGIL--VNPVQ 121
             D LPT  NL+   +D+   C LC    E   H   +C      L++   G L  +  +Q
Sbjct: 1074 KDCLPTGLNLIKRHVDIDPKCCLCAEQNEDLSHAIVYCP----QLIEFWKGQLPKLFDIQ 1133

Query: 122  VGTIF-DLLRDVRDKVGWGKFELFVVVLWAVWSCRNQQKFK-GIGSVEGLVDWAGSYISS 181
               +F DL+  V +K    + + F ++ W+ W  RN++     +  ++ +VD A S  SS
Sbjct: 1134 KPILFIDLINHVHNKGTTEELQFFCLIAWSFWYRRNRKIHDLVVLPIKQVVDHALSVQSS 1193

Query: 182  FQQATLSSGLCGHRGITREEVRWSPPDTGWYKVNVDTAFRREGGQAGLGVVVRDSVGRVM 241
            F    +S     +    +    WSPP  G+ K+NVD A   +  +AG+G V+RD  G V+
Sbjct: 1194 F----VSCSQQKNPDHIKLNGLWSPPPEGFLKLNVDGALFFDQKKAGIGAVLRDGRGEVI 1253

Query: 242  LSVSLVQQHVRSPEMVEGWAAVKGMRLALEMGLFLLVLETNSSRVASVFQNEAMDDYYDL 299
            L+ S ++ ++  PE +E  A ++G++L ++ G+  LV+E++   +  + Q E   D   L
Sbjct: 1254 LAASKMECYIEEPETIELVAILRGLQLCIQSGISKLVVESDCKLLVEILQQEPQQDASQL 1306

[Close]

BLAST of Lcy12g004650 vs. TAIR 10
Match: AT1G33710.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 55.5 bits (132), Expect = 9.5e-08
Identity = 25/65 (38.46%), Postives = 31/65 (47.69%), Query Frame = 0


Query: 37  IMGWWKGCWKMGIPNKVKIFLWRLCLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVF 96
           ++ W K  W  G   K    +W   LDRLPT   L  WGM +   CGLC    E   H+F
Sbjct: 45  VVSWAKTVWFKGATPKHAFHMWVTNLDRLPTKTRLASWGMQLQTTCGLCSLDIEDRDHLF 104

Query: 97  WHCKF 102
             C+F
Sbjct: 105 LTCEF 109

[Close]

BLAST of Lcy12g004650 vs. TAIR 10
Match: AT5G16486.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 50.4 bits (119), Expect = 3.1e-06
Identity = 23/66 (34.85%), Postives = 31/66 (46.97%), Query Frame = 0


Query: 40  WWKGCWKMGIPNKVKIFLWRLCLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFWHC 99
           W K  W  G   K     W     RLPT D L+ WG+ V ++C LC    E+  H+F+ C
Sbjct: 144 WHKAIWFKGRIPKHAFISWVNIRHRLPTRDKLLSWGLHVPSLCLLCNAFDETRQHLFFDC 203

Query: 100 KFVKRV 106
            F   +
Sbjct: 204 VFAGEI 209

[Close]

BLAST of Lcy12g004650 vs. TAIR 10
Match: AT5G18880.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.6e-05
Identity = 21/62 (33.87%), Postives = 30/62 (48.39%), Query Frame = 0


Query: 40  WWKGCWKMGIPNKVKIFLWRLCLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFWHC 99
           W K  W      +  +  W   L+RLPT D L  WGM++ +   LC    E+  H+F+ C
Sbjct: 127 WAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFEC 186

Query: 100 KF 102
            F
Sbjct: 187 SF 188

[Close]

BLAST of Lcy12g004650 vs. TAIR 10
Match: AT1G60720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 45.4 bits (106), Expect = 9.9e-05
Identity = 24/68 (35.29%), Postives = 30/68 (44.12%), Query Frame = 0


Query: 38  MGWWKGCWKMGIPNKVKIFLWRLCLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFW 97
           + W K  W  G   K    +W   LDRLPT   L  WG      C LC    ES  H+ +
Sbjct: 125 LDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLF 184

Query: 98  HCKFVKRV 106
            C+F  +V
Sbjct: 185 SCEFAAQV 192

[Close]

BLAST of Lcy12g004650 vs. TAIR 10
Match: AT4G10613.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 45.4 bits (106), Expect = 9.9e-05
Identity = 21/63 (33.33%), Postives = 32/63 (50.79%), Query Frame = 0


Query: 57  LWRLCLDRLPTVDNLVYWGMDVLNMCGLCGRHGESSLHVFWHCKFVKRVLMDSEFGILVN 116
           +W   LDRLPT   LV WG+ +  +C LC +  E+  H+   C F   +    +  + + 
Sbjct: 1   MWISNLDRLPTRARLVSWGLQISPLCCLCSQSVETRDHLILTCGFSSSIWNMVQARLRLQ 60

Query: 117 PVQ 120
           PVQ
Sbjct: 61  PVQ 63

The following BLAST results are available for this feature:

BLAST of Lcy12g004650 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g004650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAR4	5.2e-54	39.49	uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A5C7IG10	2.6e-37	31.46	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_009199 PE=4 SV=1	[more]
A0A803Q3X2	1.6e-34	29.21	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A5C7H0P0	7.8e-34	26.79	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1	[more]
A0A2U1KHJ0	3.0e-33	29.21	CCHC-type domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA60259...	[more]

BLAST of Lcy12g004650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150918.1	1.1e-53	39.49	uncharacterized protein LOC111018954 [Momordica charantia]	[more]
TXG67924.1	5.4e-37	31.46	hypothetical protein EZV62_009199 [Acer yangbiense]	[more]
KAF8408042.1	4.3e-34	30.32	hypothetical protein HHK36_007182 [Tetracentron sinense]	[more]
TXG50387.1	1.6e-33	26.79	hypothetical protein EZV62_022911 [Acer yangbiense]	[more]
XP_042965942.1	2.1e-33	31.23	uncharacterized protein LOC122299620 [Carya illinoinensis]	[more]

BLAST of Lcy12g004650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33710.1	9.5e-08	38.46	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT5G16486.1	3.1e-06	34.85	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT5G18880.1	2.6e-05	33.87	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT1G60720.1	9.9e-05	35.29	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G10613.1	9.9e-05	33.33	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 211..290 e-value: 4.4E-12 score: 45.9
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 30..104 e-value: 1.4E-18 score: 67.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 207..302 e-value: 4.0E-7 score: 32.1
None	No IPR available	PANTHER	PTHR46736	FAMILY NOT NAMED	coord: 2..287
None	No IPR available	PANTHER	PTHR46736:SF6	SUBFAMILY NOT NAMED	coord: 2..287
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 210..288 e-value: 2.15866E-8 score: 50.0052
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 205..291

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g004650.1	Lcy12g004650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity