Lcy12g004160 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g004160
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr12: 14172005 .. 14172300 (+)
RNA-Seq Expression	Lcy12g004160
Synteny	Lcy12g004160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATAGGCAAAACAAGTCTCACTCTTCCTTCTCAATCTTTGGCCGCCTTTTCAAATCCAAAAGAAATAGAAAAGAAGATTATTATAACCGTGACGGTTACCAGAACGAAGTATCGTATCCAGACAAAGTATTGTTGAGTGATGAAGAAAGTGTTCACCATTGGATTATCAAGCGTGATATTGATAGGAAAGCTAAAGATTATATTGATAAGTTCTATGAAAAGCATGACTTAAAAACTGAGCATGTCTTATTGCCGAGTGATAAGAAAAGTGCTCAGCATCAAATTCTCGA

mRNA sequence

ATGGGAGATAGGCAAAACAAGTCTCACTCTTCCTTCTCAATCTTTGGCCGCCTTTTCAAATCCAAAAGAAATAGAAAAGAAGATTATTATAACCGTGACGGTTACCAGAACGAAGTATCGTATCCAGACAAAGTATTGTTGAGTGATGAAGAAAGTGTTCACCATTGGATTATCAAGCGTGATATTGATAGGAAAGCTAAAGATTATATTGATAAGTTCTATGAAAAGCATGACTTAAAAACTGAGCATGTCTTATTGCCGAGTGATAAGAAAAGTGCTCAGCATCAAATTCTCGA

Coding sequence (CDS)

ATGGGAGATAGGCAAAACAAGTCTCACTCTTCCTTCTCAATCTTTGGCCGCCTTTTCAAATCCAAAAGAAATAGAAAAGAAGATTATTATAACCGTGACGGTTACCAGAACGAAGTATCGTATCCAGACAAAGTATTGTTGAGTGATGAAGAAAGTGTTCACCATTGGATTATCAAGCGTGATATTGATAGGAAAGCTAAAGATTATATTGATAAGTTCTATGAAAAGCATGACTTAAAAACTGAGCATGTCTTATTGCCGAGTGATAAGAAAAGTGCTCAGCATCAAATTCTCGA

Protein sequence

MGDRQNKSHSSFSIFGRLFKSKRNRKEDYYNRDGYQNEVSYPDKVLLSDEESVHHWIIKRDIDRKAKDYIDKFYEKHDLKTEHVLLPSDKKSAQHQIL

Homology

[Close]

BLAST of Lcy12g004160 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 2  GDRQNKSHSSFSIFGRLFKSKRNRKEDYYNRDG-YQNEVSYPDKVLLSDEESVHHWIIKR 61
          G+RQ KSHSSFSIF   FKSKR RK D+Y+  G + +E+   +KV  SDE+  HHWI + 
Sbjct: 3  GNRQKKSHSSFSIFS-FFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 62

Query: 62 DIDRKAKDYIDKFYEKHDLKTEH---VLLPSDKKS 93
           IDRKAKDYID+ Y     ++E     + P+  KS
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKS 96

[Close]

BLAST of Lcy12g004160 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.4e-12
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 2  GDRQNKSHSSFSIFGRLFKSKRNRKEDYYNRDG-YQNEVSYPDKVLLSDEESVHHWIIKR 61
          G+RQ KSHSSFSIF   FKS+R RK D+Y+  G + +E+   +KV  SDE+  HHW+ + 
Sbjct: 3  GNRQKKSHSSFSIFS-FFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 62

Query: 62 DIDRKAKDYIDKFYEKHDLKTEH---VLLPSDKKS 93
           IDRKAKDYID+ Y     ++E     + P+  KS
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKS 96

[Close]

BLAST of Lcy12g004160 vs. ExPASy TrEMBL
Match: A0A5A7SYN4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00380 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.3e-10
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 2  GDRQNKSHSSFSIFGRLFKSKRNRKEDYYNRDG-YQNEVSYPDKVLLSDEESVHHWIIKR 61
          G +  KSHSSFS F   FKSK ++KED+Y+  G + ++ S   KV  SDE+  HHW+ + 
Sbjct: 3  GHKHKKSHSSFSFFS-FFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAEP 62

Query: 62 DIDRKAKDYIDKFYEKHDLKTEH--VLLPSD 90
           IDRKAKDYID+ Y     ++E   V +P++
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of Lcy12g004160 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 3  DRQNKSHSSFSIFGRLFKSKRNRKEDYYNRDG-YQNEVSYPDKVLLSDEESVHHWIIKRD 62
          +RQ KSHSSFSIF   FKS+R RK D  N  G   +E+    KV  SDE+  HHW+ +  
Sbjct: 5  NRQKKSHSSFSIFS-FFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEPG 64

Query: 63 IDRKAKDYIDKFYEKHDLKTEH---VLLPSDKKS 93
          IDRKAKDYID+ Y     ++E     + P+  KS
Sbjct: 65 IDRKAKDYIDRIYRNRVFESERQTITISPNGTKS 97

[Close]

BLAST of Lcy12g004160 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 3  DRQNKSHSSFSIFGRLFKSKRNRKEDYYNRDG-YQNEVSYPDKVLLSDEESVHHWIIKRD 62
          +RQ K+H+SFSIF   FKS+R RK D+ N  G   +E+    KV  SDE+  HHW+ +  
Sbjct: 5  NRQKKAHASFSIFS-FFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEPG 64

Query: 63 IDRKAKDYIDKFYEKHDLKTE 83
          IDRKAKDYID+ Y     ++E
Sbjct: 65 IDRKAKDYIDRIYRNRVFESE 84

[Close]

BLAST of Lcy12g004160 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 4.0e-12
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 2  GDRQNKSHSSFSIFGRLFKSKRNRKEDYYNRDG-YQNEVSYPDKVLLSDEESVHHWIIKR 61
          G+RQ KSHSSFSIF   FKSKR RK D+Y+  G + +E+   +KV  SDE+  HHWI + 
Sbjct: 3  GNRQKKSHSSFSIFS-FFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 62

Query: 62 DIDRKAKDYIDKFYEKHDLKTEH---VLLPSDKKS 93
           IDRKAKDYID+ Y     ++E     + P+  KS
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKS 96

[Close]

BLAST of Lcy12g004160 vs. NCBI nr
Match: KAG6592311.1 (hypothetical protein SDJN03_14657, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 5.3e-12
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 3  DRQNKSHSSFSIFGRLFKSKRNRKEDYYNRDGYQNEVSYPDKVLLSDEESVHHWIIKRDI 62
          +R  KSHSSFSIF   FK ++ RKED+Y+  GY NE+    KV  SDE+  H W+ +  I
Sbjct: 5  NRSKKSHSSFSIF-NFFKFRKGRKEDHYDHGGYWNEMPRSGKVWPSDEDKTHRWVAEPGI 64

Query: 63 DRKAKDYIDKFYEKHDLKTEH--VLLPSD 90
          DRKAKDYIDK Y     ++E   V LP++
Sbjct: 65 DRKAKDYIDKIYRNRIFESERQTVTLPAN 92

[Close]

BLAST of Lcy12g004160 vs. NCBI nr
Match: KAG6592313.1 (hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 5.3e-12
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 3  DRQNKSHSSFSIFGRLFKSKRNRKEDYYNRDGYQNEVSYPDKVLLSDEESVHHWIIKRDI 62
          +R  KSHSSFSIF   FK ++ RKED+Y+  GY NE+    KV  SDE+  H W+ +  I
Sbjct: 5  NRSKKSHSSFSIF-NFFKFRKGRKEDHYDHGGYWNEMPRSGKVWPSDEDKTHRWVAEPGI 64

Query: 63 DRKAKDYIDKFYEKHDLKTEH--VLLPSD 90
          DRKAKDYIDK Y     ++E   V LP++
Sbjct: 65 DRKAKDYIDKIYRNRIFESERQTVTLPAN 92

[Close]

BLAST of Lcy12g004160 vs. NCBI nr
Match: KAG6592307.1 (hypothetical protein SDJN03_14653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-11
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 3  DRQNKSHSSFSIFGRLFKSKRNRKEDYYNRDGYQNEVSYPDKVLLSDEESVHHWIIKRDI 62
          +R  K+HSSFSIF   FK +R RKED+ +  GY +E+    KV  SDE+  H W+ +  I
Sbjct: 5  NRSKKAHSSFSIF-NFFKFRRGRKEDHCDHSGYWDEMPRSSKVWPSDEDKAHRWVAEPGI 64

Query: 63 DRKAKDYIDKFYEKHDLKTEH--VLLPS 89
          DRKAKDYIDK Y  H  ++E   V LP+
Sbjct: 65 DRKAKDYIDKIYRNHVFQSERQTVTLPA 91

[Close]

BLAST of Lcy12g004160 vs. NCBI nr
Match: KAG6592309.1 (hypothetical protein SDJN03_14655, partial [Cucurbita argyrosperma subsp. sororia] >KAG6592312.1 hypothetical protein SDJN03_14658, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 4.4e-11
Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 3  DRQNKSHSSFSIFGRLFKSKRNRKEDYYNRDGYQNEVSYPDKVLLSDEESVHHWIIKRDI 62
          ++  KSHSSFSIF   FK ++ RKED+Y+  GY N++    KV  SDE+  H W+ +  I
Sbjct: 5  NQSKKSHSSFSIF-NFFKFRKGRKEDHYDHGGYWNKMPRSGKVWPSDEDKTHRWVAEPGI 64

Query: 63 DRKAKDYIDKFYEKHDLKTEH--VLLPSD 90
          DRKAKDYIDK Y     ++E   V LP++
Sbjct: 65 DRKAKDYIDKIYRNRIFESERQTVTLPAN 92

The following BLAST results are available for this feature:

BLAST of Lcy12g004160 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g004160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Y2	1.9e-12	49.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	7.4e-12	47.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A5A7SYN4	5.3e-10	45.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SWT9	1.2e-09	46.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KAK6	2.6e-09	48.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]

BLAST of Lcy12g004160 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45870.1	4.0e-12	49.47	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAG6592311.1	5.3e-12	49.44	hypothetical protein SDJN03_14657, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592313.1	5.3e-12	49.44	hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592307.1	2.0e-11	48.86	hypothetical protein SDJN03_14653, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592309.1	4.4e-11	47.19	hypothetical protein SDJN03_14655, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy12g004160 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 2..82
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 2..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g004160.1	Lcy12g004160.1	mRNA