Lcy12g004500 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g004500
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationChr12: 16394892 .. 16395233 (-)
RNA-Seq ExpressionLcy12g004500
SyntenyLcy12g004500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCATTGTGCATGTATGGTGGATCTGCTGGGACGTGCAGGAAGTTTACATCAGGCATGGGAATTCGTTATGCAAATGCCTGAGACTCCTAATTCTGATGTATGGGCAGCTCTACTGAGCTCAGCTAAGCTTCATGGCAACATTGAAATGGCATGCATAGCTGCCAATGAACTATTTAAGCTGAATGCCGACAGTCGACCAGGGGCTTATGTTGCATTGTCCAATACTTTTGCAGAAGCTGGGAAATGGGACAATGTTAGTGAATTGAGAGAGATTATGAAGATGAGAAGAGTTAAATGCAAAGGTAGCAGTTGGGTGGGGGCTGATGGCAGCTTATAA

mRNA sequence

ATGGAGCATTGTGCATGTATGGTGGATCTGCTGGGACGTGCAGGAAGTTTACATCAGGCATGGGAATTCGTTATGCAAATGCCTGAGACTCCTAATTCTGATGTATGGGCAGCTCTACTGAGCTCAGCTAAGCTTCATGGCAACATTGAAATGGCATGCATAGCTGCCAATGAACTATTTAAGCTGAATGCCGACAGTCGACCAGGGGCTTATGTTGCATTGTCCAATACTTTTGCAGAAGCTGGGAAATGGGACAATGTTAGTGAATTGAGAGAGATTATGAAGATGAGAAGAGTTAAATGCAAAGGTAGCAGTTGGGTGGGGGCTGATGGCAGCTTATAA

Coding sequence (CDS)

ATGGAGCATTGTGCATGTATGGTGGATCTGCTGGGACGTGCAGGAAGTTTACATCAGGCATGGGAATTCGTTATGCAAATGCCTGAGACTCCTAATTCTGATGTATGGGCAGCTCTACTGAGCTCAGCTAAGCTTCATGGCAACATTGAAATGGCATGCATAGCTGCCAATGAACTATTTAAGCTGAATGCCGACAGTCGACCAGGGGCTTATGTTGCATTGTCCAATACTTTTGCAGAAGCTGGGAAATGGGACAATGTTAGTGAATTGAGAGAGATTATGAAGATGAGAAGAGTTAAATGCAAAGGTAGCAGTTGGGTGGGGGCTGATGGCAGCTTATAA

Protein sequence

MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELFKLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCKGSSWVGADGSL
Homology
[Close]
BLAST of Lcy12g004500 vs. ExPASy Swiss-Prot
Match: Q1PFQ9 (Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E34 PE=2 SV=2)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-37
Identity = 73/111 (65.77%), Postives = 89/111 (80.18%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           MEH AC+VDL+GRAG L++A+EF   MPE P+SD+WAALLSS  LHGN+E+A IAA+ELF
Sbjct: 410 MEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASELF 469

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRV-KCKGSSWVGAD 111
           KLNAD RPGAY+ALSN +A   KWDNVS++RE+MK RR+ K  G SW   D
Sbjct: 470 KLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRSWTSED 520

[Close]
BLAST of Lcy12g004500 vs. ExPASy Swiss-Prot
Match: Q9LUL5 (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H57 PE=2 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-23
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           +EH AC+VD+LGRAG + +A + +  MP  P++ +W +LL+S +LHGN+ +  IAA ELF
Sbjct: 474 LEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELF 533

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCK-GSSWV 108
            L   + PG YV +SN +A+A  WDNV ++RE+MK R VK + G SWV
Sbjct: 534 VLEPHN-PGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWV 580

[Close]
BLAST of Lcy12g004500 vs. ExPASy Swiss-Prot
Match: P0C899 (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.3e-21
Identity = 46/100 (46.00%), Postives = 70/100 (70.00%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           +EH ACMVDLLGRAG + +A+ F+  M   PN  VW ALL + ++H + ++  +AA++LF
Sbjct: 446 LEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLF 505

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVK 101
           +L A  + G YV LSN +A+AG+W+ V+ +R IMK + +K
Sbjct: 506 QL-APEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLK 544

[Close]
BLAST of Lcy12g004500 vs. ExPASy Swiss-Prot
Match: Q9LNU6 (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-20
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           +EH +CMV+LLGRAG L +A++ + +MP  P+S VW ALL+S +L  N+++A IAA +LF
Sbjct: 525 LEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLF 584

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCK-GSSWV 108
            L  ++ PG YV LSN +A  G W  V  +R  M+   +K   G SW+
Sbjct: 585 HLEPEN-PGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631

[Close]
BLAST of Lcy12g004500 vs. ExPASy Swiss-Prot
Match: Q9STE1 (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E36 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-20
Identity = 49/107 (45.79%), Postives = 72/107 (67.29%), Query Frame = 0 

Query: 2   EHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELFK 61
           EH AC+VDL GRAG L +A+E V  MP  P++ VW  LL + +LH N+E+A +A+++L  
Sbjct: 681 EHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMD 740

Query: 62  LNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRV-KCKGSSWV 108
           L+  S  G YV +SN  A A +W++V+++R +MK R V K  G SW+
Sbjct: 741 LD-PSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWI 786

[Close]
BLAST of Lcy12g004500 vs. ExPASy TrEMBL
Match: A0A6J1K506 (pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111490117 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 108/113 (95.58%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           +EH ACMVDLLGRAGSLHQAWEF+MQMPE PNSDVWAALLSSAKLHGNIEMACIAANELF
Sbjct: 410 LEHYACMVDLLGRAGSLHQAWEFIMQMPEPPNSDVWAALLSSAKLHGNIEMACIAANELF 469

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCKGSSWVGADGSL 114
           KLNADSRPGAYVALSNTFAEAGKWDNVSELRE+MKMRRVKCKGSSWVGADGSL
Sbjct: 470 KLNADSRPGAYVALSNTFAEAGKWDNVSELREVMKMRRVKCKGSSWVGADGSL 522

[Close]
BLAST of Lcy12g004500 vs. ExPASy TrEMBL
Match: A0A6J1GUP8 (pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111457097 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.5e-56
Identity = 107/113 (94.69%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           +EH ACMVDLLGRAGSLHQAWEF+MQMPE PNSDVWAALLSSAKLHGNIEMACIAANE+F
Sbjct: 410 LEHYACMVDLLGRAGSLHQAWEFIMQMPEPPNSDVWAALLSSAKLHGNIEMACIAANEVF 469

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCKGSSWVGADGSL 114
           KLNADSRPGAYVALSNTFAEAGKWDNVSELRE+MKMRRVKCKGSSWVGADGSL
Sbjct: 470 KLNADSRPGAYVALSNTFAEAGKWDNVSELREVMKMRRVKCKGSSWVGADGSL 522

[Close]
BLAST of Lcy12g004500 vs. ExPASy TrEMBL
Match: A0A6J1CEY8 (pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111010629 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.1e-54
Identity = 105/113 (92.92%), Postives = 108/113 (95.58%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           MEH ACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSS+KLHGNIEMACIAANELF
Sbjct: 411 MEHYACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSSKLHGNIEMACIAANELF 470

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCKGSSWVGADGSL 114
           KLNAD RPGAYVALSNTFAEAGKWD+VSELREIMK+RRV CKGSSWVG D SL
Sbjct: 471 KLNADGRPGAYVALSNTFAEAGKWDSVSELREIMKIRRVNCKGSSWVGTDDSL 523

[Close]
BLAST of Lcy12g004500 vs. ExPASy TrEMBL
Match: A0A5A7UQW1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002130 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.9e-52
Identity = 104/114 (91.23%), Postives = 109/114 (95.61%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           MEH ACMVDLLGRAGSL QAWEFVMQMPETPNSDVWAALLSSAKLHGN+EMAC AANELF
Sbjct: 410 MEHYACMVDLLGRAGSLLQAWEFVMQMPETPNSDVWAALLSSAKLHGNVEMACTAANELF 469

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCKGSSWVGA-DGSL 114
           KLNA+SRPGAYVALSNTFAEAGKW+NVSELREIMK++RVKCKGSSW GA DGSL
Sbjct: 470 KLNANSRPGAYVALSNTFAEAGKWNNVSELREIMKIKRVKCKGSSWFGAGDGSL 523

[Close]
BLAST of Lcy12g004500 vs. ExPASy TrEMBL
Match: A0A1S4DW82 (pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103486768 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.9e-52
Identity = 104/114 (91.23%), Postives = 109/114 (95.61%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           MEH ACMVDLLGRAGSL QAWEFVMQMPETPNSDVWAALLSSAKLHGN+EMAC AANELF
Sbjct: 410 MEHYACMVDLLGRAGSLLQAWEFVMQMPETPNSDVWAALLSSAKLHGNVEMACTAANELF 469

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCKGSSWVGA-DGSL 114
           KLNA+SRPGAYVALSNTFAEAGKW+NVSELREIMK++RVKCKGSSW GA DGSL
Sbjct: 470 KLNANSRPGAYVALSNTFAEAGKWNNVSELREIMKIKRVKCKGSSWFGAGDGSL 523

[Close]
BLAST of Lcy12g004500 vs. NCBI nr
Match: XP_022994383.1 (pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Cucurbita maxima])

HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56
Identity = 108/113 (95.58%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           +EH ACMVDLLGRAGSLHQAWEF+MQMPE PNSDVWAALLSSAKLHGNIEMACIAANELF
Sbjct: 410 LEHYACMVDLLGRAGSLHQAWEFIMQMPEPPNSDVWAALLSSAKLHGNIEMACIAANELF 469

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCKGSSWVGADGSL 114
           KLNADSRPGAYVALSNTFAEAGKWDNVSELRE+MKMRRVKCKGSSWVGADGSL
Sbjct: 470 KLNADSRPGAYVALSNTFAEAGKWDNVSELREVMKMRRVKCKGSSWVGADGSL 522

[Close]
BLAST of Lcy12g004500 vs. NCBI nr
Match: XP_023541225.1 (pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56
Identity = 108/113 (95.58%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           +EH ACMVDLLGRAGSLHQAWEF+MQMPE PNSDVWAALLSSAKLHGNIEMACIAANELF
Sbjct: 410 LEHYACMVDLLGRAGSLHQAWEFIMQMPEPPNSDVWAALLSSAKLHGNIEMACIAANELF 469

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCKGSSWVGADGSL 114
           KLNADSRPGAYVALSNTFAEAGKWDNVSELRE+MKMRRVKCKGSSWVGADGSL
Sbjct: 470 KLNADSRPGAYVALSNTFAEAGKWDNVSELREVMKMRRVKCKGSSWVGADGSL 522

[Close]
BLAST of Lcy12g004500 vs. NCBI nr
Match: KAG7012465.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56
Identity = 108/113 (95.58%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           +EH ACMVDLLGRAGSLHQAWEF+MQMPE PNSDVWAALLSSAKLHGNIEMACIAANELF
Sbjct: 410 LEHYACMVDLLGRAGSLHQAWEFIMQMPEPPNSDVWAALLSSAKLHGNIEMACIAANELF 469

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCKGSSWVGADGSL 114
           KLNADSRPGAYVALSNTFAEAGKWDNVSELRE+MKMRRVKCKGSSWVGADGSL
Sbjct: 470 KLNADSRPGAYVALSNTFAEAGKWDNVSELREVMKMRRVKCKGSSWVGADGSL 522

[Close]
BLAST of Lcy12g004500 vs. NCBI nr
Match: KAG6573296.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56
Identity = 108/113 (95.58%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           +EH ACMVDLLGRAGSLHQAWEF+MQMPE PNSDVWAALLSSAKLHGNIEMACIAANELF
Sbjct: 410 LEHYACMVDLLGRAGSLHQAWEFIMQMPEPPNSDVWAALLSSAKLHGNIEMACIAANELF 469

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCKGSSWVGADGSL 114
           KLNADSRPGAYVALSNTFAEAGKWDNVSELRE+MKMRRVKCKGSSWVGADGSL
Sbjct: 470 KLNADSRPGAYVALSNTFAEAGKWDNVSELREVMKMRRVKCKGSSWVGADGSL 522

[Close]
BLAST of Lcy12g004500 vs. NCBI nr
Match: XP_022955014.1 (pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Cucurbita moschata])

HSP 1 Score: 227.6 bits (579), Expect = 5.2e-56
Identity = 107/113 (94.69%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           +EH ACMVDLLGRAGSLHQAWEF+MQMPE PNSDVWAALLSSAKLHGNIEMACIAANE+F
Sbjct: 410 LEHYACMVDLLGRAGSLHQAWEFIMQMPEPPNSDVWAALLSSAKLHGNIEMACIAANEVF 469

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCKGSSWVGADGSL 114
           KLNADSRPGAYVALSNTFAEAGKWDNVSELRE+MKMRRVKCKGSSWVGADGSL
Sbjct: 470 KLNADSRPGAYVALSNTFAEAGKWDNVSELREVMKMRRVKCKGSSWVGADGSL 522

[Close]
BLAST of Lcy12g004500 vs. TAIR 10
Match: AT1G28690.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-38
Identity = 73/111 (65.77%), Postives = 89/111 (80.18%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           MEH AC+VDL+GRAG L++A+EF   MPE P+SD+WAALLSS  LHGN+E+A IAA+ELF
Sbjct: 410 MEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASELF 469

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRV-KCKGSSWVGAD 111
           KLNAD RPGAY+ALSN +A   KWDNVS++RE+MK RR+ K  G SW   D
Sbjct: 470 KLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRSWTSED 520

[Close]
BLAST of Lcy12g004500 vs. TAIR 10
Match: AT3G14330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 8.7e-25
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           +EH AC+VD+LGRAG + +A + +  MP  P++ +W +LL+S +LHGN+ +  IAA ELF
Sbjct: 474 LEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELF 533

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCK-GSSWV 108
            L   + PG YV +SN +A+A  WDNV ++RE+MK R VK + G SWV
Sbjct: 534 VLEPHN-PGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWV 580

[Close]
BLAST of Lcy12g004500 vs. TAIR 10
Match: AT3G49142.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-22
Identity = 46/100 (46.00%), Postives = 70/100 (70.00%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           +EH ACMVDLLGRAG + +A+ F+  M   PN  VW ALL + ++H + ++  +AA++LF
Sbjct: 446 LEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLF 505

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVK 101
           +L A  + G YV LSN +A+AG+W+ V+ +R IMK + +K
Sbjct: 506 QL-APEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLK 544

[Close]
BLAST of Lcy12g004500 vs. TAIR 10
Match: AT1G20230.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 0 

Query: 1   MEHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELF 60
           +EH +CMV+LLGRAG L +A++ + +MP  P+S VW ALL+S +L  N+++A IAA +LF
Sbjct: 525 LEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLF 584

Query: 61  KLNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRVKCK-GSSWV 108
            L  ++ PG YV LSN +A  G W  V  +R  M+   +K   G SW+
Sbjct: 585 HLEPEN-PGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631

[Close]
BLAST of Lcy12g004500 vs. TAIR 10
Match: AT4G21300.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-21
Identity = 49/107 (45.79%), Postives = 72/107 (67.29%), Query Frame = 0 

Query: 2   EHCACMVDLLGRAGSLHQAWEFVMQMPETPNSDVWAALLSSAKLHGNIEMACIAANELFK 61
           EH AC+VDL GRAG L +A+E V  MP  P++ VW  LL + +LH N+E+A +A+++L  
Sbjct: 681 EHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMD 740

Query: 62  LNADSRPGAYVALSNTFAEAGKWDNVSELREIMKMRRV-KCKGSSWV 108
           L+  S  G YV +SN  A A +W++V+++R +MK R V K  G SW+
Sbjct: 741 LD-PSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWI 786

The following BLAST results are available for this feature:
BLAST of Lcy12g004500 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1PFQ91.5e-3765.77Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidop... [more]
Q9LUL51.2e-2349.07Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana OX... [more]
P0C8993.3e-2146.00Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th... [more]
Q9LNU61.7e-2045.37Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX... [more]
Q9STE12.8e-2045.79Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana OX... [more]
BLAST of Lcy12g004500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K5061.1e-5695.58pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Cucurbit... [more]
A0A6J1GUP82.5e-5694.69pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Cucurbit... [more]
A0A6J1CEY83.1e-5492.92pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Momordic... [more]
A0A5A7UQW14.9e-5291.23Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4DW824.9e-5291.23pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Cucumis ... [more]
BLAST of Lcy12g004500 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022994383.12.3e-5695.58pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Cucurbita ... [more]
XP_023541225.12.3e-5695.58pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Cucurbita ... [more]
KAG7012465.12.3e-5695.58Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
KAG6573296.12.3e-5695.58Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_022955014.15.2e-5694.69pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Cucurbita ... [more]
BLAST of Lcy12g004500 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G28690.11.1e-3865.77Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G14330.18.7e-2549.07Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G49142.12.4e-2246.00Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G20230.11.2e-2145.37Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G21300.12.0e-2145.79Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..112
e-value: 9.3E-12
score: 46.9
NoneNo IPR availablePANTHERPTHR47926:SF247BNAC03G58820D PROTEINcoord: 1..110
NoneNo IPR availablePANTHERPTHR47926PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g004500.1Lcy12g004500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding