Lcy12g004420 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g004420
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DUF4283 domain-containing protein
Location	Chr12: 16263375 .. 16264163 (+)
RNA-Seq Expression	Lcy12g004420
Synteny	Lcy12g004420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTGATATCTGAATACCCTGGAGAAGCCCATCGTAATCAACCAAAGCAACAAGTATCCTCCTACAAAGAAATTATTCAGCGAAAACCCCTTGCTTCCAACTCTTCTACCCTCCAAACTGAAAACGATCATCCAAAGGATGAAGGGAATGAGATTATTGTTGTTCAGAGATGTCTTTTGAAAGATGATTGGTCAAGTATAAAAAATGCTATCCTTGCATCCTTTGCTGAGAGATGTACGTACCATTAACCCTTTCCAAGATAATAAGGCATTACTCCATGTATATGATCAACATATATCCGACGCCCTTCTTCGTCTTGATGATTGGTCTCTGGTTGGGAACTATCAACTGAAATTTTATCCCTTGTCTTCACAATCATATCTACAAGATAATATGACCTCATCATATGGAGGATGGATAGGGATTAAAAATCTCCCATTAACACTCTGGACAAAGCCTATTTTCAGATTCATAGGAGACTCTTGCGGTGGTTTTGAGGCAATCTCCAGTCAAACGGAGCGTTGGATTGACATTACAGAAGCTCGAATCAAAATCAAACGGAACTCTAAAGGTTTTATTCCATCATCCATCATGCTCCCCAAACCTCTTGACGGAGTAGAGTACTCTGTTCAAATTCAAGGCATTGACAACCACCGACAGAACGCCATGGCTGCCGGATCTCCAAGCGGCGCCGCCAGCCCAGAATCTATGGTGCCCAAAAAGGAAAATTTGGATTTCCTCTTAATGATGAAAGAGAAAAGCCCAAATCACGCTGAATTAAATGGCTAG

mRNA sequence

CCTTGATATCTGAATACCCTGGAGAAGCCCATCGTAATCAACCAAAGCAACAAGTATCCTCCTACAAAGAAATTATTCAGCGAAAACCCCTTGCTTCCAACTCTTCTACCCTCCAAACTGAAAACGATCATCCAAAGGATGAAGGGAATGAGATTATTGTTGTTCAGAGATGTCTTTTGAAAGATGATTGGTCAAGTATAAAAAATGCTATCCTTGCATCCTTTGCTGAGAGATGTACGTACCATTAACCCTTTCCAAGATAATAAGGCATTACTCCATGTATATGATCAACATATATCCGACGCCCTTCTTCGTCTTGATGATTGGTCTCTGGTTGGGAACTATCAACTGAAATTTTATCCCTTGTCTTCACAATCATATCTACAAGATAATATGACCTCATCATATGGAGGATGGATAGGGATTAAAAATCTCCCATTAACACTCTGGACAAAGCCTATTTTCAGATTCATAGGAGACTCTTGCGGTGGTTTTGAGGCAATCTCCAGTCAAACGGAGCGTTGGATTGACATTACAGAAGCTCGAATCAAAATCAAACGGAACTCTAAAGGTTTTATTCCATCATCCATCATGCTCCCCAAACCTCTTGACGGAGTAGAGTACTCTGTTCAAATTCAAGGCATTGACAACCACCGACAGAACGCCATGGCTGCCGGATCTCCAAGCGGCGCCGCCAGCCCAGAATCTATGGTGCCCAAAAAGGAAAATTTGGATTTCCTCTTAATGATGAAAGAGAAAAGCCCAAATCACGCTGAATTAAATGGCTAG

Coding sequence (CDS)

ATGCTATCCTTGCATCCTTTGCTGAGAGATGTACGTACCATTAACCCTTTCCAAGATAATAAGGCATTACTCCATGTATATGATCAACATATATCCGACGCCCTTCTTCGTCTTGATGATTGGTCTCTGGTTGGGAACTATCAACTGAAATTTTATCCCTTGTCTTCACAATCATATCTACAAGATAATATGACCTCATCATATGGAGGATGGATAGGGATTAAAAATCTCCCATTAACACTCTGGACAAAGCCTATTTTCAGATTCATAGGAGACTCTTGCGGTGGTTTTGAGGCAATCTCCAGTCAAACGGAGCGTTGGATTGACATTACAGAAGCTCGAATCAAAATCAAACGGAACTCTAAAGGTTTTATTCCATCATCCATCATGCTCCCCAAACCTCTTGACGGAGTAGAGTACTCTGTTCAAATTCAAGGCATTGACAACCACCGACAGAACGCCATGGCTGCCGGATCTCCAAGCGGCGCCGCCAGCCCAGAATCTATGGTGCCCAAAAAGGAAAATTTGGATTTCCTCTTAATGATGAAAGAGAAAAGCCCAAATCACGCTGAATTAAATGGCTAG

Protein sequence

MLSLHPLLRDVRTINPFQDNKALLHVYDQHISDALLRLDDWSLVGNYQLKFYPLSSQSYLQDNMTSSYGGWIGIKNLPLTLWTKPIFRFIGDSCGGFEAISSQTERWIDITEARIKIKRNSKGFIPSSIMLPKPLDGVEYSVQIQGIDNHRQNAMAAGSPSGAASPESMVPKKENLDFLLMMKEKSPNHAELNG

Homology

[Close]

BLAST of Lcy12g004420 vs. ExPASy TrEMBL
Match: A0A5A7TEK8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002490 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.0e-18
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 16  PFQDNKALLHVYDQHISDALLRLDDWSLVGNYQLKFYPLSSQSYLQDNMTSSYGGWIGIK 75
           PF+ +KAL++  ++  +  L +   W+ VG + +KF   S +++    +  SYGGWI ++
Sbjct: 217 PFRADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVR 276

Query: 76  NLPLTLWTKPIFRFIGDSCGGFEAISSQTERWIDITEARIKIKRNSKGFIPSSIMLPKPL 135
            +PL  W    F  IGD+CGGF  ++ +T    DI EA IKIK N  GFIP+ I L    
Sbjct: 277 GVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYSGFIPAYIKL---F 336

Query: 136 DGVEYSVQIQGI 148
           D  E+S  +Q I
Sbjct: 337 DKEEHSFIVQVI 345

[Close]

BLAST of Lcy12g004420 vs. ExPASy TrEMBL
Match: A0A5D3DLP0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00770 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 16  PFQDNKALLHVYDQHISDALLRLDDWSLVGNYQLKFYPLSSQSYLQDNMTSSYGGWIGIK 75
           PF  +KAL++  ++  +  L +   W+ VG + +KF   S +++    +  SYGGWI ++
Sbjct: 217 PFHADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVR 276

Query: 76  NLPLTLWTKPIFRFIGDSCGGFEAISSQTERWIDITEARIKIKRNSKGFIPSSIMLPKPL 135
            +PL  W    F  IGD+CGGF  ++ +T    DI EA IKIK N  GFIP+ I L    
Sbjct: 277 GVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYSGFIPAYIKL---F 336

Query: 136 DGVEYSVQIQGI 148
           D  E+S  +Q I
Sbjct: 337 DKEEHSFIVQVI 345

[Close]

BLAST of Lcy12g004420 vs. ExPASy TrEMBL
Match: A0A5A7TFK7 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00060 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-17
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 16  PFQDNKALLHVYDQHISDALLRLDDWSLVGNYQLKFYPLSSQSYLQDNMTSSYGGWIGIK 75
           PF  +KAL++  ++  +  L +   W+ VG + +KF   S +++    +  SYGGWI ++
Sbjct: 233 PFHADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVR 292

Query: 76  NLPLTLWTKPIFRFIGDSCGGFEAISSQTERWIDITEARIKIKRNSKGFIPSSIMLPKPL 135
            +PL  W    F  IGD+CGGF  ++ +T    DI EA IKIK N  GFIP+ I L    
Sbjct: 293 GVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYTGFIPAYIKL---F 352

Query: 136 DGVEYSVQIQGI 148
           D  E+S  +Q I
Sbjct: 353 DKEEHSFIVQVI 361

[Close]

BLAST of Lcy12g004420 vs. ExPASy TrEMBL
Match: A0A0A0K504 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G324120 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-17
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 44  VGNYQLKFYPLSSQSYLQDNMTSSYGGWIGIKNLPLTLWTKPIFRFIGDSCGGFEAISSQ 103
           +G +Q+KF   S  S  Q +  +S+GGWI   NLP   W   IF + GD C GF + S Q
Sbjct: 15  LGQHQIKFMNASHISSFQPSFAASFGGWIDTINLPPPTWKDEIFPYTGDQCSGFISASDQ 74

Query: 104 TERWIDITEARIKIKRNSKGFIPSSIMLPKPLDGVEYSVQIQGIDN 150
           T R I +T ARIKIK N+  FI + ++LP  L G+E++V I+G+ N
Sbjct: 75  TNRVIVLTAARIKIKPNTHDFIQNKLVLPPELCGMEWTVDIKGVSN 120

[Close]

BLAST of Lcy12g004420 vs. ExPASy TrEMBL
Match: A0A5A7U495 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00340 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.9e-17
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 16  PFQDNKALLHVYDQHISDALLRLDDWSLVGNYQLKFYPLSSQSYLQDNMTSSYGGWIGIK 75
           PF  +KAL+   ++  ++ + +   W+ VG + +KF   + +++    +  SYGGWI ++
Sbjct: 271 PFHADKALICFKNEEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVR 330

Query: 76  NLPLTLWTKPIFRFIGDSCGGFEAISSQTERWIDITEARIKIKRNSKGFIPSSIMLPKPL 135
            +PL  W    F  IGD+CGGF  ++ +T    DI EA I+IK N  GFIP+ I L    
Sbjct: 331 GVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYSGFIPAFIKL---F 390

Query: 136 DGVEYSVQIQGI 148
           D  E+S  IQ I
Sbjct: 391 DKEEHSFIIQVI 399

[Close]

BLAST of Lcy12g004420 vs. NCBI nr
Match: KAA0039967.1 (hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-17
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 16  PFQDNKALLHVYDQHISDALLRLDDWSLVGNYQLKFYPLSSQSYLQDNMTSSYGGWIGIK 75
           PF+ +KAL++  ++  +  L +   W+ VG + +KF   S +++    +  SYGGWI ++
Sbjct: 217 PFRADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVR 276

Query: 76  NLPLTLWTKPIFRFIGDSCGGFEAISSQTERWIDITEARIKIKRNSKGFIPSSIMLPKPL 135
            +PL  W    F  IGD+CGGF  ++ +T    DI EA IKIK N  GFIP+ I L    
Sbjct: 277 GVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYSGFIPAYIKL---F 336

Query: 136 DGVEYSVQIQGI 148
           D  E+S  +Q I
Sbjct: 337 DKEEHSFIVQVI 345

[Close]

BLAST of Lcy12g004420 vs. NCBI nr
Match: TYK24535.1 (hypothetical protein E5676_scaffold266G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-17
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 16  PFQDNKALLHVYDQHISDALLRLDDWSLVGNYQLKFYPLSSQSYLQDNMTSSYGGWIGIK 75
           PF  +KAL++  ++  +  L +   W+ VG + +KF   S +++    +  SYGGWI ++
Sbjct: 217 PFHADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVR 276

Query: 76  NLPLTLWTKPIFRFIGDSCGGFEAISSQTERWIDITEARIKIKRNSKGFIPSSIMLPKPL 135
            +PL  W    F  IGD+CGGF  ++ +T    DI EA IKIK N  GFIP+ I L    
Sbjct: 277 GVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYSGFIPAYIKL---F 336

Query: 136 DGVEYSVQIQGI 148
           D  E+S  +Q I
Sbjct: 337 DKEEHSFIVQVI 345

[Close]

BLAST of Lcy12g004420 vs. NCBI nr
Match: KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-17
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 16  PFQDNKALLHVYDQHISDALLRLDDWSLVGNYQLKFYPLSSQSYLQDNMTSSYGGWIGIK 75
           PF  +KAL++  ++  +  L +   W+ VG + +KF   S +++    +  SYGGWI ++
Sbjct: 233 PFHADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVR 292

Query: 76  NLPLTLWTKPIFRFIGDSCGGFEAISSQTERWIDITEARIKIKRNSKGFIPSSIMLPKPL 135
            +PL  W    F  IGD+CGGF  ++ +T    DI EA IKIK N  GFIP+ I L    
Sbjct: 293 GVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYTGFIPAYIKL---F 352

Query: 136 DGVEYSVQIQGI 148
           D  E+S  +Q I
Sbjct: 353 DKEEHSFIVQVI 361

[Close]

BLAST of Lcy12g004420 vs. NCBI nr
Match: KAA0050054.1 (hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-16
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 16  PFQDNKALLHVYDQHISDALLRLDDWSLVGNYQLKFYPLSSQSYLQDNMTSSYGGWIGIK 75
           PF  +KAL+   ++  ++ + +   W+ VG + +KF   + +++    +  SYGGWI ++
Sbjct: 271 PFHADKALICFKNEEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVR 330

Query: 76  NLPLTLWTKPIFRFIGDSCGGFEAISSQTERWIDITEARIKIKRNSKGFIPSSIMLPKPL 135
            +PL  W    F  IGD+CGGF  ++ +T    DI EA I+IK N  GFIP+ I L    
Sbjct: 331 GVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYSGFIPAFIKL---F 390

Query: 136 DGVEYSVQIQGI 148
           D  E+S  IQ I
Sbjct: 391 DKEEHSFIIQVI 399

[Close]

BLAST of Lcy12g004420 vs. NCBI nr
Match: TYK10355.1 (hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-16
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 16  PFQDNKALLHVYDQHISDALLRLDDWSLVGNYQLKFYPLSSQSYLQDNMTSSYGGWIGIK 75
           PF  +KAL+   ++  ++ + +   W+ VG + +KF   + +++    +  SYGGWI ++
Sbjct: 323 PFHADKALICFKNEEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVR 382

Query: 76  NLPLTLWTKPIFRFIGDSCGGFEAISSQTERWIDITEARIKIKRNSKGFIPSSIMLPKPL 135
            +PL  W    F  IGD+CGGF  ++ +T    DI EA I+IK N  GFIP+ I L    
Sbjct: 383 GVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYSGFIPAFIKL---F 442

Query: 136 DGVEYSVQIQGI 148
           D  E+S  IQ I
Sbjct: 443 DKEEHSFIIQVI 451

The following BLAST results are available for this feature:

BLAST of Lcy12g004420 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g004420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TEK8	8.0e-18	37.88	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DLP0	1.0e-17	37.88	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TFK7	1.4e-17	37.88	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A0A0K504	1.4e-17	44.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G324120 PE=4 SV=1	[more]
A0A5A7U495	8.9e-17	36.36	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Lcy12g004420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039967.1	1.7e-17	37.88	hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa]	[more]
TYK24535.1	2.2e-17	37.88	hypothetical protein E5676_scaffold266G00770 [Cucumis melo var. makuwa]	[more]
KAA0040039.1	2.8e-17	37.88	hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa]	[more]
KAA0050054.1	1.8e-16	36.36	hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa]	[more]
TYK10355.1	1.8e-16	36.36	hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy12g004420 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 14..117 e-value: 4.2E-11 score: 42.5
None	No IPR available	PANTHER	PTHR34427	DUF4283 DOMAIN PROTEIN	coord: 54..144
None	No IPR available	PANTHER	PTHR34427:SF5	DUF4283 DOMAIN PROTEIN	coord: 54..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g004420.1	Lcy12g004420.1	mRNA