Lcy12g003490 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g003490
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	GATA transcription factor 15-like
Location	Chr12: 10717945 .. 10718509 (+)
RNA-Seq Expression	Lcy12g003490
Synteny	Lcy12g003490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCTTCGTGAACCACCCCGATCTCTCTGGCTCCACCTTCAATCCATCGCTAATGGCCATCTCGAGCCAGGGTCTAGTCGGTATCGAGCCTCAGAAACAGAGGGTCTGCGTCGACTGTCGCACCACCAGAACCCCCCTTTGGAGAATCGGTCCTGCCGGCCCAAGGGTAACTATATATTCTTACTCCTTTTCTTTCAACAAGAGATTTTATGTAAAAACATTTGTAATTTTATTTAATCTTTTGGTGATTAGAAATTTGGTTTAAAATGTTGTTGGTAATTTTGATTCATTTCTGGGTTTATTGTTGTTGACAGTCGCTGTGCAATGCATGTGGGATAAGATACAAGAAGCTAAAGAACAATGGTGGAGTGATCAAGAACGGGAAGGGGAAGAAAGTGGGAGGAGGATCGTTGAAGGTGAGAGTGATGGGTTTTGGGAGAGAGATAGTGCTACACAGAGCGACGACGATGGCGGAAAATGGAGTTGCAGAGTCAATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCGTGGCTTTATCTTCCAGCTATGTATCATAA

mRNA sequence

ATGGCCTTCTTCGTGAACCACCCCGATCTCTCTGGCTCCACCTTCAATCCATCGCTAATGGCCATCTCGAGCCAGGGTCTAGTCGGTATCGAGCCTCAGAAACAGAGGGTCTGCGTCGACTGTCGCACCACCAGAACCCCCCTTTGGAGAATCGGTCCTGCCGGCCCAAGGTCGCTGTGCAATGCATGTGGGATAAGATACAAGAAGCTAAAGAACAATGGTGGAGTGATCAAGAACGGGAAGGGGAAGAAAGTGGGAGGAGGATCGTTGAAGGTGAGAGTGATGGGTTTTGGGAGAGAGATAGTGCTACACAGAGCGACGACGATGGCGGAAAATGGAGTTGCAGAGTCAATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCGTGGCTTTATCTTCCAGCTATGTATCATAA

Coding sequence (CDS)

ATGGCCTTCTTCGTGAACCACCCCGATCTCTCTGGCTCCACCTTCAATCCATCGCTAATGGCCATCTCGAGCCAGGGTCTAGTCGGTATCGAGCCTCAGAAACAGAGGGTCTGCGTCGACTGTCGCACCACCAGAACCCCCCTTTGGAGAATCGGTCCTGCCGGCCCAAGGTCGCTGTGCAATGCATGTGGGATAAGATACAAGAAGCTAAAGAACAATGGTGGAGTGATCAAGAACGGGAAGGGGAAGAAAGTGGGAGGAGGATCGTTGAAGGTGAGAGTGATGGGTTTTGGGAGAGAGATAGTGCTACACAGAGCGACGACGATGGCGGAAAATGGAGTTGCAGAGTCAATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCGTGGCTTTATCTTCCAGCTATGTATCATAA

Protein sequence

MAFFVNHPDLSGSTFNPSLMAISSQGLVGIEPQKQRVCVDCRTTRTPLWRIGPAGPRSLCNACGIRYKKLKNNGGVIKNGKGKKVGGGSLKVRVMGFGREIVLHRATTMAENGVAESIGEEEQAAAMLLVALSSSYVS

Homology

[Close]

BLAST of Lcy12g003490 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 53/107 (49.53%), Postives = 69/107 (64.49%), Query Frame = 0


Query: 34  KQRVCVDCRTTRTPLWRIGPAGPRSLCNACGIRYKK----LKNNGGVIKNGKGKKVG--- 93
           +++ C  C T++TPLWR GPAGP+SLCNACGIR +K    L +N    K  K        
Sbjct: 39  EKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNPKF 98

Query: 94  GGSLKVRVMGFGREIVLHRATTMAENGVAESIGEEEQAAAMLLVALS 134
           G SLK R+M  GRE+++ R+T  AEN     +GEEEQ AA+LL+ALS
Sbjct: 99  GDSLKQRLMELGREVMMQRST--AENQRRNKLGEEEQ-AAVLLMALS 142

[Close]

BLAST of Lcy12g003490 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.8e-14
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 34  KQRVCVDCRTTRTPLWRIGPAGPRSLCNACGIRYKKLKNNGGVIKNGKGKK--VGGG--- 93
           K++ C DC T++TPLWR GP GP+SLCNACGIR +K K  GG   N K KK   GGG   
Sbjct: 34  KKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRK-KRRGGTEDNKKLKKSSSGGGNRK 93

Query: 94  ---SLKVRVMGFGREIVLHRATTMAENGVAESIGEEEQAAAMLLVALS 134
              SLK  +M  G   +  R+T   +    + +GEEEQ AA+LL+ALS
Sbjct: 94  FGESLKQSLMDLG---IRKRSTVEKQR---QKLGEEEQ-AAVLLMALS 133

[Close]

BLAST of Lcy12g003490 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 36  RVCVDCRTTRTPLWRIGPAGPRSLCNACGIRYKKLKNNGGVIKNG 81
           RVC DC TT+TPLWR GP GP+SLCNACGIR +K +       NG
Sbjct: 176 RVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKARRAMAAAANG 220

[Close]

BLAST of Lcy12g003490 vs. ExPASy Swiss-Prot
Match: Q5HZ36 (GATA transcription factor 21 OS=Arabidopsis thaliana OX=3702 GN=GATA21 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-10
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 36  RVCVDCRTTRTPLWRIGPAGPRSLCNACGIRYKKLK 72
           RVC DC TT+TPLWR GP GP+SLCNACGIR +K +
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 265

[Close]

BLAST of Lcy12g003490 vs. ExPASy Swiss-Prot
Match: Q9SZI6 (Putative GATA transcription factor 22 OS=Arabidopsis thaliana OX=3702 GN=GATA22 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-10
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 36  RVCVDCRTTRTPLWRIGPAGPRSLCNACGIRYKKLK 72
           R+C DC TT+TPLWR GP GP+SLCNACGIR +K +
Sbjct: 199 RICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 234

[Close]

BLAST of Lcy12g003490 vs. ExPASy TrEMBL
Match: A0A6J1KR45 (GATA transcription factor 15-like OS=Cucurbita maxima OX=3661 GN=LOC111497907 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 9.0e-48
Identity = 110/142 (77.46%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 1   MAFFV-NHPDLSGSTFNP-SLMAISSQGLVGIEPQKQRVCVDCRTTRTPLWRIGPAGPRS 60
           MAFF+ NHPDLSGSTFNP SLMAIS+QGL+  EPQKQR C  CRTTRTPLWR GPAGPRS
Sbjct: 1   MAFFINNHPDLSGSTFNPSSLMAISNQGLLCTEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60

Query: 61  LCNACGIRYKKLK-NNGGVIKNGKGKKVGGGSLKVRVMGFGREIVLHRAT-TMAENGVAE 120
           LCNACGIRY+KLK NNGGV K+G GKKV      VRV+G GREI+LHR T  MAENG AE
Sbjct: 61  LCNACGIRYRKLKNNNGGVNKSGNGKKV------VRVVGLGREIMLHRTTAAMAENGGAE 120

Query: 121 SIGEEEQAAAMLLVALSSSYVS 139
           +IGEEEQAAAMLL+ALSS YVS
Sbjct: 121 TIGEEEQAAAMLLMALSSGYVS 136

[Close]

BLAST of Lcy12g003490 vs. ExPASy TrEMBL
Match: A0A6J1H9M3 (GATA transcription factor 15-like OS=Cucurbita moschata OX=3662 GN=LOC111460872 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 9.0e-48
Identity = 111/142 (78.17%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 1   MAFFV-NHPDLSGSTFNP-SLMAISSQGLVGIEPQKQRVCVDCRTTRTPLWRIGPAGPRS 60
           MAFF+ NHPDLSGSTFNP SLMAIS+QGL+ IEPQKQR C  CRTTRTPLWR GPAGPRS
Sbjct: 1   MAFFINNHPDLSGSTFNPSSLMAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60

Query: 61  LCNACGIRYKKLKN-NGGVIKNGKGKKVGGGSLKVRVMGFGREIVLHRAT-TMAENGVAE 120
           LCNACGIRY+KLKN NGGV K+  GKKV      VRV+G GREI+LHRAT  MAENG AE
Sbjct: 61  LCNACGIRYRKLKNSNGGVNKSVNGKKV------VRVVGLGREIMLHRATAAMAENGGAE 120

Query: 121 SIGEEEQAAAMLLVALSSSYVS 139
           +IGEEEQAAAMLL+ALSS YVS
Sbjct: 121 TIGEEEQAAAMLLMALSSGYVS 136

[Close]

BLAST of Lcy12g003490 vs. ExPASy TrEMBL
Match: A0A5A7TUD0 (GATA transcription factor 15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001480 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 6.3e-41
Identity = 101/154 (65.58%), Postives = 115/154 (74.68%), Query Frame = 0


Query: 1   MAFFVNH-PDLSGSTFNPSLM-AISSQGLVGIEPQKQRVCVDCRTTRTPLWRIGPAGPRS 60
           MAF +N   D S STFNPSLM A+S QGL  +E +KQR CV CR TRTPLWR GPAGPRS
Sbjct: 13  MAFLMNRAADHSPSTFNPSLMTAVSEQGLFELEAEKQRACVHCRATRTPLWRAGPAGPRS 72

Query: 61  LCNACGIRYKKLK---NNGGVIKN--------GKGKKV-GGGSLKVRVMGFGREIVLHR- 120
           LCNACGIRY+K+K   NN G + N        GKGKK+ GGGSLK+RV+  GREI++HR 
Sbjct: 73  LCNACGIRYRKMKMNSNNDGEVNNNNNNNNKMGKGKKMGGGGSLKLRVVRLGREIMVHRR 132

Query: 121 -ATTMAENGVAESIGEEEQAAAMLLVALSSSYVS 139
             T M +NGVAESIGEEEQ AAMLL+ALSS YVS
Sbjct: 133 PTTAMEDNGVAESIGEEEQTAAMLLMALSSGYVS 166

[Close]

BLAST of Lcy12g003490 vs. ExPASy TrEMBL
Match: A0A1S3BSR7 (GATA transcription factor 15-like OS=Cucumis melo OX=3656 GN=LOC103492777 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.8e-40
Identity = 101/158 (63.92%), Postives = 115/158 (72.78%), Query Frame = 0


Query: 1   MAFFVNH-PDLSGSTFNPSLM-AISSQGLVGIEPQKQRVCVDCRTTRTPLWRIGPAGPRS 60
           MAF +N   D S STFNPSLM A+S QGL  +E +KQR CV CR TRTPLWR GPAGPRS
Sbjct: 13  MAFLMNRAADHSPSTFNPSLMTAVSEQGLFELEAEKQRACVHCRATRTPLWRAGPAGPRS 72

Query: 61  LCNACGIRYKKLK---NNGGVIKN------------GKGKKV-GGGSLKVRVMGFGREIV 120
           LCNACGIRY+K+K   NN G + N            GKGKK+ GGGSLK+RV+  GREI+
Sbjct: 73  LCNACGIRYRKMKMNSNNDGEVNNNNNNNNNNNNKMGKGKKMGGGGSLKLRVVRLGREIM 132

Query: 121 LHR--ATTMAENGVAESIGEEEQAAAMLLVALSSSYVS 139
           +HR   T M +NGVAESIGEEEQ AAMLL+ALSS YVS
Sbjct: 133 VHRRPTTAMEDNGVAESIGEEEQTAAMLLMALSSGYVS 170

[Close]

BLAST of Lcy12g003490 vs. ExPASy TrEMBL
Match: A0A0A0K6B1 (GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G405980 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.2e-39
Identity = 101/153 (66.01%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 1   MAFFVNH-PDLSGSTFN-PSLM-AISSQGLVGIEPQKQRVCVDCRTTRTPLWRIGPAGPR 60
           +AF +N   DLS STFN PSLM A+S +GL+ +E +KQR CV CR TRTPLWR GPAGPR
Sbjct: 17  IAFLMNRAADLSASTFNPPSLMTAVSKEGLLELEAEKQRACVHCRATRTPLWRAGPAGPR 76

Query: 61  SLCNACGIRYKKLK----NNGGVIKN-----GKGKKVG--GGSLKVRVMGFGREIVLHRA 120
           SLCNACGIRY+K+K    NNGGV  N     GKGKK+G  GGSLKVRV+  GREI++HR 
Sbjct: 77  SLCNACGIRYRKMKMNSNNNGGVNNNSNNKMGKGKKMGGSGGSLKVRVVRLGREIMVHRP 136

Query: 121 TTMAE--NGVAESIGEEEQAAAMLLVALSSSYV 138
           TT  E  N VAESIGEEEQ AA+LL+ALSS YV
Sbjct: 137 TTAMEDDNEVAESIGEEEQTAALLLMALSSGYV 169

[Close]

BLAST of Lcy12g003490 vs. NCBI nr
Match: XP_022959984.1 (GATA transcription factor 15-like [Cucurbita moschata] >KAG6593223.1 GATA transcription factor 15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030201.1 GATA transcription factor 15, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-47
Identity = 111/142 (78.17%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 1   MAFFV-NHPDLSGSTFNP-SLMAISSQGLVGIEPQKQRVCVDCRTTRTPLWRIGPAGPRS 60
           MAFF+ NHPDLSGSTFNP SLMAIS+QGL+ IEPQKQR C  CRTTRTPLWR GPAGPRS
Sbjct: 1   MAFFINNHPDLSGSTFNPSSLMAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60

Query: 61  LCNACGIRYKKLKN-NGGVIKNGKGKKVGGGSLKVRVMGFGREIVLHRAT-TMAENGVAE 120
           LCNACGIRY+KLKN NGGV K+  GKKV      VRV+G GREI+LHRAT  MAENG AE
Sbjct: 61  LCNACGIRYRKLKNSNGGVNKSVNGKKV------VRVVGLGREIMLHRATAAMAENGGAE 120

Query: 121 SIGEEEQAAAMLLVALSSSYVS 139
           +IGEEEQAAAMLL+ALSS YVS
Sbjct: 121 TIGEEEQAAAMLLMALSSGYVS 136

[Close]

BLAST of Lcy12g003490 vs. NCBI nr
Match: XP_023004687.1 (GATA transcription factor 15-like [Cucurbita maxima])

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-47
Identity = 110/142 (77.46%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 1   MAFFV-NHPDLSGSTFNP-SLMAISSQGLVGIEPQKQRVCVDCRTTRTPLWRIGPAGPRS 60
           MAFF+ NHPDLSGSTFNP SLMAIS+QGL+  EPQKQR C  CRTTRTPLWR GPAGPRS
Sbjct: 1   MAFFINNHPDLSGSTFNPSSLMAISNQGLLCTEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60

Query: 61  LCNACGIRYKKLK-NNGGVIKNGKGKKVGGGSLKVRVMGFGREIVLHRAT-TMAENGVAE 120
           LCNACGIRY+KLK NNGGV K+G GKKV      VRV+G GREI+LHR T  MAENG AE
Sbjct: 61  LCNACGIRYRKLKNNNGGVNKSGNGKKV------VRVVGLGREIMLHRTTAAMAENGGAE 120

Query: 121 SIGEEEQAAAMLLVALSSSYVS 139
           +IGEEEQAAAMLL+ALSS YVS
Sbjct: 121 TIGEEEQAAAMLLMALSSGYVS 136

[Close]

BLAST of Lcy12g003490 vs. NCBI nr
Match: XP_023515141.1 (GATA transcription factor 15-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.4 bits (503), Expect = 4.2e-47
Identity = 110/142 (77.46%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 1   MAFFV-NHPDLSGSTFNP-SLMAISSQGLVGIEPQKQRVCVDCRTTRTPLWRIGPAGPRS 60
           MAFF+ NHPDLSGSTFNP SLMAIS+ GL+ IEPQKQR C  CRTTRTPLWR GPAGPRS
Sbjct: 1   MAFFINNHPDLSGSTFNPSSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60

Query: 61  LCNACGIRYKKLKN-NGGVIKNGKGKKVGGGSLKVRVMGFGREIVLHRAT-TMAENGVAE 120
           LCNACGIRY+KLKN NGGV K+G GKKV      VRV+  GREI+LHRAT  MAENG AE
Sbjct: 61  LCNACGIRYRKLKNSNGGVNKSGNGKKV------VRVVDLGREIMLHRATAAMAENGGAE 120

Query: 121 SIGEEEQAAAMLLVALSSSYVS 139
           +IGEEEQAAAMLL+ALSS YVS
Sbjct: 121 TIGEEEQAAAMLLMALSSGYVS 136

[Close]

BLAST of Lcy12g003490 vs. NCBI nr
Match: KAA0046674.1 (GATA transcription factor 15-like [Cucumis melo var. makuwa] >TYK18209.1 GATA transcription factor 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-40
Identity = 101/154 (65.58%), Postives = 115/154 (74.68%), Query Frame = 0


Query: 1   MAFFVNH-PDLSGSTFNPSLM-AISSQGLVGIEPQKQRVCVDCRTTRTPLWRIGPAGPRS 60
           MAF +N   D S STFNPSLM A+S QGL  +E +KQR CV CR TRTPLWR GPAGPRS
Sbjct: 13  MAFLMNRAADHSPSTFNPSLMTAVSEQGLFELEAEKQRACVHCRATRTPLWRAGPAGPRS 72

Query: 61  LCNACGIRYKKLK---NNGGVIKN--------GKGKKV-GGGSLKVRVMGFGREIVLHR- 120
           LCNACGIRY+K+K   NN G + N        GKGKK+ GGGSLK+RV+  GREI++HR 
Sbjct: 73  LCNACGIRYRKMKMNSNNDGEVNNNNNNNNKMGKGKKMGGGGSLKLRVVRLGREIMVHRR 132

Query: 121 -ATTMAENGVAESIGEEEQAAAMLLVALSSSYVS 139
             T M +NGVAESIGEEEQ AAMLL+ALSS YVS
Sbjct: 133 PTTAMEDNGVAESIGEEEQTAAMLLMALSSGYVS 166

[Close]

BLAST of Lcy12g003490 vs. NCBI nr
Match: XP_008451515.1 (PREDICTED: GATA transcription factor 15-like [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 3.8e-40
Identity = 101/158 (63.92%), Postives = 115/158 (72.78%), Query Frame = 0


Query: 1   MAFFVNH-PDLSGSTFNPSLM-AISSQGLVGIEPQKQRVCVDCRTTRTPLWRIGPAGPRS 60
           MAF +N   D S STFNPSLM A+S QGL  +E +KQR CV CR TRTPLWR GPAGPRS
Sbjct: 13  MAFLMNRAADHSPSTFNPSLMTAVSEQGLFELEAEKQRACVHCRATRTPLWRAGPAGPRS 72

Query: 61  LCNACGIRYKKLK---NNGGVIKN------------GKGKKV-GGGSLKVRVMGFGREIV 120
           LCNACGIRY+K+K   NN G + N            GKGKK+ GGGSLK+RV+  GREI+
Sbjct: 73  LCNACGIRYRKMKMNSNNDGEVNNNNNNNNNNNNKMGKGKKMGGGGSLKLRVVRLGREIM 132

Query: 121 LHR--ATTMAENGVAESIGEEEQAAAMLLVALSSSYVS 139
           +HR   T M +NGVAESIGEEEQ AAMLL+ALSS YVS
Sbjct: 133 VHRRPTTAMEDNGVAESIGEEEQTAAMLLMALSSGYVS 170

[Close]

BLAST of Lcy12g003490 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 84.3 bits (207), Expect = 8.1e-17
Identity = 53/107 (49.53%), Postives = 69/107 (64.49%), Query Frame = 0


Query: 34  KQRVCVDCRTTRTPLWRIGPAGPRSLCNACGIRYKK----LKNNGGVIKNGKGKKVG--- 93
           +++ C  C T++TPLWR GPAGP+SLCNACGIR +K    L +N    K  K        
Sbjct: 39  EKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNPKF 98

Query: 94  GGSLKVRVMGFGREIVLHRATTMAENGVAESIGEEEQAAAMLLVALS 134
           G SLK R+M  GRE+++ R+T  AEN     +GEEEQ AA+LL+ALS
Sbjct: 99  GDSLKQRLMELGREVMMQRST--AENQRRNKLGEEEQ-AAVLLMALS 142

[Close]

BLAST of Lcy12g003490 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-15
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 34  KQRVCVDCRTTRTPLWRIGPAGPRSLCNACGIRYKKLKNNGGVIKNGKGKK--VGGG--- 93
           K++ C DC T++TPLWR GP GP+SLCNACGIR +K K  GG   N K KK   GGG   
Sbjct: 34  KKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRK-KRRGGTEDNKKLKKSSSGGGNRK 93

Query: 94  ---SLKVRVMGFGREIVLHRATTMAENGVAESIGEEEQAAAMLLVALS 134
              SLK  +M  G   +  R+T   +    + +GEEEQ AA+LL+ALS
Sbjct: 94  FGESLKQSLMDLG---IRKRSTVEKQR---QKLGEEEQ-AAVLLMALS 133

[Close]

BLAST of Lcy12g003490 vs. TAIR 10
Match: AT5G56860.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-11
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 36  RVCVDCRTTRTPLWRIGPAGPRSLCNACGIRYKKLK 72
           RVC DC TT+TPLWR GP GP+SLCNACGIR +K +
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 265

[Close]

BLAST of Lcy12g003490 vs. TAIR 10
Match: AT4G26150.1 (cytokinin-responsive gata factor 1 )

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-11
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 36  RVCVDCRTTRTPLWRIGPAGPRSLCNACGIRYKKLK 72
           R+C DC TT+TPLWR GP GP+SLCNACGIR +K +
Sbjct: 199 RICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 234

[Close]

BLAST of Lcy12g003490 vs. TAIR 10
Match: AT4G36620.1 (GATA transcription factor 19 )

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-11
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 36  RVCVDCRTTRTPLWRIGPAGPRSLCNACGIRYKKLKNNGGVIKNGKGKKVGGGS 90
           R C +C TT TPLWR GP GP+SLCNACGIR+KK +      +N      GGGS
Sbjct: 75  RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASTARNSTS---GGGS 125

The following BLAST results are available for this feature:

BLAST of Lcy12g003490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LG10	1.1e-15	49.53	GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2	[more]
Q9FJ10	2.8e-14	49.07	GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1	[more]
Q6YW48	1.1e-10	62.22	Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. ...	[more]
Q5HZ36	2.5e-10	72.22	GATA transcription factor 21 OS=Arabidopsis thaliana OX=3702 GN=GATA21 PE=1 SV=2	[more]
Q9SZI6	3.2e-10	69.44	Putative GATA transcription factor 22 OS=Arabidopsis thaliana OX=3702 GN=GATA22 ...	[more]

BLAST of Lcy12g003490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KR45	9.0e-48	77.46	GATA transcription factor 15-like OS=Cucurbita maxima OX=3661 GN=LOC111497907 PE...	[more]
A0A6J1H9M3	9.0e-48	78.17	GATA transcription factor 15-like OS=Cucurbita moschata OX=3662 GN=LOC111460872 ...	[more]
A0A5A7TUD0	6.3e-41	65.58	GATA transcription factor 15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BSR7	1.8e-40	63.92	GATA transcription factor 15-like OS=Cucumis melo OX=3656 GN=LOC103492777 PE=4 S...	[more]
A0A0A0K6B1	1.2e-39	66.01	GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G405980 P...	[more]

BLAST of Lcy12g003490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959984.1	1.9e-47	78.17	GATA transcription factor 15-like [Cucurbita moschata] >KAG6593223.1 GATA transc...	[more]
XP_023004687.1	1.9e-47	77.46	GATA transcription factor 15-like [Cucurbita maxima]	[more]
XP_023515141.1	4.2e-47	77.46	GATA transcription factor 15-like [Cucurbita pepo subsp. pepo]	[more]
KAA0046674.1	1.3e-40	65.58	GATA transcription factor 15-like [Cucumis melo var. makuwa] >TYK18209.1 GATA tr...	[more]
XP_008451515.1	3.8e-40	63.92	PREDICTED: GATA transcription factor 15-like [Cucumis melo]	[more]

BLAST of Lcy12g003490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06740.1	8.1e-17	49.53	GATA transcription factor 15	[more]
AT5G49300.1	2.0e-15	49.07	GATA transcription factor 16	[more]
AT5G56860.1	1.8e-11	72.22	GATA type zinc finger transcription factor family protein	[more]
AT4G26150.1	2.3e-11	69.44	cytokinin-responsive gata factor 1	[more]
AT4G36620.1	5.1e-11	55.56	GATA transcription factor 19	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 32..83 e-value: 3.3E-13 score: 59.9
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 38..70 e-value: 1.2E-15 score: 56.7
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 32..68 score: 12.914198
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 37..69 e-value: 1.63881E-14 score: 61.6198
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 33..101 e-value: 1.3E-16 score: 62.4
None	No IPR available	PANTHER	PTHR47172:SF9	GATA TRANSCRIPTION FACTOR 16	coord: 33..78
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 80..137
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 33..78
None	No IPR available	PANTHER	PTHR47172:SF9	GATA TRANSCRIPTION FACTOR 16	coord: 80..137
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 32..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g003490.1	Lcy12g003490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding