Lcy12g002180 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g002180
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ulp1 protease family protein
Location	Chr12: 5761002 .. 5761282 (-)
RNA-Seq Expression	Lcy12g002180
Synteny	Lcy12g002180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATAGACTCTTTAGTGGCACTGAATTCAGAGACAGACATAGCGAAGGAGTTTACTATGGTCTGCACCATTTTTTCAAGATTGTTGGTGAGGTGCGATGTTACGAAGGAGAAACCGTCTCTTCCACTAGATTCTTGGTGGTTTCAAAGGAAGACCCAAGTGTCACAACAACGAGATAGTGGGGATTGTGGGGTCTTTACTGTAAAATTTATAGAATATGACGTCACAGGATCCGATTTAGATAGTCTTAGATGGAGTTTTGTAGGAGATAATATGTT

mRNA sequence

ATGTTGATAGACTCTTTAGTGGCACTGAATTCAGAGACAGACATAGCGAAGGAGTTTACTATGGTCTGCACCATTTTTTCAAGATTGTTGGTGAGGTGCGATGTTACGAAGGAGAAACCGTCTCTTCCACTAGATTCTTGGTGGTTTCAAAGGAAGACCCAAGTGTCACAACAACGAGATAGTGGGGATTGTGGGGTCTTTACTGTAAAATTTATAGAATATGACGTCACAGGATCCGATTTAGATAGTCTTAGATGGAGTTTTGTAGGAGATAATATGTT

Coding sequence (CDS)

ATGTTGATAGACTCTTTAGTGGCACTGAATTCAGAGACAGACATAGCGAAGGAGTTTACTATGGTCTGCACCATTTTTTCAAGATTGTTGGTGAGGTGCGATGTTACGAAGGAGAAACCGTCTCTTCCACTAGATTCTTGGTGGTTTCAAAGGAAGACCCAAGTGTCACAACAACGAGATAGTGGGGATTGTGGGGTCTTTACTGTAAAATTTATAGAATATGACGTCACAGGATCCGATTTAGATAGTCTTAGATGGAGTTTTGTAGGAGATAATATGTT

Protein sequence

MLIDSLVALNSETDIAKEFTMVCTIFSRLLVRCDVTKEKPSLPLDSWWFQRKTQVSQQRDSGDCGVFTVKFIEYDVTGSDLDSLRWSFVGDNM

Homology

[Close]

BLAST of Lcy12g002180 vs. ExPASy TrEMBL
Match: A0A6J1DPE8 (uncharacterized protein LOC111022296 OS=Momordica charantia OX=3673 GN=LOC111022296 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.3e-09
Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 4   DSLVALNSETDIAKEFTMVCTIFSRLLVRCDVTKEKPSLPLDSWWFQRKTQVSQQRDSGD 63
           DSL+A+  +  + ++  ++  +   LL +      +P+LP+  W   R T   QQ  SGD
Sbjct: 58  DSLMAITPDASLEEQLNVMRAVIPPLLHKSQAITVRPNLPMTPWRISRVTSTPQQFGSGD 117

Query: 64  CGVFTVKFIEYDVTGSDLDSLR 86
           CG+F VK+ EYDVTG+ L++LR
Sbjct: 118 CGIFCVKYFEYDVTGTSLETLR 139

[Close]

BLAST of Lcy12g002180 vs. ExPASy TrEMBL
Match: A0A6J1DQZ3 (uncharacterized protein LOC111023442 OS=Momordica charantia OX=3673 GN=LOC111023442 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.3e-09
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 4   DSLVALNSETDIAKEFTMVCTIFSRLLVRCDVTKEKPSLPLDSWWFQRKTQVSQQRDSGD 63
           DSL A+ S   + ++  ++ T+   LL +  V   +P+LP+  W  +R T   +Q  SGD
Sbjct: 48  DSLRAITSYASLEEQLKVMHTVIPSLLHKSQVIAVRPNLPMTPWRIRRVTSTPEQFSSGD 107

Query: 64  CGVFTVKFIEYDVTGSDLDSLR 86
           CG+F VK+ EYDVT + L++LR
Sbjct: 108 CGIFCVKYFEYDVTWTSLETLR 129

[Close]

BLAST of Lcy12g002180 vs. ExPASy TrEMBL
Match: A0A6J1CJT2 (uncharacterized protein LOC111012067 OS=Momordica charantia OX=3673 GN=LOC111012067 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 31/82 (37.80%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 4   DSLVALNSETDIAKEFTMVCTIFSRLLVRCDVTKEKPSLPLDSWWFQRKTQVSQQRDSGD 63
           DSL A+  +  + ++  ++ T+   LL +  V    P+LP+  W  +R T   QQ  S D
Sbjct: 48  DSLRAITLDASLEEQLEVMRTVIPSLLHKSQVIAVHPNLPMIPWRIRRVTSAPQQFGSRD 107

Query: 64  CGVFTVKFIEYDVTGSDLDSLR 86
           C +F VK+ EYDVTG+ L++LR
Sbjct: 108 CDIFCVKYFEYDVTGTSLETLR 129

[Close]

BLAST of Lcy12g002180 vs. ExPASy TrEMBL
Match: A0A6J1DLV0 (uncharacterized protein LOC111021646 OS=Momordica charantia OX=3673 GN=LOC111021646 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-06
Identity = 30/84 (35.71%), Postives = 43/84 (51.19%), Query Frame = 0


Query: 4   DSLVALNSETDIAKEFTMVCTIFSRLLVRCDVTKEKPSLPLDSWWFQRKTQVSQQRDSGD 63
           DS + +     + +E   + TI   L+ R  V   KP++PL  W  +R +   QQ   GD
Sbjct: 110 DSFMNMTPLPQLEQELKPMITIIPTLICRVGVHLYKPNIPLTPWRIRRVSSAPQQGMDGD 169

Query: 64  CGVFTVKFIEYDVTGSDLDSLRWS 88
           CG+F + F EYDVT    D+L  S
Sbjct: 170 CGIFCINFFEYDVTSCSFDTLTQS 193

[Close]

BLAST of Lcy12g002180 vs. ExPASy TrEMBL
Match: A0A6J1D492 (uncharacterized protein LOC111016890 OS=Momordica charantia OX=3673 GN=LOC111016890 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.4e-06
Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 0


Query: 4   DSLVALNSETDIAKEFTMVCTIFSRLLVRCDVTKEKPSLPLDSWWFQRKTQVSQQRDSGD 63
           DSL       ++ KE   +CTI   LL    +   +P LP+  W   R+ +V QQ    D
Sbjct: 68  DSLQTATPLDELEKELKPMCTILPTLLHHGGIFSVRPDLPVVPWRV-RRVRVPQQSSVTD 127

Query: 64  CGVFTVKFIEYDVTGSDLDSL 85
           CG+F V++ EYD TGS++D+L
Sbjct: 128 CGIFYVRYFEYDATGSNMDTL 147

[Close]

BLAST of Lcy12g002180 vs. NCBI nr
Match: XP_038882332.1 (uncharacterized protein LOC120073583 [Benincasa hispida])

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 1   MLIDSLVALNSETDIAKEFTMVCTIFSRLLVRCDVTKEKPSLPLDSWWFQRKTQVSQQRD 60
           ++ DSL+AL+   D+  E  +VC  F  LL+      E  +L +D W  +R    SQQ +
Sbjct: 113 IMFDSLIALHLNADLECEMRLVCKNFPGLLI-VGAVMESHNLLIDRWTLRRDAFRSQQHE 172

Query: 61  SGDCGVFTVKFIEYDVTGSDLDSL 85
           SGDCG+FT KF EYDVTGS + +L
Sbjct: 173 SGDCGMFTYKFFEYDVTGSKMGTL 195

[Close]

BLAST of Lcy12g002180 vs. NCBI nr
Match: XP_022155154.1 (uncharacterized protein LOC111022296 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-09
Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 4   DSLVALNSETDIAKEFTMVCTIFSRLLVRCDVTKEKPSLPLDSWWFQRKTQVSQQRDSGD 63
           DSL+A+  +  + ++  ++  +   LL +      +P+LP+  W   R T   QQ  SGD
Sbjct: 58  DSLMAITPDASLEEQLNVMRAVIPPLLHKSQAITVRPNLPMTPWRISRVTSTPQQFGSGD 117

Query: 64  CGVFTVKFIEYDVTGSDLDSLR 86
           CG+F VK+ EYDVTG+ L++LR
Sbjct: 118 CGIFCVKYFEYDVTGTSLETLR 139

[Close]

BLAST of Lcy12g002180 vs. NCBI nr
Match: XP_038885861.1 (sentrin-specific protease [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-09
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 1   MLIDSLVALNSETDIAKEFTMVCTIFSRLLVRCDVTKEKPSLPLDSWWFQRKTQVSQQRD 60
           ++ DSL+ L+   D+  E   +C  F  LL+      E  +L +D W  +R   V QQ  
Sbjct: 84  IVFDSLIVLHLNADLEHEMRSLCKNFLGLLI-ASAVMESHNLLIDRWTLRRDAFVPQQDK 143

Query: 61  SGDCGVFTVKFIEYDVTGSDLDSL 85
           SGDCG+FT KF EYDVTGS +D+L
Sbjct: 144 SGDCGMFTCKFFEYDVTGSKMDTL 166

[Close]

BLAST of Lcy12g002180 vs. NCBI nr
Match: XP_022156568.1 (uncharacterized protein LOC111023442 [Momordica charantia])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 4   DSLVALNSETDIAKEFTMVCTIFSRLLVRCDVTKEKPSLPLDSWWFQRKTQVSQQRDSGD 63
           DSL A+ S   + ++  ++ T+   LL +  V   +P+LP+  W  +R T   +Q  SGD
Sbjct: 48  DSLRAITSYASLEEQLKVMHTVIPSLLHKSQVIAVRPNLPMTPWRIRRVTSTPEQFSSGD 107

Query: 64  CGVFTVKFIEYDVTGSDLDSLR 86
           CG+F VK+ EYDVT + L++LR
Sbjct: 108 CGIFCVKYFEYDVTWTSLETLR 129

[Close]

BLAST of Lcy12g002180 vs. NCBI nr
Match: XP_022141784.1 (uncharacterized protein LOC111012067 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-07
Identity = 31/82 (37.80%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 4   DSLVALNSETDIAKEFTMVCTIFSRLLVRCDVTKEKPSLPLDSWWFQRKTQVSQQRDSGD 63
           DSL A+  +  + ++  ++ T+   LL +  V    P+LP+  W  +R T   QQ  S D
Sbjct: 48  DSLRAITLDASLEEQLEVMRTVIPSLLHKSQVIAVHPNLPMIPWRIRRVTSAPQQFGSRD 107

Query: 64  CGVFTVKFIEYDVTGSDLDSLR 86
           C +F VK+ EYDVTG+ L++LR
Sbjct: 108 CDIFCVKYFEYDVTGTSLETLR 129

[Close]

BLAST of Lcy12g002180 vs. TAIR 10
Match: AT5G45570.1 (Ulp1 protease family protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.1e-04
Identity = 22/81 (27.16%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 4   DSLVALNSETDIAKEFTMVCTIFSRLLVRCDVTKEKPSLPLDSWWFQRKTQVSQQRDSGD 63
           DS+ +L ++T++A +   V T+   +L     +K++        W +R T++ +  D GD
Sbjct: 798 DSIPSLTTDTEMAIQCMFVMTMIPAMLSSFIPSKQRRRSYSKLEW-KRITKIPENLDPGD 857

Query: 64  CGVFTVKFIEYDVTGSDLDSL 85
           C ++++K+IE    G   D L
Sbjct: 858 CAIYSIKYIECLALGKSFDGL 877

The following BLAST results are available for this feature:

BLAST of Lcy12g002180 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g002180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPE8	3.3e-09	37.80	uncharacterized protein LOC111022296 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DQZ3	7.3e-09	39.02	uncharacterized protein LOC111023442 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CJT2	1.8e-07	37.80	uncharacterized protein LOC111012067 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1DLV0	2.0e-06	35.71	uncharacterized protein LOC111021646 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1D492	3.4e-06	38.27	uncharacterized protein LOC111016890 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of Lcy12g002180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882332.1	2.3e-09	44.05	uncharacterized protein LOC120073583 [Benincasa hispida]	[more]
XP_022155154.1	6.7e-09	37.80	uncharacterized protein LOC111022296 [Momordica charantia]	[more]
XP_038885861.1	6.7e-09	42.86	sentrin-specific protease [Benincasa hispida]	[more]
XP_022156568.1	1.5e-08	39.02	uncharacterized protein LOC111023442 [Momordica charantia]	[more]
XP_022141784.1	3.7e-07	37.80	uncharacterized protein LOC111012067 [Momordica charantia]	[more]

BLAST of Lcy12g002180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45570.1	4.1e-04	27.16	Ulp1 protease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.395.10	Adenoviral Proteinase; Chain A	coord: 1..92 e-value: 7.1E-9 score: 37.3
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 3..75 e-value: 2.2E-9 score: 37.5
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PROSITE	PS50600	ULP_PROTEASE	coord: 1..75 score: 8.55532
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 3..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g002180.1	Lcy12g002180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity