Lcy12g002420 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g002420
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionATP citrate synthase
LocationChr12: 6583583 .. 6583962 (+)
RNA-Seq ExpressionLcy12g002420
SyntenyLcy12g002420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCAGTGCAATTAATTATTTAAATGCATGAGCTGCTATATATATTGTCATCTTAAACTGCAATGTCTCTGTAGGTGGGGTGATATTGAGTTTCCATTGCCATTTGGAAGGGTTATGAGTGCAACTGAAAGCTTTATTCATGGCCTAGATGAAAAGGTGAAAAACAGTCCTATTTCTTACACATCTTTCAGCAAACCTCTTAAAAATCTTTCCTTACTTTCGTCACTGCTATGCTGTTTCTTATGTCAGAAGAAAGATTTATCAGCGTTAGTGGTTATACGGCCTCCAAATTTCACATACACTTTGATGTCTGTTAATCTGATATAGAACTCTCAGGATTCTGTTTTGGATCAAGGATAGTAAATAATGAAAACTGGAGG

mRNA sequence

TTTCAGTGCAATTAATTATTTAAATGCATGAGCTGCTATATATATTGTCATCTTAAACTGCAATGTCTCTGTAGGTGGGGTGATATTGAGTTTCCATTGCCATTTGGAAGGGTTATGAGTGCAACTGAAAGCTTTATTCATGGCCTAGATGAAAAGGTGAAAAACAGTCCTATTTCTTACACATCTTTCAGCAAACCTCTTAAAAATCTTTCCTTACTTTCGTCACTGCTATGCTGTTTCTTATGTCAGAAGAAAGATTTATCAGCGTTAGTGGTTATACGGCCTCCAAATTTCACATACACTTTGATGTCTGTTAATCTGATATAGAACTCTCAGGATTCTGTTTTGGATCAAGGATAGTAAATAATGAAAACTGGAGG

Coding sequence (CDS)

ATGAGCTGCTATATATATTGTCATCTTAAACTGCAATGTCTCTGTAGGTGGGGTGATATTGAGTTTCCATTGCCATTTGGAAGGGTTATGAGTGCAACTGAAAGCTTTATTCATGGCCTAGATGAAAAGGTGAAAAACAGTCCTATTTCTTACACATCTTTCAGCAAACCTCTTAAAAATCTTTCCTTACTTTCGTCACTGCTATGCTGTTTCTTATGTCAGAAGAAAGATTTATCAGCGTTAGTGGTTATACGGCCTCCAAATTTCACATACACTTTGATGTCTGTTAATCTGATATAG

Protein sequence

MSCYIYCHLKLQCLCRWGDIEFPLPFGRVMSATESFIHGLDEKVKNSPISYTSFSKPLKNLSLLSSLLCCFLCQKKDLSALVVIRPPNFTYTLMSVNLI
Homology
[Close]
BLAST of Lcy12g002420 vs. ExPASy Swiss-Prot
Match: Q9SGY2 (ATP-citrate synthase alpha chain protein 1 OS=Arabidopsis thaliana OX=3702 GN=ACLA-1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-09
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFPLPFGRVMS TESFIHGLDEK   S
Sbjct: 229 KWGDIEFPLPFGRVMSPTESFIHGLDEKTSAS 260

[Close]
BLAST of Lcy12g002420 vs. ExPASy Swiss-Prot
Match: O22718 (ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana OX=3702 GN=ACLA-2 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-09
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFP+PFGRVMS+TESFIHGLDEK   S
Sbjct: 229 KWGDIEFPMPFGRVMSSTESFIHGLDEKTSAS 260

[Close]
BLAST of Lcy12g002420 vs. ExPASy Swiss-Prot
Match: O80526 (ATP-citrate synthase alpha chain protein 3 OS=Arabidopsis thaliana OX=3702 GN=ACLA-3 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.4e-09
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFPLPFGRV+S+TE+FIHGLDEK   S
Sbjct: 229 KWGDIEFPLPFGRVLSSTENFIHGLDEKTSAS 260

[Close]
BLAST of Lcy12g002420 vs. ExPASy Swiss-Prot
Match: Q53JY8 (ATP-citrate synthase subunit alpha chain protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ACLA-1 PE=3 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WG+IEFPLPFGRV+S+TE FIH LDEK   S
Sbjct: 230 KWGNIEFPLPFGRVLSSTEGFIHDLDEKTSAS 261

[Close]
BLAST of Lcy12g002420 vs. ExPASy Swiss-Prot
Match: Q2QZ86 (ATP-citrate synthase alpha chain protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ACLA-2 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WG+IEFPLPFGRV+S+TE FIH LDEK   S
Sbjct: 229 KWGNIEFPLPFGRVLSSTEGFIHDLDEKTSAS 260

[Close]
BLAST of Lcy12g002420 vs. ExPASy TrEMBL
Match: A0A072UE79 (ATP citrate synthase OS=Medicago truncatula OX=3880 GN=11407101 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-08
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 15  CRWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           CRWG+IEFPLPFGRVMSATESFIHGLDEK   S
Sbjct: 235 CRWGNIEFPLPFGRVMSATESFIHGLDEKTSAS 267

[Close]
BLAST of Lcy12g002420 vs. ExPASy TrEMBL
Match: A0A0B2Q401 (ATP citrate synthase OS=Glycine soja OX=3848 GN=D0Y65_000288 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFPLPFGRVMSATESFIHGLDEK   S
Sbjct: 229 KWGDIEFPLPFGRVMSATESFIHGLDEKTSAS 260

[Close]
BLAST of Lcy12g002420 vs. ExPASy TrEMBL
Match: A0A445LJC7 (ATP citrate synthase OS=Glycine soja OX=3848 GN=D0Y65_002875 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFPLPFGRVMSATESFIHGLDEK   S
Sbjct: 229 KWGDIEFPLPFGRVMSATESFIHGLDEKTSAS 260

[Close]
BLAST of Lcy12g002420 vs. ExPASy TrEMBL
Match: I1J574 (ATP citrate synthase OS=Glycine max OX=3847 GN=GLYMA_01G028900 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFPLPFGRVMSATESFIHGLDEK   S
Sbjct: 229 KWGDIEFPLPFGRVMSATESFIHGLDEKTSAS 260

[Close]
BLAST of Lcy12g002420 vs. ExPASy TrEMBL
Match: I1JC43 (ATP citrate synthase OS=Glycine max OX=3847 GN=GLYMA_02G036300 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFPLPFGRVMSATESFIHGLDEK   S
Sbjct: 229 KWGDIEFPLPFGRVMSATESFIHGLDEKTSAS 260

[Close]
BLAST of Lcy12g002420 vs. NCBI nr
Match: XP_013453720.1 (ATP-citrate synthase alpha chain protein 1 isoform X1 [Medicago truncatula] >KEH27751.1 ATP-citrate synthase alpha chain protein [Medicago truncatula])

HSP 1 Score: 67.8 bits (164), Expect = 6.1e-08
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 15  CRWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           CRWG+IEFPLPFGRVMSATESFIHGLDEK   S
Sbjct: 235 CRWGNIEFPLPFGRVMSATESFIHGLDEKTSAS 267

[Close]
BLAST of Lcy12g002420 vs. NCBI nr
Match: XP_020206770.1 (ATP-citrate synthase alpha chain protein 2 isoform X1 [Cajanus cajan])

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-07
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 14 LCRWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
          +CRWG+IEFP+PFGRVMS TESFIHGLDEK   S
Sbjct: 6  ICRWGNIEFPMPFGRVMSTTESFIHGLDEKTSAS 39

[Close]
BLAST of Lcy12g002420 vs. NCBI nr
Match: XP_020206771.1 (ATP-citrate synthase alpha chain protein 2 isoform X2 [Cajanus cajan])

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-07
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 14 LCRWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
          +CRWG+IEFP+PFGRVMS TESFIHGLDEK   S
Sbjct: 6  ICRWGNIEFPMPFGRVMSTTESFIHGLDEKTSAS 39

[Close]
BLAST of Lcy12g002420 vs. NCBI nr
Match: RZC28210.1 (ATP-citrate synthase alpha chain protein 1 isoform D [Glycine soja])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFPLPFGRVMSATESFIHGLDEK   S
Sbjct: 229 KWGDIEFPLPFGRVMSATESFIHGLDEKTSAS 260

[Close]
BLAST of Lcy12g002420 vs. NCBI nr
Match: GAV70610.1 (ATP-grasp_2 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFPLPFGRVMSATESFIHGLDEK   S
Sbjct: 229 KWGDIEFPLPFGRVMSATESFIHGLDEKTSAS 260

[Close]
BLAST of Lcy12g002420 vs. TAIR 10
Match: AT1G60810.1 (ATP-citrate lyase A-2 )

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFP+PFGRVMS+TESFIHGLDEK   S
Sbjct: 229 KWGDIEFPMPFGRVMSSTESFIHGLDEKTSAS 260

[Close]
BLAST of Lcy12g002420 vs. TAIR 10
Match: AT1G10670.1 (ATP-citrate lyase A-1 )

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFPLPFGRVMS TESFIHGLDEK   S
Sbjct: 229 KWGDIEFPLPFGRVMSPTESFIHGLDEKTSAS 260

[Close]
BLAST of Lcy12g002420 vs. TAIR 10
Match: AT1G10670.2 (ATP-citrate lyase A-1 )

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFPLPFGRVMS TESFIHGLDEK   S
Sbjct: 229 KWGDIEFPLPFGRVMSPTESFIHGLDEKTSAS 260

[Close]
BLAST of Lcy12g002420 vs. TAIR 10
Match: AT1G10670.3 (ATP-citrate lyase A-1 )

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFPLPFGRVMS TESFIHGLDEK   S
Sbjct: 249 KWGDIEFPLPFGRVMSPTESFIHGLDEKTSAS 280

[Close]
BLAST of Lcy12g002420 vs. TAIR 10
Match: AT1G10670.4 (ATP-citrate lyase A-1 )

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 16  RWGDIEFPLPFGRVMSATESFIHGLDEKVKNS 48
           +WGDIEFPLPFGRVMS TESFIHGLDEK   S
Sbjct: 229 KWGDIEFPLPFGRVMSPTESFIHGLDEKTSAS 260

The following BLAST results are available for this feature:
BLAST of Lcy12g002420 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SGY21.5e-0984.38ATP-citrate synthase alpha chain protein 1 OS=Arabidopsis thaliana OX=3702 GN=AC... [more]
O227181.5e-0981.25ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana OX=3702 GN=AC... [more]
O805264.4e-0978.13ATP-citrate synthase alpha chain protein 3 OS=Arabidopsis thaliana OX=3702 GN=AC... [more]
Q53JY81.4e-0771.88ATP-citrate synthase subunit alpha chain protein 1 OS=Oryza sativa subsp. japoni... [more]
Q2QZ861.4e-0771.88ATP-citrate synthase alpha chain protein 2 OS=Oryza sativa subsp. japonica OX=39... [more]
BLAST of Lcy12g002420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A072UE792.9e-0887.88ATP citrate synthase OS=Medicago truncatula OX=3880 GN=11407101 PE=3 SV=1[more]
A0A0B2Q4011.5e-0787.50ATP citrate synthase OS=Glycine soja OX=3848 GN=D0Y65_000288 PE=3 SV=1[more]
A0A445LJC71.5e-0787.50ATP citrate synthase OS=Glycine soja OX=3848 GN=D0Y65_002875 PE=3 SV=1[more]
I1J5741.5e-0787.50ATP citrate synthase OS=Glycine max OX=3847 GN=GLYMA_01G028900 PE=3 SV=1[more]
I1JC431.5e-0787.50ATP citrate synthase OS=Glycine max OX=3847 GN=GLYMA_02G036300 PE=3 SV=1[more]
BLAST of Lcy12g002420 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_013453720.16.1e-0887.88ATP-citrate synthase alpha chain protein 1 isoform X1 [Medicago truncatula] >KEH... [more]
XP_020206770.12.3e-0779.41ATP-citrate synthase alpha chain protein 2 isoform X1 [Cajanus cajan][more]
XP_020206771.12.3e-0779.41ATP-citrate synthase alpha chain protein 2 isoform X2 [Cajanus cajan][more]
RZC28210.13.0e-0787.50ATP-citrate synthase alpha chain protein 1 isoform D [Glycine soja][more]
GAV70610.13.0e-0787.50ATP-grasp_2 domain-containing protein [Cephalotus follicularis][more]
BLAST of Lcy12g002420 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G60810.11.1e-1081.25ATP-citrate lyase A-2 [more]
AT1G10670.11.1e-1084.38ATP-citrate lyase A-1 [more]
AT1G10670.21.1e-1084.38ATP-citrate lyase A-1 [more]
AT1G10670.31.1e-1084.38ATP-citrate lyase A-1 [more]
AT1G10670.41.1e-1084.38ATP-citrate lyase A-1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g002420.1Lcy12g002420.1mRNA