Lcy12g003190 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g003190
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionProteasome subunit beta
LocationChr12: 9499841 .. 9502332 (+)
RNA-Seq ExpressionLcy12g003190
SyntenyLcy12g003190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTCGATACCAGTGGTCTTCAAACAACTGCTCTGCTGTTTGGGCAAAAAATGGAGATGCTGGAAGGGTTTTCTGCTGTTCCATCCTTTGAGATCCCTAATTCCAGTGACGTAACTTGTAAATCATTTATCCATAATACTTTCTGGATTGCATACTGTTTTGTTGAATTGCCTTTCTGACTTTGATTATTTTCTCCATATTTCAATTTGATGGCTTTTCAGAAAGAAGCCATTCAGATGGTGAAAAGCCAGCGAAATGAACCACGACACTTTCATTTTTAAGGAAGGAGTCATGGTTGTTGATTCACGTGCCGGGGAGGCTATATATGTATGTTTACTTTATTTCATGTGTTCTTCAAAAAAATTTAAGATTTAAGATTCACGTGCCAGCAAAAGGAACCAAAAGATGTTTGTTTTATTTTGTTCAGTCTCAATTCCAAAATGTTGTTGGAATGTGAAATTTTGAAGAGTAATTAGTAATATTGGTATTTTCTTTATGCTCATGGTGATTTAATGGTTATTCTTGCAAGTTGGTTTATCACTGATGTGCATTTGTGATAACTTCATGTTTAGTACTCTGTTCTAGATTGAGTTTGGTGGTTTTGGCTATTGGTTATTTCAACAATTCTTCTTTTATTTGACATTATGGATATTCTCTTTGCAATTCTTCGTAATTGATTATTCATCTTTATATTGTAATTTTAGCATTATCAATTTACCAAATATCTAGTTAACATATATGAGCTTTTCTTTGCATCTTTATATTAGTGGAGACATATTCTGAAGGTTCAAGAACTTCGATTATTGTAGTTTTGACTTTCAATGGTAATATTTTGAAGATTTAAGAAATATAAACCAAATTCCTTAGAATTATGAAACCAAAAGAAAATATGCATTCTTTTGGTTATCGAGCCAGTGCCTTGGTCCAACTTCTGCCGTCACTATTCTTGCAATTTTGTGCGCCATGGCCTTCTTCTCCGATAACTTCAACTCTCCCTCTCCCACGACCAATGTTTAGGTTGAGCATTTTTGTTCTGAATGAGGTTTTTATGGATGTTTTCTTGAATGTGAACGAAAAATTAGGTGCACTTGAGAAAGAGTTCTGTTGGAAGATGTTTTTAGATATTCTTTTATGTTCTGGGTGTTTGTTTTTGAGTTGACTGAATCTAAGGCGTTTGTTTTTTTTTTCCCCCTAAATTAATGAAGGAAAAATGCGATCATTTACAACTTGAAGCTCAAAAATGTTCCTGAAGAGGCAGCCTGTAAGCTACTTGATTATTGTCATTTGTTTGTCTGCTTTGTGCCACCTTGTGCAGTTATGGTTGTATTGATTTTTTTAATCCTCCTTTTCTATGCTTCAGATTTGTCTGCCGAGGCTGTGCTGACTGTGGTAGGCTTATTCTTTTGGGGAACAGTATTAAGCTTTTTTCAAAGCGATATCCTTGTATAAAAGAAGATTTCGTAGCGGTGTGTCTGTTATATCTGCCTCTAAAGGATTTATTTGTAGATTTTCTTTTTCGTTTTTGTTGCAATCTATGGATGAGATTGTGAAGTTTGACTGTTTATTTTGTTGTTTGATGTGACATTAAGTTGTGCCCGTGATTATGCGTGTTATTTGTCTACTAGAATACTATTTTAGTTATTTTGTTGTTCATTTACCTCTTTTTGAAAAAACTTATTCAAAAACTAGGTCTCTGTTGTTGTTTAAAATATGCTTGTTATCTAGTTTGGTGCAACATGTTTAATAATTGTGTGATGATTCGTTTCCTTTCTACCTCTTAATTGTCCTTTTATGATGTTCCTTCTCTGTTTCTTCTTGAGGTTTGGCTACAATAGCATTTTCTCTGTTTATTTTTAGTTCTACTATGGTTAATTTGTTGAGAAGAAGTTTTTGCATCTTTTGTAAAACCTCAAGTTTCTACATCTCCGTGATTCATTTATTGTGAAATATGGAGTGGTAACATGTCAACTCTATACTCTTCCTTGGCAGGGACGATTCAAAGCATGAACTAAGAAACAGAAGATTAGTGAAAAGAAAGTTTCCACTTCTATAGAGGTTAGTTATTTCCTAGGGTATTGTTGTGATGTGTGTGTTGTGTTATTGTTGTATACATTTAATTATTAACTTGTATGACAGTTTAAAAGTCATTATAGTCGTAATTGGGTTTAGAAAGGTGTTACCTCTAATGTCATAGTTACTTGGTTGTATGGATATCCTGCTGTTACGATAGCCATACAAATCGATAAGTTTGTATGATTTGAAGTGTGTTTGGATGAATTTATGGGATGTGGACTGAGTGAGTGAATTAGGCACATTTTTTGGCTTCTAATGAGTGAATTAGTTACGTTGGCATGTGTTCCACTTTTAAGGGTCAATTTAGGTGAGATTGTAAGGTTTGAAGTATGTTTGGGTGGGATTTGGAGTAAGTTAGACACATTTGTTTTGGCTTTTAAAGGTTTGTTTGGTGAGTTTGTAGGATGTGGAGTAA

mRNA sequence

ATGAAGCTCGATACCAGTGGTCTTCAAACAACTGCTCTGCTGTTTGGGCAAAAAATGGAGATGCTGGAAGGGTTTTCTGCTGTTCCATCCTTTGAGATCCCTAATTCCAGTGACGTAACTTTTATGGTTGTATTGATTTTTTTAATCCTCCTTTTCTATGCTTCAGATTTGTCTGCCGAGGCTGTGCTGACTGTGGATGTGGAGTAA

Coding sequence (CDS)

ATGAAGCTCGATACCAGTGGTCTTCAAACAACTGCTCTGCTGTTTGGGCAAAAAATGGAGATGCTGGAAGGGTTTTCTGCTGTTCCATCCTTTGAGATCCCTAATTCCAGTGACGTAACTTTTATGGTTGTATTGATTTTTTTAATCCTCCTTTTCTATGCTTCAGATTTGTCTGCCGAGGCTGTGCTGACTGTGGATGTGGAGTAA

Protein sequence

MKLDTSGLQTTALLFGQKMEMLEGFSAVPSFEIPNSSDVTFMVVLIFLILLFYASDLSAEAVLTVDVE
Homology
[Close]
BLAST of Lcy12g003190 vs. ExPASy Swiss-Prot
Match: Q9LIP2 (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana OX=3702 GN=PBE2 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 1  MKLDTSGLQTT--ALLFGQKMEMLEGFSAVPSFEIPNSSD 39
          MKLDTSGL+TT   + FG   EML+GFS+ PSF++P ++D
Sbjct: 1  MKLDTSGLETTMPVIGFGSNSEMLDGFSSAPSFDLPRTTD 40

[Close]
BLAST of Lcy12g003190 vs. ExPASy TrEMBL
Match: A0A6J1BS30 (Proteasome subunit beta OS=Momordica charantia OX=3673 GN=LOC111004886 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 1  MKLDTSGLQTTALLFGQKMEMLEGFSAVPSFEIPNSSD 39
          MKLDTSGLQTTA LFG KME+LEGFSA PSFEIPNS+D
Sbjct: 1  MKLDTSGLQTTAPLFGPKMEILEGFSAAPSFEIPNSND 38

[Close]
BLAST of Lcy12g003190 vs. ExPASy TrEMBL
Match: A0A6J1KPP5 (Proteasome subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111496110 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-08
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 1  MKLDTSGLQTTALLFGQKMEMLEGFSAVPSFEIPNSSD 39
          MKLDTSGLQT+A LFG KME+LEGFSA PSFE+PNSSD
Sbjct: 1  MKLDTSGLQTSAPLFGPKMEILEGFSAAPSFEVPNSSD 38

[Close]
BLAST of Lcy12g003190 vs. ExPASy TrEMBL
Match: A0A6J1KAW4 (Proteasome subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111492198 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 1  MKLDTSGLQTTALLFGQKMEMLEGFSAVPSFEIPNSSD 39
          MKLDTSGLQTTA LFG KME +EGF+A PSFEIPNSSD
Sbjct: 1  MKLDTSGLQTTAPLFGPKMEFMEGFAAAPSFEIPNSSD 38

[Close]
BLAST of Lcy12g003190 vs. ExPASy TrEMBL
Match: A0A6J1HF19 (Proteasome subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111462451 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 1  MKLDTSGLQTTALLFGQKMEMLEGFSAVPSFEIPNSSD 39
          MKLDTSGLQTTA LFG KME +EGF+A PSFEIPNSSD
Sbjct: 1  MKLDTSGLQTTAPLFGPKMEFMEGFAAAPSFEIPNSSD 38

[Close]
BLAST of Lcy12g003190 vs. ExPASy TrEMBL
Match: A0A5A7VGZ1 (Proteasome subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00430 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 1  MKLDTSGLQTTALLFGQKMEMLEGFSAVPSFEIPNSSD 39
          MKLDTSGLQTTA +FG +ME LEGF+A PSFEIPNSSD
Sbjct: 1  MKLDTSGLQTTAPMFGPRMEALEGFAAAPSFEIPNSSD 38

[Close]
BLAST of Lcy12g003190 vs. NCBI nr
Match: XP_022131817.1 (proteasome subunit beta type-5 [Momordica charantia] >XP_022131818.1 proteasome subunit beta type-5 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-08
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 1  MKLDTSGLQTTALLFGQKMEMLEGFSAVPSFEIPNSSD 39
          MKLDTSGLQTTA LFG KME+LEGFSA PSFEIPNS+D
Sbjct: 1  MKLDTSGLQTTAPLFGPKMEILEGFSAAPSFEIPNSND 38

[Close]
BLAST of Lcy12g003190 vs. NCBI nr
Match: XP_023002169.1 (proteasome subunit beta type-5-B isoform X1 [Cucurbita maxima])

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-08
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 1  MKLDTSGLQTTALLFGQKMEMLEGFSAVPSFEIPNSSD 39
          MKLDTSGLQT+A LFG KME+LEGFSA PSFE+PNSSD
Sbjct: 1  MKLDTSGLQTSAPLFGPKMEILEGFSAAPSFEVPNSSD 38

[Close]
BLAST of Lcy12g003190 vs. NCBI nr
Match: XP_038883961.1 (proteasome subunit beta type-5 isoform X1 [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-08
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 1  MKLDTSGLQTTALLFGQKMEMLEGFSAVPSFEIPNSSD 39
          MKLDTSGLQTTA LFG KME LEGF+A PSFEIPNSSD
Sbjct: 1  MKLDTSGLQTTAPLFGPKMEALEGFAAAPSFEIPNSSD 38

[Close]
BLAST of Lcy12g003190 vs. NCBI nr
Match: XP_023538613.1 (proteasome subunit beta type-5-B isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-08
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 1  MKLDTSGLQTTALLFGQKMEMLEGFSAVPSFEIPNSSD 39
          MKLDTSGLQT+A LFG KME+LEGFSA PSFE+PNSSD
Sbjct: 1  MKLDTSGLQTSAPLFGPKMEILEGFSAAPSFEVPNSSD 38

[Close]
BLAST of Lcy12g003190 vs. NCBI nr
Match: XP_022961789.1 (proteasome subunit beta type-5-like [Cucurbita moschata] >XP_022997234.1 proteasome subunit beta type-5-like [Cucurbita maxima] >XP_022997235.1 proteasome subunit beta type-5-like [Cucurbita maxima])

HSP 1 Score: 67.0 bits (162), Expect = 7.1e-08
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 1  MKLDTSGLQTTALLFGQKMEMLEGFSAVPSFEIPNSSD 39
          MKLDTSGLQTTA LFG KME +EGF+A PSFEIPNSSD
Sbjct: 1  MKLDTSGLQTTAPLFGPKMEFMEGFAAAPSFEIPNSSD 38

[Close]
BLAST of Lcy12g003190 vs. TAIR 10
Match: AT3G26340.1 (N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 1  MKLDTSGLQTT--ALLFGQKMEMLEGFSAVPSFEIPNSSD 39
          MKLDTSGL+TT   + FG   EML+GFS+ PSF++P ++D
Sbjct: 1  MKLDTSGLETTMPVIGFGSNSEMLDGFSSAPSFDLPRTTD 40

The following BLAST results are available for this feature:
BLAST of Lcy12g003190 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LIP22.0e-0557.50Proteasome subunit beta type-5-B OS=Arabidopsis thaliana OX=3702 GN=PBE2 PE=1 SV... [more]
BLAST of Lcy12g003190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BS301.5e-0886.84Proteasome subunit beta OS=Momordica charantia OX=3673 GN=LOC111004886 PE=3 SV=1[more]
A0A6J1KPP52.6e-0884.21Proteasome subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111496110 PE=3 SV=1[more]
A0A6J1KAW43.4e-0884.21Proteasome subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111492198 PE=3 SV=1[more]
A0A6J1HF193.4e-0884.21Proteasome subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111462451 PE=3 SV=1[more]
A0A5A7VGZ11.0e-0781.58Proteasome subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Lcy12g003190 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022131817.13.2e-0886.84proteasome subunit beta type-5 [Momordica charantia] >XP_022131818.1 proteasome ... [more]
XP_023002169.15.4e-0884.21proteasome subunit beta type-5-B isoform X1 [Cucurbita maxima][more]
XP_038883961.15.4e-0886.84proteasome subunit beta type-5 isoform X1 [Benincasa hispida][more]
XP_023538613.15.4e-0884.21proteasome subunit beta type-5-B isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022961789.17.1e-0884.21proteasome subunit beta type-5-like [Cucurbita moschata] >XP_022997234.1 proteas... [more]
BLAST of Lcy12g003190 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G26340.11.4e-0657.50N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g003190.1Lcy12g003190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010498 proteasomal protein catabolic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0019774 proteasome core complex, beta-subunit complex
molecular_function GO:0004298 threonine-type endopeptidase activity