Lcy12g004270 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g004270
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr12: 15085192 .. 15085746 (+)
RNA-Seq Expression	Lcy12g004270
Synteny	Lcy12g004270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCAATTCATTTTTCCATCCAACTACTTCCTCAACGCCATGGGAGGCAATGGTCGACAAAAAAAATCTCATTCTTCCTTCTCAATCTTTAGCTTTTTCAAATCCAGAAAGGGTAGAAAAGGAGATCATTATGATGGTTCTTGGAACGAGGTGTCAACTTCGAGCAAGGTGTGGCCGAGCGATGAGGACAAAACTCATCGTTGGGTTGCTGAACCTGGTATCGATAGAAAAGCAAAAGATTACATTGACAGGATCTATCGAAACCGTGTTTTAGAAACCGAGCACCAAACTGTCACTATTCCTCCTCCTGGAACCAAGCTCGAATGATTTGTGGACATATCTCTATTTTTATTATTGTTATTATTTTGTGTCTTAGTATCCTCTATATTCTAATTTGTAAATAGGGTATTAGTTCATTAAATAATATAGTTTGTAGTTAAAGGACTTATTGATGTTCAAATGGAATATTATTTAGGACTTGTTTGATATGCAGTCTAGATTATGTTTTATATTTTTAAATTCATTGAGTTCAACTAATATGCATTGGATAGATGT

mRNA sequence

ATTCAATTCATTTTTCCATCCAACTACTTCCTCAACGCCATGGGAGGCAATGGTCGACAAAAAAAATCTCATTCTTCCTTCTCAATCTTTAGCTTTTTCAAATCCAGAAAGGGTAGAAAAGGAGATCATTATGATGGTTCTTGGAACGAGGTGTCAACTTCGAGCAAGGTGTGGCCGAGCGATGAGGACAAAACTCATCGTTGGGTTGCTGAACCTGGTATCGATAGAAAAGCAAAAGATTACATTGACAGGATCTATCGAAACCGTGTTTTAGAAACCGAGCACCAAACTGTCACTATTCCTCCTCCTGGAACCAAGCTCGAATGATTTGTGGACATATCTCTATTTTTATTATTGTTATTATTTTGTGTCTTAGTATCCTCTATATTCTAATTTGTAAATAGGGTATTAGTTCATTAAATAATATAGTTTGTAGTTAAAGGACTTATTGATGTTCAAATGGAATATTATTTAGGACTTGTTTGATATGCAGTCTAGATTATGTTTTATATTTTTAAATTCATTGAGTTCAACTAATATGCATTGGATAGATGT

Coding sequence (CDS)

ATGGGAGGCAATGGTCGACAAAAAAAATCTCATTCTTCCTTCTCAATCTTTAGCTTTTTCAAATCCAGAAAGGGTAGAAAAGGAGATCATTATGATGGTTCTTGGAACGAGGTGTCAACTTCGAGCAAGGTGTGGCCGAGCGATGAGGACAAAACTCATCGTTGGGTTGCTGAACCTGGTATCGATAGAAAAGCAAAAGATTACATTGACAGGATCTATCGAAACCGTGTTTTAGAAACCGAGCACCAAACTGTCACTATTCCTCCTCCTGGAACCAAGCTCGAATGA

Protein sequence

MGGNGRQKKSHSSFSIFSFFKSRKGRKGDHYDGSWNEVSTSSKVWPSDEDKTHRWVAEPGIDRKAKDYIDRIYRNRVLETEHQTVTIPPPGTKLE

Homology

[Close]

BLAST of Lcy12g004270 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.7e-34
Identity = 78/96 (81.25%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1  MGGNGRQKKSHSSFSIFSFFKSRKGRKGDHYD--GSW-NEVSTSSKVWPSDEDKTHRWVA 60
          MGGN RQKKSHSSFSIFSFFKSR+GRKGDHYD  G+W +E+  S+KVWPSDEDK H WVA
Sbjct: 1  MGGN-RQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLETEHQTVTIPPPGTK 94
          EPGIDRKAKDYIDRIYRNRV E+E QTVTI P GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTK 95

[Close]

BLAST of Lcy12g004270 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.5e-33
Identity = 76/96 (79.17%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1  MGGNGRQKKSHSSFSIFSFFKSRKGRKGDHYD--GSW-NEVSTSSKVWPSDEDKTHRWVA 60
          MGGN RQKKSHSSFSIFSFFKS++GRKGDHYD  G+W +E+  S+KVWPSDEDK H W+A
Sbjct: 1  MGGN-RQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLETEHQTVTIPPPGTK 94
          EPGIDRKAKDYIDRIYRNRV E+E QTVTI P GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTK 95

[Close]

BLAST of Lcy12g004270 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.2e-32
Identity = 73/96 (76.04%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1  MGGNGRQKKSHSSFSIFSFFKSRKGRKGD---HYDGSWNEVSTSSKVWPSDEDKTHRWVA 60
          MGGN RQKKSHSSFSIFSFFKSR+GRKGD   H     +E+  S KVWPSDEDK H WVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLETEHQTVTIPPPGTK 94
          EPGIDRKAKDYIDRIYRNRV E+E QT+TI P GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTK 96

[Close]

BLAST of Lcy12g004270 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.4e-31
Identity = 71/93 (76.34%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 1  MGGNGRQKKSHSSFSIFSFFKSRKGRKGDHYD--GSWNEVSTSSKVWPSDEDKTHRWVAE 60
          MGG+ RQKK+HSSFSIFSFFKS++GRKGD Y+   +W +V +SSKVWPSDEDK +RWVAE
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLETEHQTVTIPPPG 92
          PGIDRKAKDYIDRIY+NRV ETE QTVTI P G
Sbjct: 61 PGIDRKAKDYIDRIYKNRVFETERQTVTIHPNG 93

[Close]

BLAST of Lcy12g004270 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.1e-31
Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MGGNGRQKKSHSSFSIFSFFKSRKGRKGDH--YDGS-WNEVSTSSKVWPSDEDKTHRWVA 60
          MGGN RQKK+H+SFSIFSFFKSR+GRKGDH  + GS  +E+  S KVWPSDEDK H WVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLETEHQTVTIPPPGTK 94
          EPGIDRKAKDYIDRIYRNRV E+E QTVTI P G K
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIK 96

[Close]

BLAST of Lcy12g004270 vs. NCBI nr
Match: KAG6592311.1 (hypothetical protein SDJN03_14657, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35
Identity = 77/97 (79.38%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MGGNGRQKKSHSSFSIFSFFKSRKGRKGDHYD--GSWNEVSTSSKVWPSDEDKTHRWVAE 60
          MGGN R KKSHSSFSIF+FFK RKGRK DHYD  G WNE+  S KVWPSDEDKTHRWVAE
Sbjct: 1  MGGNNRSKKSHSSFSIFNFFKFRKGRKEDHYDHGGYWNEMPRSGKVWPSDEDKTHRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLETEHQTVTIPPPGTKLE 96
          PGIDRKAKDYID+IYRNR+ E+E QTVT+P  GTKLE
Sbjct: 61 PGIDRKAKDYIDKIYRNRIFESERQTVTLPANGTKLE 97

[Close]

BLAST of Lcy12g004270 vs. NCBI nr
Match: KAG6592313.1 (hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.7 bits (400), Expect = 2.5e-35
Identity = 76/97 (78.35%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MGGNGRQKKSHSSFSIFSFFKSRKGRKGDHYD--GSWNEVSTSSKVWPSDEDKTHRWVAE 60
          MGGN R KKSHSSFSIF+FFK RKGRK DHYD  G WNE+  S KVWPSDEDKTHRWVAE
Sbjct: 1  MGGNNRSKKSHSSFSIFNFFKFRKGRKEDHYDHGGYWNEMPRSGKVWPSDEDKTHRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLETEHQTVTIPPPGTKLE 96
          PGIDRKAKDYID+IYRNR+ E+E QTVT+P  GTKL+
Sbjct: 61 PGIDRKAKDYIDKIYRNRIFESERQTVTLPANGTKLD 97

[Close]

BLAST of Lcy12g004270 vs. NCBI nr
Match: KAG6592309.1 (hypothetical protein SDJN03_14655, partial [Cucurbita argyrosperma subsp. sororia] >KAG6592312.1 hypothetical protein SDJN03_14658, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155.6 bits (392), Expect = 2.1e-34
Identity = 74/97 (76.29%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MGGNGRQKKSHSSFSIFSFFKSRKGRKGDHYD--GSWNEVSTSSKVWPSDEDKTHRWVAE 60
          MGGN + KKSHSSFSIF+FFK RKGRK DHYD  G WN++  S KVWPSDEDKTHRWVAE
Sbjct: 1  MGGNNQSKKSHSSFSIFNFFKFRKGRKEDHYDHGGYWNKMPRSGKVWPSDEDKTHRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLETEHQTVTIPPPGTKLE 96
          PGIDRKAKDYID+IYRNR+ E+E QTVT+P  GTKL+
Sbjct: 61 PGIDRKAKDYIDKIYRNRIFESERQTVTLPANGTKLD 97

[Close]

BLAST of Lcy12g004270 vs. NCBI nr
Match: KAG6592308.1 (hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-33
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1  MGGNGRQKKSHSSFSIFSFFKSRKGRKGDHYD--GSWNEVSTSSKVWPSDEDKTHRWVAE 60
          MGGN R KK+HSSFSIF+FFKSR+ RK DH D  G W+E+  SSK+WPSDEDK HRWVAE
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKSRRSRKEDHCDHSGGWDEIPRSSKIWPSDEDKIHRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLETEHQTVTIPPPGTKLE 96
          PGIDRKAKDYIDRIYRNRV E+E QTVT+P  GTKL+
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTLPASGTKLD 97

[Close]

BLAST of Lcy12g004270 vs. NCBI nr
Match: KAG6592316.1 (hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 74/97 (76.29%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MGGNGRQKKSHSSFSIFSFFKSRKGRKGDHYD--GSWNEVSTSSKVWPSDEDKTHRWVAE 60
          MGGN R KK+HSSFSIF+FFK R+GRK DH D  G W+E+  S+KVWPSDEDK HRWVAE
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCWDEMPRSNKVWPSDEDKMHRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLETEHQTVTIPPPGTKLE 96
          PGIDRKAKDYIDRIYRNRVLE+E QTVT+P  GTKL+
Sbjct: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKLD 97

[Close]

BLAST of Lcy12g004270 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 4.4e-14
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 1  MGGNGRQKKSHSS--FSIFSFFKSRKGRKGDHYDGSWNEVSTSSKVWPSDEDKTHRWVAE 60
          MGG  R   SHSS  FS+FSFFK+R+  + +  DGSW++   + K   SDEDK + WVAE
Sbjct: 1  MGGKNR---SHSSKRFSLFSFFKTRRSHRVE-ADGSWDDFGYTRKAMASDEDKRY-WVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLETEHQTVT 87
          PGIDRKA  +I + +  RV E+E QT++
Sbjct: 61 PGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Lcy12g004270 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 26 RKGDHY----DGSWNEVSTSSKVWPSDEDKTHRWVAEPGIDRKAKDYIDRIYRNRVLETE 85
          R+  H+    D SW++V  + K W SDEDK + WVAEPGIDRKA  +I + + +RV E+E
Sbjct: 4  RRSSHHRVEADASWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESE 63

Query: 86 HQTVTIPP 90
           Q  T+PP
Sbjct: 64 RQ--TLPP 68

[Close]

BLAST of Lcy12g004270 vs. TAIR 10
Match: AT1G48325.1 (Expressed protein )

HSP 1 Score: 48.5 bits (114), Expect = 3.4e-06
Identity = 28/84 (33.33%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 1  MGGNGRQKKSHSSFSIFSFFKSRKGRKGDHYDGSWNE---VSTSSKVWPSDEDKTHRWVA 60
          MGG+GR++KS SSFS+     +R  ++ D    +WNE   ++   ++  +D+D     +A
Sbjct: 3  MGGHGRRRKSSSSFSVVKSLFARCSKEKD----NWNEERMINVRPRIMTTDDDGCSWTIA 62

Query: 61 EPGIDRKAKDYIDRIYRNRVLETE 82
          EP IDR+A  +I + +   + +TE
Sbjct: 63 EPCIDRRATAFIAKFHETPIQDTE 82

The following BLAST results are available for this feature:

BLAST of Lcy12g004270 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g004270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBW1	8.7e-34	81.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K7Y2	2.5e-33	79.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A5A7SWT9	6.2e-32	76.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K8W0	2.4e-31	76.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0KAK6	3.1e-31	76.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]

BLAST of Lcy12g004270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592311.1	1.1e-35	79.38	hypothetical protein SDJN03_14657, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592313.1	2.5e-35	78.35	hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592309.1	2.1e-34	76.29	hypothetical protein SDJN03_14655, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592308.1	1.1e-33	75.26	hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592316.1	1.4e-33	76.29	hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy12g004270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	4.4e-14	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	1.7e-10	48.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G48325.1	3.4e-06	33.33	Expressed protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..51
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..87
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g004270.1	Lcy12g004270.1	mRNA