Lcy12g002830 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g002830
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionLeucine-rich repeat protein kinase family protein
LocationChr12: 7996416 .. 7999275 (-)
RNA-Seq ExpressionLcy12g002830
SyntenyLcy12g002830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTCCATGACACTAAGGGAAAAGGAAATAAAGGTAAGAGAGAGAAAAAAATGTCATAAAATGTAAGAGGCGCGTTTTTGGCGGGAAAAAACGGAGATTTTCGAATTTTCGGAAATTTATGACATTTTTTCAAGGTCATAAATCTATGACTTTGATTAACTGTCATTAATTAAAAATAATTAAAAAGGGGCATTTAAGTAATTACGTATGTAATAGCCAATTAAAAAAAAAGTAAAATCAATTTTGTGAAAACCCTCAAATCTCTATCTCTCACGTTCCCTCTCCCCCTCACGATCTCCTGCTCTCTCTCAAAACCCTCTCTACCTCACTCGTCATTCTCTCAACTCTCTCGTCGCTTTCTCCCTCTCGGTCACGAACAGGAACCACCGCCATCGTCATTTCCTCTCCGATCACGTCACCTCTGCTGCTTGCAACCTCCGCCTCCGACCCAATTGACAAGCGCCACCGCCTCTCTCCTTCTGCAGCTAGTCAGTCTCTCTCTCCCTCTCGGTTCGATTTCTCGTCTTGATTCTATGGGTTTTTTCTTTCTTTGATTAATTATCATAGTTTATGTGTGTATGTATGTGATGTCTTGTTTGGGTTTATTGAAAAACGTCAAAAGCAAATTTGTGTTTATGGTTATGGGAGGAGGATTTTTCGAGTTTTTGTTTGTCCGCCATCTATATGAATGACTGCTTACTGGTTTGAGAAAATTGTTCATAATTCATAATCAACTCACTATAGCAGACCTCTATTTTGATGAGAAGAATAAGGCAAGCTTAGATTGAAAATTGGGAAATTATAGAAGTTTGACCACCCAATTGGCATATTATGAATTGATAAGTTTATGTTTCCAAGCCCAAACTGTAACACCTACACCTCCACCATTCTCAGTGCTAACAAACTTCTGCAATGTTACAGACCTTAATTTAACCTTAGTTCCATCCTATATAATACCACAATCGCACAACTGAGCTATCTTGAAGACTTGGATTGCATTCAACAATGAACATAACAAAATATGACCATAAAGATGAAACTCACTAGCATATCTCCATTGGGAATGCCTTCAGAAAGTGAAGGCTTAATCCAACCTTCAATGACCAACCATCCTCCTATGTTCACTCCTCTGACTTTATTATCCCCAAGAATTCCCTCCACTTGAACCAAGATAAAAGGATGAATAAGTAAGTTTAAGTACAGAGCACAAACGAAAGAAATTAAAACCATTGGAGCCTACTTGAATGTGCTCTTGAGGAGATAAGACAACAGTAGAGGAAAAACGCCGACACACATTTGGTGAAAATAAGTTCCATTAAGCAATGCCAGCAGAAACAACATCACAAACCCAAAAATACAGTGACCATTTGGTACAGAAGAGTTAGAGGAGTGAAAAATACGCAGCTAAGAATGAAGGGGTTGCTCCGATTGAAAGCATCATTTGGGTAGGAGAATCTTAGTAATTCCTTCCGTATTTCTCAGATAATACCAAATTGAAATTGGCGAACTAGCATAAAGATCAAAGGGTTGGCCTCTCTCATTTCTTTAATGTTATATTGTAGTTTATGTTTAATTATTAGCTTGTATGATTGTTTAGAAATTATTGCAACCATAACTGAATTTCAAAATCAGTTTAGGTGAGTTAGGATTCTTCCTTTAGTGTCATAGTTTATTTGGTTGTATGGCTACCTGCAATTATGGTAGCTATACAAATAGAGAGTTAGATTCAGTGAGTTAGACACATTATTTTTTCAAGGGTTAGATTGGATAAGTTGATGAGATTTGAATTACGATTAATATAAAGTTGCTAGAGCACTGAGACATGGTCCAAATGTTAATTGAACAGTTAAGTTTACTGAATGGGAGAATTGATTGAGAATACAGTTTTATTTTACGAAGCCTCCCATTGCAAAGAAGAAGATTTTTGCTTGGTGGATGGACACAAAAGAATTTGGTTAAAATGTGTTTTAACTTGAAGGGTCTATGGAGGAAGTTGTTCTTCCTGAGAAAGGTTAGCACCATCATTTTTCCACCCGTTACTCGTTGGATAAATTTTGATGTTTTTTGTTCTCTTTAGTGAAACATAGTTAAAATGAGTTCTACTCTAGTGCGTTTGAAGCTTTTATTATCTAGTGCACTAATCTTCAAGCAACAAGGTATTGCATTGCAAAATTTGATTCATGGTCTAACTTTGTTTATTCGTTGATGATCAGTTGATGTCATAATCTCAGACTGGTTGAAGCCAACTGGGGTGATGTAAGTGATGGAAGTAGTTGATTCTTGATTTTATTTCCTATAGTAACTTCTACTTAGTTATTTTTTTCGCTCTCTTGCTTTTTTTTTTCTTCTAATTATCTCGTTTTCCATTATTCTCAACGCAGTAAATTTTCTAAACCCATGGAAAATTTTGAAACATTATCAATACCAACCAATTAGAGATGAGTATTGTAGTGGTGTGCTAGAACTCAGAAACTTTAAACAAGTGGATAAACTTGAACCAGTACTTGAATTTGTTCGTAGTTTCATCCTCGTCATAAACGTTGTAGGTTGGTCTCACTCTCAGTTATTTAATGGATTTGCCTGATTAGCAGCAGATTTGACTTCAGGTTTGAACTTCTTTTACTTTAGTTCGTATAACAATTTGTTAGAATGATAGTTTAGAAACCATGGGTGTTACAGTGAAGCAGAGTTTGACTATAATTTGGCTTTGACAATGTCAAGAGGTTGAAATGCGACCCTGCTAAGTCTCATGCTCATGTTGTCTGTGCAGTTGGAGTGCTTCAATCCTTGAAAGATGAGTGGCAAAATATTCCACCAAGCTGGGAAACATCAAATGATCCCCGTGGAACTCCCTAA

mRNA sequence

ATGGGATTCCATGACACTAAGGGAAAAGGAAATAAAGGAACCACCGCCATCGTCATTTCCTCTCCGATCACGTCACCTCTGCTGCTTGCAACCTCCGCCTCCGACCCAATTGACAAGCGCCACCGCCTCTCTCCTTCTGCAGCTATTGGAGTGCTTCAATCCTTGAAAGATGAGTGGCAAAATATTCCACCAAGCTGGGAAACATCAAATGATCCCCGTGGAACTCCCTAA

Coding sequence (CDS)

ATGGGATTCCATGACACTAAGGGAAAAGGAAATAAAGGAACCACCGCCATCGTCATTTCCTCTCCGATCACGTCACCTCTGCTGCTTGCAACCTCCGCCTCCGACCCAATTGACAAGCGCCACCGCCTCTCTCCTTCTGCAGCTATTGGAGTGCTTCAATCCTTGAAAGATGAGTGGCAAAATATTCCACCAAGCTGGGAAACATCAAATGATCCCCGTGGAACTCCCTAA

Protein sequence

MGFHDTKGKGNKGTTAIVISSPITSPLLLATSASDPIDKRHRLSPSAAIGVLQSLKDEWQNIPPSWETSNDPRGTP
Homology
[Close]
BLAST of Lcy12g002830 vs. TAIR 10
Match: AT1G79620.1 (Leucine-rich repeat protein kinase family protein )

HSP 1 Score: 40.4 bits (93), Expect = 7.4e-04
Identity = 20/48 (41.67%), Postives = 26/48 (54.17%), Query Frame = 0 

Query: 29 LATSASDPIDKRHRLSPSAAIGVLQSLKDEWQNIPPSWETSNDPRGTP 77
          + +S +DP D             L+SL D+W N PPSW  S+DP GTP
Sbjct: 27 MISSVTDPRD----------AAALRSLMDQWDNTPPSWGGSDDPCGTP 64

The following BLAST results are available for this feature:
BLAST of Lcy12g002830 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy12g002830 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy12g002830 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy12g002830 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G79620.17.4e-0441.67Leucine-rich repeat protein kinase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g002830.1Lcy12g002830.1mRNA