Lcy12g004250 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g004250
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	AA_kinase domain-containing protein
Location	Chr12: 14972174 .. 14972689 (+)
RNA-Seq Expression	Lcy12g004250
Synteny	Lcy12g004250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATGGCGCATCTTAGCGACGTTACAAAGAGTCCCGCCATCCTGCTGTTTGCTATCTCCACAGGTCGCTCAGTGGATGTTGGTCAGGTCATCTTTCGCTCCCTGCGCCATATTCGACATAGGAGCACAACAGTAGGGCTTGGGCCTCCTTCCTTGATCATTGCCCTATGTCGAGTTGCTAGTGTCGTGTGGGACTCCCAAGAGGAGCTGGTCCATCCTGGCGCGATCATAGATAATAACTTCATCAGTCGATATCGTGAGCCAAGACCGAGGGATGCGCAGCCAGCTCTTCCCATTCCAGAGCAGCCAAAGCATCCAGAGCAGCCTGAGCATCATGAGCAGGAGGTCCCACATCCATCTATTGAGGAGCAGATGCAGCAGATGCGACTCACCATGCAGCATCTTGTGGAGAATCAGCAGCGTCGTTCGGAGGATCACCAGCGCCTTTTCCTGGAGTTCCACCGCCAGCAGCGTCGGGAGCGGTGCCACTTTCTGTATAGTACACGGTTATAG

mRNA sequence

ATGCCTATGGCGCATCTTAGCGACGTTACAAAGAGTCCCGCCATCCTGCTGTTTGCTATCTCCACAGGTCGCTCAGTGGATGTTGGTCAGGTCATCTTTCGCTCCCTGCGCCATATTCGACATAGGAGCACAACAGTAGGGCTTGGGCCTCCTTCCTTGATCATTGCCCTATGTCGAGTTGCTAGTGTCGTGTGGGACTCCCAAGAGGAGCTGGTCCATCCTGGCGCGATCATAGATAATAACTTCATCAGTCGATATCGTGAGCCAAGACCGAGGGATGCGCAGCCAGCTCTTCCCATTCCAGAGCAGCCAAAGCATCCAGAGCAGCCTGAGCATCATGAGCAGGAGGTCCCACATCCATCTATTGAGGAGCAGATGCAGCAGATGCGACTCACCATGCAGCATCTTGTGGAGAATCAGCAGCGTCGTTCGGAGGATCACCAGCGCCTTTTCCTGGAGTTCCACCGCCAGCAGCGTCGGGAGCGGTGCCACTTTCTGTATAGTACACGGTTATAG

Coding sequence (CDS)

ATGCCTATGGCGCATCTTAGCGACGTTACAAAGAGTCCCGCCATCCTGCTGTTTGCTATCTCCACAGGTCGCTCAGTGGATGTTGGTCAGGTCATCTTTCGCTCCCTGCGCCATATTCGACATAGGAGCACAACAGTAGGGCTTGGGCCTCCTTCCTTGATCATTGCCCTATGTCGAGTTGCTAGTGTCGTGTGGGACTCCCAAGAGGAGCTGGTCCATCCTGGCGCGATCATAGATAATAACTTCATCAGTCGATATCGTGAGCCAAGACCGAGGGATGCGCAGCCAGCTCTTCCCATTCCAGAGCAGCCAAAGCATCCAGAGCAGCCTGAGCATCATGAGCAGGAGGTCCCACATCCATCTATTGAGGAGCAGATGCAGCAGATGCGACTCACCATGCAGCATCTTGTGGAGAATCAGCAGCGTCGTTCGGAGGATCACCAGCGCCTTTTCCTGGAGTTCCACCGCCAGCAGCGTCGGGAGCGGTGCCACTTTCTGTATAGTACACGGTTATAG

Protein sequence

MPMAHLSDVTKSPAILLFAISTGRSVDVGQVIFRSLRHIRHRSTTVGLGPPSLIIALCRVASVVWDSQEELVHPGAIIDNNFISRYREPRPRDAQPALPIPEQPKHPEQPEHHEQEVPHPSIEEQMQQMRLTMQHLVENQQRRSEDHQRLFLEFHRQQRRERCHFLYSTRL

Homology

[Close]

BLAST of Lcy12g004250 vs. ExPASy TrEMBL
Match: A0A0A0KNI1 (AA_kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G468460 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.1e-16
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1   MPMAHLSDVTKSPAILLFAISTGRSVDVGQVIFRSLRHIRHRSTTVGLGPPSLIIALCRV 60
           +PMAH S VTK  AILL+AI+T RSVDVG+VI +SL +IR    T GLG  SLI ALCR 
Sbjct: 150 LPMAHTSSVTKERAILLYAIATKRSVDVGKVIQKSLCNIRKSGMTGGLGHSSLITALCRN 209

Query: 61  ASVVWDSQEELVHPGAIIDNNFI 84
             VVW+ +EELV P  I+D +FI
Sbjct: 210 EGVVWNEKEELVDPKPIMDKSFI 232

[Close]

BLAST of Lcy12g004250 vs. ExPASy TrEMBL
Match: A0A5D3BBY3 (Putative S-locus lectin protein kinase family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26G00020 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.8e-12
Identity = 65/169 (38.46%), Postives = 89/169 (52.66%), Query Frame = 0


Query: 1   MPMAHLSDVTKSPAILLFAISTGRSVDVGQVIFRSLRHIRHRSTTVGLGPPSLIIALCRV 60
           +P+AH S VTK  AILL+AI+T RSVDVG+VI +SL +IR    T GLG  SLI ALCR 
Sbjct: 179 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRN 238

Query: 61  ASVVWDSQEELVHPGAIIDNNFIS-----RYREPRPRDAQPALPIPEQPKHPEQPEHHEQ 120
             VVW+ +EELV P  I+D NFI       +                  K P+   H E 
Sbjct: 239 EGVVWNEKEELVDPKPIMDKNFIMGIPGWSFETMGAGHCDETAGASHCNKTPDAGHHDE- 298

Query: 121 EVPHPSIEEQMQQMRLTMQHLVENQQRRSEDHQRLFLEFHRQQRRERCH 165
               PS +++ + +R   Q L  +  R+++    L  +  R +RR R +
Sbjct: 299 ----PSDQDEAEPIREVRQTLTIDLPRQTQRPLSLDEQIQRLERRVRSY 342

[Close]

BLAST of Lcy12g004250 vs. ExPASy TrEMBL
Match: A0A1S3C7Y0 (uncharacterized protein LOC103497996 OS=Cucumis melo OX=3656 GN=LOC103497996 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.8e-12
Identity = 65/169 (38.46%), Postives = 89/169 (52.66%), Query Frame = 0


Query: 1   MPMAHLSDVTKSPAILLFAISTGRSVDVGQVIFRSLRHIRHRSTTVGLGPPSLIIALCRV 60
           +P+AH S VTK  AILL+AI+T RSVDVG+VI +SL +IR    T GLG  SLI ALCR 
Sbjct: 117 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRN 176

Query: 61  ASVVWDSQEELVHPGAIIDNNFIS-----RYREPRPRDAQPALPIPEQPKHPEQPEHHEQ 120
             VVW+ +EELV P  I+D NFI       +                  K P+   H E 
Sbjct: 177 EGVVWNEKEELVDPKPIMDKNFIMGIPGWSFETMGAGHCDETAGASHCNKTPDAGHHDE- 236

Query: 121 EVPHPSIEEQMQQMRLTMQHLVENQQRRSEDHQRLFLEFHRQQRRERCH 165
               PS +++ + +R   Q L  +  R+++    L  +  R +RR R +
Sbjct: 237 ----PSDQDEAEPIREVRQTLTIDLPRQTQRPLSLDEQIQRLERRVRSY 280

[Close]

BLAST of Lcy12g004250 vs. ExPASy TrEMBL
Match: A0A061EWF4 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_023809 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-11
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1   MPMAHLSDVTKSPAILLFAISTGRSVDVGQVIFRSLRHIRHRSTTVGLGPPSLIIALCRV 60
           +P+ HLSDVTK  A+LL+AI  G+S+D+GQ+IF S+ H   RS   GL  PS I  LC+ 
Sbjct: 17  LPIKHLSDVTKDRAMLLYAIILGKSIDIGQLIFNSIVHTT-RSIRDGLWYPSFITGLCKQ 76

Query: 61  ASVVWDSQEELVHPGAIIDNNFISRY 87
             + W S EEL+H    +D   I R+
Sbjct: 77  VGLQWTSNEELLHLIVPLDKGIIHRF 101

[Close]

BLAST of Lcy12g004250 vs. ExPASy TrEMBL
Match: A0A061FQE7 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_035608 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 5  HLSDVTKSPAILLFAISTGRSVDVGQVIFRSLRHIRHRSTTVGLGPPSLIIALCRVASVV 64
          HLS+VTK  A+LL+AI +G+S+++GQ+IF +  +I  R    GL  PSLI ALC+ ASV+
Sbjct: 6  HLSNVTKDRAVLLYAILSGKSINIGQLIFNNTIYIA-RLPKDGLWFPSLITALCKQASVL 65

Query: 65 WDSQEELVHPGAIIDNNFISRY 87
          W S +EL+HP   +D + I  +
Sbjct: 66 WTSNKELLHPQVPLDASIIHMF 86

[Close]

BLAST of Lcy12g004250 vs. NCBI nr
Match: KAA0033353.1 (putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa] >TYJ96637.1 putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-11
Identity = 65/169 (38.46%), Postives = 89/169 (52.66%), Query Frame = 0


Query: 1   MPMAHLSDVTKSPAILLFAISTGRSVDVGQVIFRSLRHIRHRSTTVGLGPPSLIIALCRV 60
           +P+AH S VTK  AILL+AI+T RSVDVG+VI +SL +IR    T GLG  SLI ALCR 
Sbjct: 179 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRN 238

Query: 61  ASVVWDSQEELVHPGAIIDNNFIS-----RYREPRPRDAQPALPIPEQPKHPEQPEHHEQ 120
             VVW+ +EELV P  I+D NFI       +                  K P+   H E 
Sbjct: 239 EGVVWNEKEELVDPKPIMDKNFIMGIPGWSFETMGAGHCDETAGASHCNKTPDAGHHDE- 298

Query: 121 EVPHPSIEEQMQQMRLTMQHLVENQQRRSEDHQRLFLEFHRQQRRERCH 165
               PS +++ + +R   Q L  +  R+++    L  +  R +RR R +
Sbjct: 299 ----PSDQDEAEPIREVRQTLTIDLPRQTQRPLSLDEQIQRLERRVRSY 342

[Close]

BLAST of Lcy12g004250 vs. NCBI nr
Match: XP_008458668.1 (PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-11
Identity = 65/169 (38.46%), Postives = 89/169 (52.66%), Query Frame = 0


Query: 1   MPMAHLSDVTKSPAILLFAISTGRSVDVGQVIFRSLRHIRHRSTTVGLGPPSLIIALCRV 60
           +P+AH S VTK  AILL+AI+T RSVDVG+VI +SL +IR    T GLG  SLI ALCR 
Sbjct: 117 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRN 176

Query: 61  ASVVWDSQEELVHPGAIIDNNFIS-----RYREPRPRDAQPALPIPEQPKHPEQPEHHEQ 120
             VVW+ +EELV P  I+D NFI       +                  K P+   H E 
Sbjct: 177 EGVVWNEKEELVDPKPIMDKNFIMGIPGWSFETMGAGHCDETAGASHCNKTPDAGHHDE- 236

Query: 121 EVPHPSIEEQMQQMRLTMQHLVENQQRRSEDHQRLFLEFHRQQRRERCH 165
               PS +++ + +R   Q L  +  R+++    L  +  R +RR R +
Sbjct: 237 ----PSDQDEAEPIREVRQTLTIDLPRQTQRPLSLDEQIQRLERRVRSY 280

[Close]

BLAST of Lcy12g004250 vs. NCBI nr
Match: EOY08722.1 (Uncharacterized protein TCM_023809 [Theobroma cacao])

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-11
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1   MPMAHLSDVTKSPAILLFAISTGRSVDVGQVIFRSLRHIRHRSTTVGLGPPSLIIALCRV 60
           +P+ HLSDVTK  A+LL+AI  G+S+D+GQ+IF S+ H   RS   GL  PS I  LC+ 
Sbjct: 17  LPIKHLSDVTKDRAMLLYAIILGKSIDIGQLIFNSIVHTT-RSIRDGLWYPSFITGLCKQ 76

Query: 61  ASVVWDSQEELVHPGAIIDNNFISRY 87
             + W S EEL+H    +D   I R+
Sbjct: 77  VGLQWTSNEELLHLIVPLDKGIIHRF 101

[Close]

BLAST of Lcy12g004250 vs. NCBI nr
Match: EOY16729.1 (Uncharacterized protein TCM_035608 [Theobroma cacao])

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-10
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 5  HLSDVTKSPAILLFAISTGRSVDVGQVIFRSLRHIRHRSTTVGLGPPSLIIALCRVASVV 64
          HLS+VTK  A+LL+AI +G+S+++GQ+IF +  +I  R    GL  PSLI ALC+ ASV+
Sbjct: 6  HLSNVTKDRAVLLYAILSGKSINIGQLIFNNTIYIA-RLPKDGLWFPSLITALCKQASVL 65

Query: 65 WDSQEELVHPGAIIDNNFISRY 87
          W S +EL+HP   +D + I  +
Sbjct: 66 WTSNKELLHPQVPLDASIIHMF 86

[Close]

BLAST of Lcy12g004250 vs. NCBI nr
Match: EOY19296.1 (Uncharacterized protein TCM_044347 [Theobroma cacao])

HSP 1 Score: 75.9 bits (185), Expect = 3.8e-10
Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 1   MPMAHLSDVTKSPAILLFAISTGRSVDVGQVIFRSLRHIRHRSTTVGLGPPSLIIALCRV 60
           +P  H++DVT+   +L++ I  G+S+++ Q+I  ++ HI  R+   GL  PSLI ALC  
Sbjct: 36  LPSTHINDVTRERGLLIYVIVIGKSINIVQLISNAILHIA-RTNQDGLWFPSLIAALCGR 95

Query: 61  ASVVWDSQEELVHPGAIIDNNFISRYRE-----------PRPRDAQP 97
           A V WD  EEL+H  A ID  FI RY +           PRPR A P
Sbjct: 96  ADVHWDKSEELLHRKAPIDVGFIRRYYDPSIASSNYSSTPRPRAAWP 141

The following BLAST results are available for this feature:

BLAST of Lcy12g004250 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g004250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNI1	5.1e-16	60.24	AA_kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G468460 P...	[more]
A0A5D3BBY3	5.8e-12	38.46	Putative S-locus lectin protein kinase family protein OS=Cucumis melo var. makuw...	[more]
A0A1S3C7Y0	5.8e-12	38.46	uncharacterized protein LOC103497996 OS=Cucumis melo OX=3656 GN=LOC103497996 PE=...	[more]
A0A061EWF4	2.9e-11	46.51	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_023809 PE=4 SV=1	[more]
A0A061FQE7	1.1e-10	47.56	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_035608 PE=4 SV=1	[more]

BLAST of Lcy12g004250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033353.1	1.2e-11	38.46	putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa]...	[more]
XP_008458668.1	1.2e-11	38.46	PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo]	[more]
EOY08722.1	5.9e-11	46.51	Uncharacterized protein TCM_023809 [Theobroma cacao]	[more]
EOY16729.1	2.3e-10	47.56	Uncharacterized protein TCM_035608 [Theobroma cacao]	[more]
EOY19296.1	3.8e-10	41.12	Uncharacterized protein TCM_044347 [Theobroma cacao]	[more]

BLAST of Lcy12g004250 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g004250.1	Lcy12g004250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901564	organonitrogen compound metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding
molecular_function	GO:0004672	protein kinase activity