Lcy12g002360 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g002360
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr12: 6187267 .. 6187681 (-)
RNA-Seq Expression	Lcy12g002360
Synteny	Lcy12g002360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGGAAGTAGAGGCAGAGCCTCCTCTTCAAGGGGCAGTCGCCCATCTTCTTCCACAGCACCTCCTCCTATGAGTGCTGATCAATATGCCATGGATTTAGGGTTTACTCCAGTAACCCGATCCAGGTCCAGGCAAAGCGGTATACGCCCGATGCCTCCAATGGAGTCATCCACTCCACCTCCAAGGCCTTCGGCCAACCTTGTCCGTCCTTCTAGCGGAATTGTTCAATTGAGACCTCCTATCTCACCTTCTTCAATAGCAGGATCATCGATCCCATCTTCCTCAACTTATTCTCAGGCGGTAGTACCTGAAAATAGGTTTGTACCTCGTCCTGGGATCAAATCTTATTTCCAAAAATACCAGGTTATCTATGAACCTATCATAGAACCTGAATTCCAGGGTCTTAACTTAG

mRNA sequence

ATGAGCGGAAGTAGAGGCAGAGCCTCCTCTTCAAGGGGCAGTCGCCCATCTTCTTCCACAGCACCTCCTCCTATGAGTGCTGATCAATATGCCATGGATTTAGGGTTTACTCCAGTAACCCGATCCAGGTCCAGGCAAAGCGGTATACGCCCGATGCCTCCAATGGAGTCATCCACTCCACCTCCAAGGCCTTCGGCCAACCTTGTCCGTCCTTCTAGCGGAATTGTTCAATTGAGACCTCCTATCTCACCTTCTTCAATAGCAGGATCATCGATCCCATCTTCCTCAACTTATTCTCAGGCGGTAGTACCTGAAAATAGGGTCTTAACTTAG

Coding sequence (CDS)

ATGAGCGGAAGTAGAGGCAGAGCCTCCTCTTCAAGGGGCAGTCGCCCATCTTCTTCCACAGCACCTCCTCCTATGAGTGCTGATCAATATGCCATGGATTTAGGGTTTACTCCAGTAACCCGATCCAGGTCCAGGCAAAGCGGTATACGCCCGATGCCTCCAATGGAGTCATCCACTCCACCTCCAAGGCCTTCGGCCAACCTTGTCCGTCCTTCTAGCGGAATTGTTCAATTGAGACCTCCTATCTCACCTTCTTCAATAGCAGGATCATCGATCCCATCTTCCTCAACTTATTCTCAGGCGGTAGTACCTGAAAATAGGGTCTTAACTTAG

Protein sequence

MSGSRGRASSSRGSRPSSSTAPPPMSADQYAMDLGFTPVTRSRSRQSGIRPMPPMESSTPPPRPSANLVRPSSGIVQLRPPISPSSIAGSSIPSSSTYSQAVVPENRVLT

Homology

[Close]

BLAST of Lcy12g002360 vs. ExPASy TrEMBL
Match: A0A5A7U8A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00530 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.4e-21
Identity = 70/108 (64.81%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 4   SRGR--ASSSRGSRPSSS--TAPPPMSADQYAMDLGFTPVTRSRSRQSGIRPMPPMESST 63
           +RGR  ++SS+G+RPSSS  + P PMSADQYAMDLGFT VTRSRSR S IR   P ESST
Sbjct: 8   ARGRTNSTSSKGNRPSSSSNSTPSPMSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESST 67

Query: 64  PPPRPSANLVRPSSGIVQLRPPISPSSIAGSSIPSSSTYSQAVVPENR 108
            PP+PS NL+RPS G+VQ+R P+SPSS   SS P  +TYSQAV P+ R
Sbjct: 68  -PPKPSTNLIRPSGGVVQMRSPVSPSSNRKSSTP-PTTYSQAVTPDKR 113

[Close]

BLAST of Lcy12g002360 vs. ExPASy TrEMBL
Match: A0A5D3CKX1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00620 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.8e-20
Identity = 68/105 (64.76%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 5   RGRASSSRGSRPSSS--TAPPPMSADQYAMDLGFTPVTRSRSRQSGIRPMPPMESSTPPP 64
           R  ++SS+G+RPSSS  +AP PMSADQY MDLGFT V RSRSR S IR   P ESST PP
Sbjct: 11  RTNSTSSKGNRPSSSSNSAPSPMSADQYEMDLGFTTVIRSRSRSSSIRTESPTESST-PP 70

Query: 65  RPSANLVRPSSGIVQLRPPISPSSIAGSSIPSSSTYSQAVVPENR 108
           RP ANL+RPS  +VQ+RPP SPSS   SS P  +TYSQAV P+ R
Sbjct: 71  RPLANLIRPSGRVVQMRPPASPSSNRESSTP-PTTYSQAVTPDKR 113

[Close]

BLAST of Lcy12g002360 vs. ExPASy TrEMBL
Match: A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 4   SRGR--ASSSRGSRP--SSSTAPPPMSADQYAMDLGFTPVTRSRSRQSGIRPMPPMESST 63
           +RGR  ++SS+G+RP  SS++AP P+SADQYAMDLGFT VTR  SR  GI    P ESST
Sbjct: 8   ARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESST 67

Query: 64  PPPRPSANLVRPSSGIVQLRPPISPSSIAGSSIPSSSTYSQAVVPENR 108
            PPRPS NL+RPSSG+VQ+RPP SPSS   SS P  +TYSQAV P+ R
Sbjct: 68  -PPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP-PTTYSQAVTPDKR 113

[Close]

BLAST of Lcy12g002360 vs. ExPASy TrEMBL
Match: A0A5A7URX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00510 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 70/111 (63.06%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 4   SRGR--ASSSRGSRPSSST--APPPMSADQYAMDLGFTPVTRSRSRQSGIRPMPPMESST 63
           +RGR  ++SS+G+RPSSS+  AP PMSADQYAMDL FT +TRSRSR SGIR   P ESST
Sbjct: 8   ARGRTNSTSSKGNRPSSSSNFAPSPMSADQYAMDLEFTTITRSRSRSSGIRIGSPTESST 67

Query: 64  PPPRPSANLVRPSSGIVQLRPPISPSSIAGSSIPSSSTYSQAVVPENRVLT 111
            PPRPSANL+R S G+VQ+RP  SPSS   SS P  +TYS  V P+ R  T
Sbjct: 68  -PPRPSANLIRLSDGVVQMRPHASPSSNRESSTP-PTTYSHTVTPDKRTRT 116

[Close]

BLAST of Lcy12g002360 vs. ExPASy TrEMBL
Match: A0A5A7URC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00720 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.1e-19
Identity = 68/108 (62.96%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 4   SRGR--ASSSRGSRPSSS--TAPPPMSADQYAMDLGFTPVTRSRSRQSGIRPMPPMESST 63
           +RGR  ++SS+G+ PSSS  +A  PM++DQYAMDL FT VTRSRSR S IR   P ESST
Sbjct: 8   ARGRTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTGSPTESST 67

Query: 64  PPPRPSANLVRPSSGIVQLRPPISPSSIAGSSIPSSSTYSQAVVPENR 108
            PPRP ANL+RPS G+VQ+RPP SPSS   SS P  +TYSQAV P+ R
Sbjct: 68  -PPRPLANLIRPSGGVVQMRPPTSPSSNRESSTP-PTTYSQAVTPDKR 113

[Close]

BLAST of Lcy12g002360 vs. NCBI nr
Match: KAA0049709.1 (hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 9.1e-21
Identity = 70/108 (64.81%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 4   SRGR--ASSSRGSRPSSS--TAPPPMSADQYAMDLGFTPVTRSRSRQSGIRPMPPMESST 63
           +RGR  ++SS+G+RPSSS  + P PMSADQYAMDLGFT VTRSRSR S IR   P ESST
Sbjct: 8   ARGRTNSTSSKGNRPSSSSNSTPSPMSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESST 67

Query: 64  PPPRPSANLVRPSSGIVQLRPPISPSSIAGSSIPSSSTYSQAVVPENR 108
            PP+PS NL+RPS G+VQ+R P+SPSS   SS P  +TYSQAV P+ R
Sbjct: 68  -PPKPSTNLIRPSGGVVQMRSPVSPSSNRKSSTP-PTTYSQAVTPDKR 113

[Close]

BLAST of Lcy12g002360 vs. NCBI nr
Match: TYK11076.1 (hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-20
Identity = 68/105 (64.76%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 5   RGRASSSRGSRPSSS--TAPPPMSADQYAMDLGFTPVTRSRSRQSGIRPMPPMESSTPPP 64
           R  ++SS+G+RPSSS  +AP PMSADQY MDLGFT V RSRSR S IR   P ESST PP
Sbjct: 11  RTNSTSSKGNRPSSSSNSAPSPMSADQYEMDLGFTTVIRSRSRSSSIRTESPTESST-PP 70

Query: 65  RPSANLVRPSSGIVQLRPPISPSSIAGSSIPSSSTYSQAVVPENR 108
           RP ANL+RPS  +VQ+RPP SPSS   SS P  +TYSQAV P+ R
Sbjct: 71  RPLANLIRPSGRVVQMRPPASPSSNRESSTP-PTTYSQAVTPDKR 113

[Close]

BLAST of Lcy12g002360 vs. NCBI nr
Match: KAA0043136.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-19
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 4   SRGR--ASSSRGSRP--SSSTAPPPMSADQYAMDLGFTPVTRSRSRQSGIRPMPPMESST 63
           +RGR  ++SS+G+RP  SS++AP P+SADQYAMDLGFT VTR  SR  GI    P ESST
Sbjct: 8   ARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESST 67

Query: 64  PPPRPSANLVRPSSGIVQLRPPISPSSIAGSSIPSSSTYSQAVVPENR 108
            PPRPS NL+RPSSG+VQ+RPP SPSS   SS P  +TYSQAV P+ R
Sbjct: 68  -PPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP-PTTYSQAVTPDKR 113

[Close]

BLAST of Lcy12g002360 vs. NCBI nr
Match: KAA0056259.1 (hypothetical protein E6C27_scaffold226G00270 [Cucumis melo var. makuwa] >TYK05242.1 hypothetical protein E5676_scaffold108G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-19
Identity = 70/111 (63.06%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 4   SRGR--ASSSRGSRPSSST--APPPMSADQYAMDLGFTPVTRSRSRQSGIRPMPPMESST 63
           +RGR  ++SS+G+RPSSS+  AP PMSADQYAMDL FT +TRSRSR SGIR   P ESST
Sbjct: 8   ARGRTNSTSSKGNRPSSSSNFAPSPMSADQYAMDLEFTTITRSRSRSSGIRIGSPTESST 67

Query: 64  PPPRPSANLVRPSSGIVQLRPPISPSSIAGSSIPSSSTYSQAVVPENRVLT 111
            PPRPSANL+R S G+VQ+RP  SPSS   SS P  +TYS  V P+ R  T
Sbjct: 68  -PPRPSANLIRLSDGVVQMRPHASPSSNRESSTP-PTTYSHTVTPDKRTRT 116

[Close]

BLAST of Lcy12g002360 vs. NCBI nr
Match: KAA0056175.1 (hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 6.5e-19
Identity = 68/108 (62.96%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 4   SRGR--ASSSRGSRPSSS--TAPPPMSADQYAMDLGFTPVTRSRSRQSGIRPMPPMESST 63
           +RGR  ++SS+G+ PSSS  +A  PM++DQYAMDL FT VTRSRSR S IR   P ESST
Sbjct: 8   ARGRTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTGSPTESST 67

Query: 64  PPPRPSANLVRPSSGIVQLRPPISPSSIAGSSIPSSSTYSQAVVPENR 108
            PPRP ANL+RPS G+VQ+RPP SPSS   SS P  +TYSQAV P+ R
Sbjct: 68  -PPRPLANLIRPSGGVVQMRPPTSPSSNRESSTP-PTTYSQAVTPDKR 113

The following BLAST results are available for this feature:

BLAST of Lcy12g002360 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g002360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8A0	4.4e-21	64.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CKX1	2.8e-20	64.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TM80	1.4e-19	63.89	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7URX0	1.4e-19	63.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7URC1	3.1e-19	62.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lcy12g002360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049709.1	9.1e-21	64.81	hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]	[more]
TYK11076.1	5.9e-20	64.76	hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa]	[more]
KAA0043136.1	2.9e-19	63.89	putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative...	[more]
KAA0056259.1	2.9e-19	63.06	hypothetical protein E6C27_scaffold226G00270 [Cucumis melo var. makuwa] >TYK0524...	[more]
KAA0056175.1	6.5e-19	62.96	hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy12g002360 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g002360.1	Lcy12g002360.1	mRNA