Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATTGTACCTAAATTCTCCCGGAAGGATTACTTTCCAGCAGCCTTAACTTGTTGTTCCCACCTAAATAACACTGTAAGAAAGATAAAGGCAAAACTGACCACTACCCAATTGGACATGTTTAGGCAAACCGTTTTTGGACCCCTGTTAGATACCTCTATTATTTTTAATGGTCAACTTGTTCATTACATTCTGCTTAGGGAAGTTGACGAGACTAGGGAAGATGTAATTAGTTTTGAGCTGTTGGGAAAGAAGATTTCATTTGGTCAGAGGGAGTTTGACCTTATCACCGGTCTTAGACATGCAATTGCACCGGTTAGGAGACACTCAGCGGGTAATAGGCTTAGAGAAACCTATTTGGATAATAGCATAACTATGAGATGTGGGAAGTTAGATAGTTTATACCCTAGATTAGAATTTCAAGCTGAGGAGGATGGAGTGAAGATGTCTATATTTTCCTTTATTGAGCTTGTGATGATGGGGAGGGAGAAGAAACAGTTAACTGACACATCCCTATTGAATGTAATCGACGATTGGATTGCCTTCTATAACGAGGATGGAGCACCATAA
mRNA sequence
ATGGAAATTGTACCTAAATTCTCCCGGAAGGATTACTTTCCAGCAGCCTTAACTTGTTGTTCCCACCTAAATAACACTGTAAGAAAGATAAAGGCAAAACTGACCACTACCCAATTGGACATGTTTAGGCAAACCGTTTTTGGACCCCTGTTAGATACCTCTATTATTTTTAATGGTCAACTTGTTCATTACATTCTGCTTAGGGAAGTTGACGAGACTAGGGAAGATGTAATTAGTTTTGAGCTGTTGGGAAAGAAGATTTCATTTGGTCAGAGGGAGTTTGACCTTATCACCGGTCTTAGACATGCAATTGCACCGGTTAGGAGACACTCAGCGGGTAATAGGCTTAGAGAAACCTATTTGGATAATAGCATAACTATGAGATGTGGGAAGTTAGATAGTTTATACCCTAGATTAGAATTTCAAGCTGAGGAGGATGGAGTGAAGATGTCTATATTTTCCTTTATTGAGCTTGTGATGATGGGGAGGGAGAAGAAACAGTTAACTGACACATCCCTATTGAATGTAATCGACGATTGGATTGCCTTCTATAACGAGGATGGAGCACCATAA
Coding sequence (CDS)
ATGGAAATTGTACCTAAATTCTCCCGGAAGGATTACTTTCCAGCAGCCTTAACTTGTTGTTCCCACCTAAATAACACTGTAAGAAAGATAAAGGCAAAACTGACCACTACCCAATTGGACATGTTTAGGCAAACCGTTTTTGGACCCCTGTTAGATACCTCTATTATTTTTAATGGTCAACTTGTTCATTACATTCTGCTTAGGGAAGTTGACGAGACTAGGGAAGATGTAATTAGTTTTGAGCTGTTGGGAAAGAAGATTTCATTTGGTCAGAGGGAGTTTGACCTTATCACCGGTCTTAGACATGCAATTGCACCGGTTAGGAGACACTCAGCGGGTAATAGGCTTAGAGAAACCTATTTGGATAATAGCATAACTATGAGATGTGGGAAGTTAGATAGTTTATACCCTAGATTAGAATTTCAAGCTGAGGAGGATGGAGTGAAGATGTCTATATTTTCCTTTATTGAGCTTGTGATGATGGGGAGGGAGAAGAAACAGTTAACTGACACATCCCTATTGAATGTAATCGACGATTGGATTGCCTTCTATAACGAGGATGGAGCACCATAA
Protein sequence
MEIVPKFSRKDYFPAALTCCSHLNNTVRKIKAKLTTTQLDMFRQTVFGPLLDTSIIFNGQLVHYILLREVDETREDVISFELLGKKISFGQREFDLITGLRHAIAPVRRHSAGNRLRETYLDNSITMRCGKLDSLYPRLEFQAEEDGVKMSIFSFIELVMMGREKKQLTDTSLLNVIDDWIAFYNEDGAP
Homology
BLAST of Lcy12g002080 vs. ExPASy TrEMBL
Match:
A0A6J1DJX9 (uncharacterized protein LOC111020757 OS=Momordica charantia OX=3673 GN=LOC111020757 PE=4 SV=1)
HSP 1 Score: 206.1 bits (523), Expect = 1.3e-49
Identity = 96/179 (53.63%), Postives = 129/179 (72.07%), Query Frame = 0
Query: 9 RKDYFPAALTCCSHLNNTVRKIKAKLTTTQLDMFRQTVFGPLLDTSIIFNGQLVHYILLR 68
R D+FPA LT +H++ T +IKA+LT TQLDMFRQT FGP+LD ++FNG L+H++LLR
Sbjct: 9 RNDWFPATLTNLAHIDKTSTRIKARLTPTQLDMFRQTCFGPILDIDVVFNGPLIHHLLLR 68
Query: 69 EVDETREDVISFELLGKKISFGQREFDLITGLRHAIAPVRRHSAGNRLRETYLDNSITMR 128
EV+E R+DVISF+L GK++SFG+REFDLITGL H + V H G RLR Y + + ++
Sbjct: 69 EVEEPRQDVISFDLFGKRVSFGKREFDLITGLSHRMNRVDNHIPGRRLRARYFKDGVRVK 128
Query: 129 CGKLDSLYPRLEFQAEEDGVKMSIFSFIELVMMGREKKQLTDTSLLNVIDDWIAFYNED 188
C +L+ ++ F +ED VK+ I FIEL MMG+E+KQ DT+LL V+D W F N D
Sbjct: 129 CSELEKIFLEDVFYDDEDVVKVRIVYFIELAMMGKERKQFIDTALLGVVDRWEVFCNYD 187
BLAST of Lcy12g002080 vs. ExPASy TrEMBL
Match:
A0A6J1DWQ3 (uncharacterized protein LOC111023842 OS=Momordica charantia OX=3673 GN=LOC111023842 PE=4 SV=1)
HSP 1 Score: 200.7 bits (509), Expect = 5.6e-48
Identity = 93/172 (54.07%), Postives = 126/172 (73.26%), Query Frame = 0
Query: 9 RKDYFPAALTCCSHLNNTVRKIKAKLTTTQLDMFRQTVFGPLLDTSIIFNGQLVHYILLR 68
R D+FP LT +H++ T +IKA+LT TQLDMFRQT FGP+LD ++FNG L+H++LLR
Sbjct: 13 RNDWFPTTLTNFAHVDKTSTRIKARLTPTQLDMFRQTCFGPILDMDVVFNGPLIHHLLLR 72
Query: 69 EVDETREDVISFELLGKKISFGQREFDLITGLRHAIAPVRRHSAGNRLRETYLDNSITMR 128
EV+E R+DVISF+L GK++SFG+REFDLITGL H + V H G RLR Y +S+ ++
Sbjct: 73 EVEEPRQDVISFDLFGKRVSFGKREFDLITGLSHRMNRVDNHIPGRRLRARYFKDSVKVK 132
Query: 129 CGKLDSLYPRLEFQAEEDGVKMSIFSFIELVMMGREKKQLTDTSLLNVIDDW 181
C +L+ ++ F +ED VK+ I FIEL MMG+E+KQ DT+LL V+D W
Sbjct: 133 CSELEKIFLEDVFYDDEDVVKVGIVYFIELAMMGKERKQFIDTALLGVVDRW 184
BLAST of Lcy12g002080 vs. ExPASy TrEMBL
Match:
A0A6J1DM82 (uncharacterized protein LOC111022300 OS=Momordica charantia OX=3673 GN=LOC111022300 PE=4 SV=1)
HSP 1 Score: 197.6 bits (501), Expect = 4.7e-47
Identity = 88/180 (48.89%), Postives = 126/180 (70.00%), Query Frame = 0
Query: 8 SRKDYFPAALTCCSHLNNTVRKIKAKLTTTQLDMFRQTVFGPLLDTSIIFNGQLVHYILL 67
+R D+FP LT +H + T ++K +LT TQ+DMFRQT FGP+LD ++FNG L+H++LL
Sbjct: 8 NRDDWFPPTLTNLAHADKTTSRLKGRLTPTQIDMFRQTCFGPILDMDVVFNGPLIHHLLL 67
Query: 68 REVDETREDVISFELLGKKISFGQREFDLITGLRHAIAPVRRHSAGNRLRETYLDNSITM 127
REV+E R+D+ISF+L GK++SFG+REFDLITGL + + V G RLR Y +S+ +
Sbjct: 68 REVEEPRQDIISFDLFGKRVSFGKREFDLITGLSYRMIRVDNDIPGRRLRARYFKDSVRV 127
Query: 128 RCGKLDSLYPRLEFQAEEDGVKMSIFSFIELVMMGREKKQLTDTSLLNVIDDWIAFYNED 187
+C +L+ ++ F +ED VK+ I F+EL MMG+E+KQ D +LL V+D W F N D
Sbjct: 128 KCSELEKIFMETVFYDDEDAVKVGIVYFVELAMMGKERKQFIDATLLGVVDRWELFCNHD 187
BLAST of Lcy12g002080 vs. ExPASy TrEMBL
Match:
A0A6J1CZE8 (uncharacterized protein LOC111015600 OS=Momordica charantia OX=3673 GN=LOC111015600 PE=4 SV=1)
HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 94/179 (52.51%), Postives = 127/179 (70.95%), Query Frame = 0
Query: 9 RKDYFPAALTCCSHLNNTVRKIKAKLTTTQLDMFRQTVFGPLLDTSIIFNGQLVHYILLR 68
R D+FPA LT +H++ T +IKA+LT TQLDMFRQT FGP+LD ++FNG L+H++LL
Sbjct: 9 RNDWFPATLTNLAHVDKTTTRIKARLTPTQLDMFRQTCFGPILDMGVVFNGPLIHHLLLI 68
Query: 69 EVDETREDVISFELLGKKISFGQREFDLITGLRHAIAPVRRHSAGNRLRETYLDNSITMR 128
EV+E R+DVISF+L K++SFG+REFDLITGL H + V H G RLR Y +S+ ++
Sbjct: 69 EVEEPRQDVISFDLFRKRVSFGKREFDLITGLSHKMNRVNNHIPGRRLRARYFKDSVRVK 128
Query: 129 CGKLDSLYPRLEFQAEEDGVKMSIFSFIELVMMGREKKQLTDTSLLNVIDDWIAFYNED 188
C +L+ ++ F +ED VK+ I FIEL MMG+E+KQ DT + V+D W AF N D
Sbjct: 129 CSELEKIFLEDIFYDDEDVVKVGIVYFIELAMMGKERKQFIDT--VGVVDRWEAFCNSD 185
BLAST of Lcy12g002080 vs. ExPASy TrEMBL
Match:
A0A6J1DN46 (uncharacterized protein LOC111022112 OS=Momordica charantia OX=3673 GN=LOC111022112 PE=4 SV=1)
HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45
Identity = 89/187 (47.59%), Postives = 131/187 (70.05%), Query Frame = 0
Query: 1 MEIVPKFSRKDYFPAALTCCSHLNNTVRKIKAKLTTTQLDMFRQTVFGPLLDTSIIFNGQ 60
M++ K ++ D+FPAAL+ SH+ T ++KA+LT +QLDMF QT FGP+L +++FNG
Sbjct: 1 MDMTVKINQDDWFPAALSNLSHVGKTSSRLKARLTPSQLDMFSQTCFGPILGMNVVFNGP 60
Query: 61 LVHYILLREVDETREDVISFELLGKKISFGQREFDLITGLRHAIAPVRRHSAGNRLRETY 120
L+H++LLREV+E R+D+ISF L G +SFG+REFDLITGLRH + V RLR Y
Sbjct: 61 LLHHLLLREVEEPRDDLISFNLFGNMVSFGKREFDLITGLRHTMNRVDXDVXNRRLRILY 120
Query: 121 LDNSITMRCGKLDSLYPRLEFQAEEDGVKMSIFSFIELVMMGREKKQLTDTSLLNVIDDW 180
+ +++C +L+ ++ F+ +ED VK++I +IEL MMG+E+KQ DTSLL ++D W
Sbjct: 121 FQDXASVKCXELEKIFLEHTFENDEDAVKIAIVYYIELAMMGKERKQKMDTSLLGIVDRW 180
Query: 181 IAFYNED 188
+ N D
Sbjct: 181 EVYCNYD 187
BLAST of Lcy12g002080 vs. NCBI nr
Match:
XP_022153201.1 (uncharacterized protein LOC111020757 [Momordica charantia])
HSP 1 Score: 206.1 bits (523), Expect = 2.7e-49
Identity = 96/179 (53.63%), Postives = 129/179 (72.07%), Query Frame = 0
Query: 9 RKDYFPAALTCCSHLNNTVRKIKAKLTTTQLDMFRQTVFGPLLDTSIIFNGQLVHYILLR 68
R D+FPA LT +H++ T +IKA+LT TQLDMFRQT FGP+LD ++FNG L+H++LLR
Sbjct: 9 RNDWFPATLTNLAHIDKTSTRIKARLTPTQLDMFRQTCFGPILDIDVVFNGPLIHHLLLR 68
Query: 69 EVDETREDVISFELLGKKISFGQREFDLITGLRHAIAPVRRHSAGNRLRETYLDNSITMR 128
EV+E R+DVISF+L GK++SFG+REFDLITGL H + V H G RLR Y + + ++
Sbjct: 69 EVEEPRQDVISFDLFGKRVSFGKREFDLITGLSHRMNRVDNHIPGRRLRARYFKDGVRVK 128
Query: 129 CGKLDSLYPRLEFQAEEDGVKMSIFSFIELVMMGREKKQLTDTSLLNVIDDWIAFYNED 188
C +L+ ++ F +ED VK+ I FIEL MMG+E+KQ DT+LL V+D W F N D
Sbjct: 129 CSELEKIFLEDVFYDDEDVVKVRIVYFIELAMMGKERKQFIDTALLGVVDRWEVFCNYD 187
BLAST of Lcy12g002080 vs. NCBI nr
Match:
XP_022157016.1 (uncharacterized protein LOC111023842 [Momordica charantia])
HSP 1 Score: 200.7 bits (509), Expect = 1.2e-47
Identity = 93/172 (54.07%), Postives = 126/172 (73.26%), Query Frame = 0
Query: 9 RKDYFPAALTCCSHLNNTVRKIKAKLTTTQLDMFRQTVFGPLLDTSIIFNGQLVHYILLR 68
R D+FP LT +H++ T +IKA+LT TQLDMFRQT FGP+LD ++FNG L+H++LLR
Sbjct: 13 RNDWFPTTLTNFAHVDKTSTRIKARLTPTQLDMFRQTCFGPILDMDVVFNGPLIHHLLLR 72
Query: 69 EVDETREDVISFELLGKKISFGQREFDLITGLRHAIAPVRRHSAGNRLRETYLDNSITMR 128
EV+E R+DVISF+L GK++SFG+REFDLITGL H + V H G RLR Y +S+ ++
Sbjct: 73 EVEEPRQDVISFDLFGKRVSFGKREFDLITGLSHRMNRVDNHIPGRRLRARYFKDSVKVK 132
Query: 129 CGKLDSLYPRLEFQAEEDGVKMSIFSFIELVMMGREKKQLTDTSLLNVIDDW 181
C +L+ ++ F +ED VK+ I FIEL MMG+E+KQ DT+LL V+D W
Sbjct: 133 CSELEKIFLEDVFYDDEDVVKVGIVYFIELAMMGKERKQFIDTALLGVVDRW 184
BLAST of Lcy12g002080 vs. NCBI nr
Match:
XP_022155158.1 (uncharacterized protein LOC111022300 [Momordica charantia])
HSP 1 Score: 197.6 bits (501), Expect = 9.7e-47
Identity = 88/180 (48.89%), Postives = 126/180 (70.00%), Query Frame = 0
Query: 8 SRKDYFPAALTCCSHLNNTVRKIKAKLTTTQLDMFRQTVFGPLLDTSIIFNGQLVHYILL 67
+R D+FP LT +H + T ++K +LT TQ+DMFRQT FGP+LD ++FNG L+H++LL
Sbjct: 8 NRDDWFPPTLTNLAHADKTTSRLKGRLTPTQIDMFRQTCFGPILDMDVVFNGPLIHHLLL 67
Query: 68 REVDETREDVISFELLGKKISFGQREFDLITGLRHAIAPVRRHSAGNRLRETYLDNSITM 127
REV+E R+D+ISF+L GK++SFG+REFDLITGL + + V G RLR Y +S+ +
Sbjct: 68 REVEEPRQDIISFDLFGKRVSFGKREFDLITGLSYRMIRVDNDIPGRRLRARYFKDSVRV 127
Query: 128 RCGKLDSLYPRLEFQAEEDGVKMSIFSFIELVMMGREKKQLTDTSLLNVIDDWIAFYNED 187
+C +L+ ++ F +ED VK+ I F+EL MMG+E+KQ D +LL V+D W F N D
Sbjct: 128 KCSELEKIFMETVFYDDEDAVKVGIVYFVELAMMGKERKQFIDATLLGVVDRWELFCNHD 187
BLAST of Lcy12g002080 vs. NCBI nr
Match:
XP_022146372.1 (uncharacterized protein LOC111015600 [Momordica charantia])
HSP 1 Score: 196.4 bits (498), Expect = 2.2e-46
Identity = 94/179 (52.51%), Postives = 127/179 (70.95%), Query Frame = 0
Query: 9 RKDYFPAALTCCSHLNNTVRKIKAKLTTTQLDMFRQTVFGPLLDTSIIFNGQLVHYILLR 68
R D+FPA LT +H++ T +IKA+LT TQLDMFRQT FGP+LD ++FNG L+H++LL
Sbjct: 9 RNDWFPATLTNLAHVDKTTTRIKARLTPTQLDMFRQTCFGPILDMGVVFNGPLIHHLLLI 68
Query: 69 EVDETREDVISFELLGKKISFGQREFDLITGLRHAIAPVRRHSAGNRLRETYLDNSITMR 128
EV+E R+DVISF+L K++SFG+REFDLITGL H + V H G RLR Y +S+ ++
Sbjct: 69 EVEEPRQDVISFDLFRKRVSFGKREFDLITGLSHKMNRVNNHIPGRRLRARYFKDSVRVK 128
Query: 129 CGKLDSLYPRLEFQAEEDGVKMSIFSFIELVMMGREKKQLTDTSLLNVIDDWIAFYNED 188
C +L+ ++ F +ED VK+ I FIEL MMG+E+KQ DT + V+D W AF N D
Sbjct: 129 CSELEKIFLEDIFYDDEDVVKVGIVYFIELAMMGKERKQFIDT--VGVVDRWEAFCNSD 185
BLAST of Lcy12g002080 vs. NCBI nr
Match:
XP_022154967.1 (uncharacterized protein LOC111022112 [Momordica charantia])
HSP 1 Score: 192.2 bits (487), Expect = 4.1e-45
Identity = 88/187 (47.06%), Postives = 131/187 (70.05%), Query Frame = 0
Query: 1 MEIVPKFSRKDYFPAALTCCSHLNNTVRKIKAKLTTTQLDMFRQTVFGPLLDTSIIFNGQ 60
M++ K ++ D+FPAAL+ SH+ T ++KA+LT +QLDMF QT FGP+L +++FNG
Sbjct: 1 MDMTVKINQDDWFPAALSNLSHVGKTSSRLKARLTPSQLDMFSQTCFGPILGMNVVFNGP 60
Query: 61 LVHYILLREVDETREDVISFELLGKKISFGQREFDLITGLRHAIAPVRRHSAGNRLRETY 120
L+H++LLREV+E R+++ISF L G +SFG+REFDLITGLRH + V RLR Y
Sbjct: 61 LLHHLLLREVEEPRDBLISFNLFGNMVSFGKREFDLITGLRHTMNRVDXDVXNRRLRILY 120
Query: 121 LDNSITMRCGKLDSLYPRLEFQAEEDGVKMSIFSFIELVMMGREKKQLTDTSLLNVIDDW 180
+ +++C +L+ ++ F+ +ED VK++I +IEL MMG+E+KQ DTSLL ++D W
Sbjct: 121 FQDXASVKCXELEKIFLEHTFENDEDAVKIAIVYYIELAMMGKERKQKMDTSLLGIVDRW 180
Query: 181 IAFYNED 188
+ N D
Sbjct: 181 EVYCNYD 187
BLAST of Lcy12g002080 vs. TAIR 10
Match:
AT5G35050.1 (Domain of unknown function (DUF1985) )
HSP 1 Score: 41.6 bits (96), Expect = 8.3e-04
Identity = 25/84 (29.76%), Postives = 41/84 (48.81%), Query Frame = 0
Query: 30 IKAKLTTTQLDMFRQTVFGPLLDTSII-------------FNGQLVHYILLREVDETRED 89
IK L+ + T GP++ + F+GQLV ++++R++ +RED
Sbjct: 42 IKEILSNSLFSRLETTFLGPIIKAGLRKAGGNQKGPNGLGFSGQLVRFLVVRQLVSSRED 101
Query: 90 VISFELLGKKISFGQREFDLITGL 101
I F + K + F EF L+TGL
Sbjct: 102 GIWFCINNKPMRFSLTEFHLVTGL 125
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DJX9 | 1.3e-49 | 53.63 | uncharacterized protein LOC111020757 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
A0A6J1DWQ3 | 5.6e-48 | 54.07 | uncharacterized protein LOC111023842 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A6J1DM82 | 4.7e-47 | 48.89 | uncharacterized protein LOC111022300 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A6J1CZE8 | 1.1e-46 | 52.51 | uncharacterized protein LOC111015600 OS=Momordica charantia OX=3673 GN=LOC111015... | [more] |
A0A6J1DN46 | 1.2e-45 | 47.59 | uncharacterized protein LOC111022112 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
Match Name | E-value | Identity | Description | |
AT5G35050.1 | 8.3e-04 | 29.76 | Domain of unknown function (DUF1985) | [more] |