Lcy12g001870 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g001870
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Pectin lyase-like superfamily protein
Location	Chr12: 4565425 .. 4567808 (+)
RNA-Seq Expression	Lcy12g001870
Synteny	Lcy12g001870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAACCGAACCGGTTCGGTTCGGTTCGGGTCGCCGGTTCGGTTCGGTTCCTTTCACCCCTAGGTAGGTCCATGCAAAAGTCCTATCGAAATTCAACTTCAAGGAACATTGCAGGCCCCAATAGATCTAACTGGAGAAGGTTGGGTTAGTTTCAAATATATCGACTACTTTACATTAACAGGTGGTGGAGTTTTAGATGGACAAGGAAAAGTAGCTTGGGAAAAAAATGATTGTGACAAAAATCCAAAATGCGACAGAATTCCCATGGTAAAGCACACTTCAATCATCGAATTAGTGTTCTTAGTACCTTTCTTTCTTTTCTAGTTTCTATATTGATTAAACTATATAATCCACATGGTTAGATTTTTAATAAAGGCCAAACCAACAACTCACAATTTCTCTTAATAAATATATATGTATGATCTTTTTTCTTTTTATCAAAAATCTGCAGACTTTGAAGCTCAGCTTTATCACAAATTCAATAGTGAGTGACATAACCTCTAAAGATAGCAAGAATTTTCATGTTAATGTTTTGGGTTGTAAAAACCTTACCTTCCAACATGTGAACATAAATGCACCCGGAGATAGTATCAATAGTGATGGAATTCACATTGGTCGTTCTCTTGGAATTAATGTCATAAATACAAACATTGGCACTGGAGATGATTGTATCTCACTTGGAGATGGAAGCAAGCAAGTAACAATTACTAATGTGACATGTGGTCCGGGACATGGTATTAGTGTAGGAAGTTTAGGAAAGTACAATGCTGAAGAACCAGTTGAGGGAATCATAGTTAAGAATTGTACATTGATGAATACATCAAATGGCGTAAGAATCAAATCATGGCCTGCTTCTCCTGTTGCTGGAACAGCTTCTGATATGCACTATGAAGATATTATTATGGTTAATGTCAGTAATCCCATTCTCATAGATCAAGAGTATTGTCCATACAACCAATGTAATAAAAAGGTACTAAACTCATGGATTTTTATTTTTTATTTTTTTATTGCATTTATAAATGTTTCAATTAAACTGAAGAAGCCTTGTTCTGTCTCTTTCTTTCCAGAGTCCATCCAAAGTCAAGATTAGTAAGGTTACTTTCAAGAATATCAGAGGTACTTCAGGTAATGCACTTGCCATCAAACTTGTTTGTAGTTCTCAGGTTCCATGTGAAGGTGTAGAGCTAGCTGACATTGACCTCACTTACAATGGAAGTGAAGGCCCTATTACATCTCAATGTTTAAATGTGAAGCCTACTATTTCTGGAAAGCAAAACCCTCCTGCATGTTCTTCTCCTGCAGCTCCTATCCTAGCTTAAACTAATTTTGTAGAGTTGACTATTTGATGCAGAAATCTTGTTACTTTTTTTATTTATTATTATATACTAAAGCTTATAGTCTAGATGATACAATTTCTTTTTTTTTTTTTTTTTGTAACTTCATAATTGTTTAACACCCAATTTCTTATAACAAATAATTGGGTGACAGAGGGTTTTCCATCCCTTATATTTATAATCCTTTTTATTTACAATAGAAGACATGTCATTAAGCTCAATTAATCCGTCAAAAAAATGTCTTGTTTAGATTGTTTTGCTATAAACACACAATACAAGGCAAAATAGGCATGTATTATCTTCTTGGTGTAACATTACTCACTCCCATGCAAGTTGGCTTTCTAATCAGCTCCTCATCAACATCGATCTTTTCCTTTGCTATTTTCATGAATGGTCTTTCTAACAAAATTGGCATACATGTACGTGAAGATTTATTGTCCATGAATATAGAAATCAATAGGAAATATCAGTTTATTAACCTACACTAAAACAACTTCTAATGGATGCACATAATAACAATCAGCTTATTGTGTATTATCACATTAGTTTCATGCAAGTTATTCAATTTAAACTCTTTGGTAAATAGACAAAAGGCATGGCATTGATTGAAATGCCTAAGTCTAACATAGCAAGCTTAATTTGCTTATTATTGATCATGCAAGTTAGTGCAAATATACTTGGATCCTTACATTTTTTTTACATAGTTCTATATCAAATAGCTAACACATTCTCACTTACCATTGACATTTCCTTCTCTTTCATATTCCCTTTCTTTGTGCACCAATTTTTTGGGAACTTTGCATTTTTGGTAATTTTCTTGACTGCATCTAAAAGTGGGATATTGACCTCCGCTTTTCTAAATATATCCAGGACCTCCTTCAGTGGTTTTAACTTACATTTTTTGAATCATAGATCTTTGCCTGAGTTTGTATTTTTTTATGTTTAACATTGCTGTTACAAGTGACAACTAGCTCTTGATTTAGTGTCTTTTTCACGCTGAACTTGTATAGATTTTTATGTTGTTGGTGAATGTTGAAGATGTATTTCTTTG

mRNA sequence

CGAACCGAACCGGTTCGGTTCGGTTCGGGTCGCCGGTTCGGTTCGGTTCCTTTCACCCCTAGGTAGGTCCATGCAAAAGTCCTATCGAAATTCAACTTCAAGGAACATTGCAGGCCCCAATAGATCTAACTGGAGAAGGTTGGGTTAGTTTCAAATATATCGACTACTTTACATTAACAGGTGGTGGAGTTTTAGATGGACAAGGAAAAGTAGCTTGGGAAAAAAATGATTGTGACAAAAATCCAAAATGCGACAGAATTCCCATGGTAAAGCACACTTCAATCATCGAATTAGTGTTCTTAGTACCTTTCTTTCTTTTCTAGTTTCTATATTGATTAAACTATATAATCCACATGGTTAGATTTTTAATAAAGGCCAAACCAACAACTCACAATTTCTCTTAATAAATATATATGTATGATCTTTTTTCTTTTTATCAAAAATCTGCAGACTTTGAAGCTCAGCTTTATCACAAATTCAATAGTGAGTGACATAACCTCTAAAGATAGCAAGAATTTTCATGTTAATGTTTTGGGTTGTAAAAACCTTACCTTCCAACATGTGAACATAAATGCACCCGGAGATAGTATCAATAGTGATGGAATTCACATTGGTCGTTCTCTTGGAATTAATGTCATAAATACAAACATTGGCACTGGAGATGATTGTATCTCACTTGGAGATGGAAGCAAGCAAGTAACAATTACTAATGTGACATGTGGTCCGGGACATGGTATTAGTGTAGGAAGTTTAGGAAAGTACAATGCTGAAGAACCAGTTGAGGGAATCATAGTTAAGAATTGTACATTGATGAATACATCAAATGGCGTAAGAATCAAATCATGGCCTGCTTCTCCTGTTGCTGGAACAGCTTCTGATATGCACTATGAAGATATTATTATGGTTAATGTCAGTAATCCCATTCTCATAGATCAAGAGTATTGTCCATACAACCAATGTAATAAAAAGGTACTAAACTCATGGATTTTTATTTTTTATTTTTTTATTGCATTTATAAATGTTTCAATTAAACTGAAGAAGCCTTGTTCTGTCTCTTTCTTTCCAGAGTCCATCCAAAGTCAAGATTAGTAAGGTTACTTTCAAGAATATCAGAGGTACTTCAGGTAATGCACTTGCCATCAAACTTGTTTGTAGTTCTCAGGTTCCATGTGAAGGTGTAGAGCTAGCTGACATTGACCTCACTTACAATGGAAGTGAAGGCCCTATTACATCTCAATGTTTAAATGTGAAGCCTACTATTTCTGGAAAGCAAAACCCTCCTGCATGTTCTTCTCCTGCAGCTCCTATCCTAGCTTAAACTAATTTTGTAGAGTTGACTATTTGATGCAGAAATCTTGTTACTTTTTTTATTTATTATTATATACTAAAGCTTATAGTCTAGATGATACAATTTCTTTTTTTTTTTTTTTTTGTAACTTCATAATTGTTTAACACCCAATTTCTTATAACAAATAATTGGGTGACAGAGGGTTTTCCATCCCTTATATTTATAATCCTTTTTATTTACAATAGAAGACATGTCATTAAGCTCAATTAATCCGTCAAAAAAATGTCTTGTTTAGATTGTTTTGCTATAAACACACAATACAAGGCAAAATAGGCATGTATTATCTTCTTGGTGTAACATTACTCACTCCCATGCAAGTTGGCTTTCTAATCAGCTCCTCATCAACATCGATCTTTTCCTTTGCTATTTTCATGAATGGTCTTTCTAACAAAATTGGCATACATGTACGTGAAGATTTATTGTCCATGAATATAGAAATCAATAGGAAATATCAGTTTATTAACCTACACTAAAACAACTTCTAATGGATGCACATAATAACAATCAGCTTATTGTGTATTATCACATTAGTTTCATGCAAGTTATTCAATTTAAACTCTTTGGTAAATAGACAAAAGGCATGGCATTGATTGAAATGCCTAAGTCTAACATAGCAAGCTTAATTTGCTTATTATTGATCATGCAAGTTAGTGCAAATATACTTGGATCCTTACATTTTTTTTACATAGTTCTATATCAAATAGCTAACACATTCTCACTTACCATTGACATTTCCTTCTCTTTCATATTCCCTTTCTTTGTGCACCAATTTTTTGGGAACTTTGCATTTTTGGTAATTTTCTTGACTGCATCTAAAAGTGGGATATTGACCTCCGCTTTTCTAAATATATCCAGGACCTCCTTCAGTGGTTTTAACTTACATTTTTTGAATCATAGATCTTTGCCTGAGTTTGTATTTTTTTATGTTTAACATTGCTGTTACAAGTGACAACTAGCTCTTGATTTAGTGTCTTTTTCACGCTGAACTTGTATAGATTTTTATGTTGTTGGTGAATGTTGAAGATGTATTTCTTTG

Coding sequence (CDS)

ATGATCTTTTTTCTTTTTATCAAAAATCTGCAGACTTTGAAGCTCAGCTTTATCACAAATTCAATAGTGAGTGACATAACCTCTAAAGATAGCAAGAATTTTCATGTTAATGTTTTGGGTTGTAAAAACCTTACCTTCCAACATGTGAACATAAATGCACCCGGAGATAGTATCAATAGTGATGGAATTCACATTGGTCGTTCTCTTGGAATTAATGTCATAAATACAAACATTGGCACTGGAGATGATTGTATCTCACTTGGAGATGGAAGCAAGCAAGTAACAATTACTAATGTGACATGTGGTCCGGGACATGGTATTAGTGTAGGAAGTTTAGGAAAGTACAATGCTGAAGAACCAGTTGAGGGAATCATAGTTAAGAATTGTACATTGATGAATACATCAAATGGCGTAAGAATCAAATCATGGCCTGCTTCTCCTGTTGCTGGAACAGCTTCTGATATGCACTATGAAGATATTATTATGGTTAATGTCAGTAATCCCATTCTCATAGATCAAGAGTATTGTCCATACAACCAATGTAATAAAAAGGTACTAAACTCATGGATTTTTATTTTTTATTTTTTTATTGCATTTATAAATGTTTCAATTAAACTGAAGAAGCCTTGTTCTGTCTCTTTCTTTCCAGAGTCCATCCAAAGTCAAGATTAG

Protein sequence

MIFFLFIKNLQTLKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGINVINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTLMNTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKKVLNSWIFIFYFFIAFINVSIKLKKPCSVSFFPESIQSQD

Homology

[Close]

BLAST of Lcy12g001870 vs. ExPASy Swiss-Prot
Match: Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.0e-65
Identity = 112/169 (66.27%), Postives = 136/169 (80.47%), Query Frame = 0


Query: 16  SFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGINVIN 75
           +F+ NSIV  +TSKDSKNFHV V GCKN+TF    I APGDS N+DGIH+G+S  + ++N
Sbjct: 153 NFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDVKILN 212

Query: 76  TNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTLMNTS 135
           TNIGTGDDC+S+GDGSKQ+T+  V CGPGHG+SVGSLGK+  EE VEGI VKNCTL  T 
Sbjct: 213 TNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATD 272

Query: 136 NGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKK 185
           NGVRIK+WP +P   T SD+H+EDI M NV NP++IDQEY P+NQC+KK
Sbjct: 273 NGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKK 321

[Close]

BLAST of Lcy12g001870 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.8e-64
Identity = 117/176 (66.48%), Postives = 140/176 (79.55%), Query Frame = 0


Query: 13  LKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGIN 72
           L+L  +TNSI+ D+T+ DSKNFHVNV+GCKNLTF+   I+A   SIN+DGIHIGRS G+N
Sbjct: 110 LRLYAVTNSILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVN 169

Query: 73  VINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTLM 132
           +INT I TGDDCISLGDGSK + ITN+TCGPGHGISVGSLG+Y  EE V GI VKNCT+ 
Sbjct: 170 IINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTIT 229

Query: 133 NTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKKVLNS 189
            + NGVRIK+WP S   G AS+MH++DI M +V  PILIDQ YCPYNQC  +V +S
Sbjct: 230 GSQNGVRIKTWPKSE-PGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSS 284

[Close]

BLAST of Lcy12g001870 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.9e-60
Identity = 102/171 (59.65%), Postives = 136/171 (79.53%), Query Frame = 0


Query: 13  LKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGIN 72
           ++  F+TN+++ DITSKDSK FH+NV  CKN+T + + I AP +S N+DGIH+G+S G+N
Sbjct: 152 IRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVN 211

Query: 73  VINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTLM 132
           +I ++I TGDDCIS+GDG+K + I  +TCGPGHGIS+GSLGK+  EEPVEGI + NCT+ 
Sbjct: 212 IIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTIT 271

Query: 133 NTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNK 184
           NTSNG RIK+WP     G  S++H+EDI M NVS+PILIDQ+YCP+N+C K
Sbjct: 272 NTSNGARIKTWPGEH-GGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKK 321

[Close]

BLAST of Lcy12g001870 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.5e-60
Identity = 102/171 (59.65%), Postives = 136/171 (79.53%), Query Frame = 0


Query: 13  LKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGIN 72
           ++  F+TN+++ DITSKDSK FH+NV  CKN+T + + I AP +S N+DGIH+G+S G+N
Sbjct: 152 IRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVN 211

Query: 73  VINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTLM 132
           +I ++I TGDDCIS+GDG+K + I  +TCGPGHGIS+GSLGK+  EEPVEGI + NCT+ 
Sbjct: 212 IIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTIT 271

Query: 133 NTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNK 184
           NTSNG RIK+WP     G  S++H+EDI M NVS+PILIDQ+YCP+N+C K
Sbjct: 272 NTSNGARIKTWPGEH-GGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKK 321

[Close]

BLAST of Lcy12g001870 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.1e-59
Identity = 101/172 (58.72%), Postives = 134/172 (77.91%), Query Frame = 0


Query: 13  LKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGIN 72
           L+  F+ +++V DITS +SK FH+NVL C+++TFQHV + APG SIN+DGIH+G S G+ 
Sbjct: 131 LRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKGVT 190

Query: 73  VINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTLM 132
           + NT I TGDDCIS+G GS+ VTIT V CGPGHGIS+GSLG+YN E+ V GI VK CT  
Sbjct: 191 ITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGITVKGCTFS 250

Query: 133 NTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKK 185
            T NGVR+K+WP SP  G A+D+ ++D+ M NV NP+++DQEYCPY QC+++
Sbjct: 251 GTMNGVRVKTWPNSP-PGAATDLTFQDLTMNNVQNPVILDQEYCPYGQCSRQ 301

[Close]

BLAST of Lcy12g001870 vs. ExPASy TrEMBL
Match: A0A6J1DUC6 (exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111024096 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 3.0e-85
Identity = 151/173 (87.28%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 12  TLKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGI 71
           +L+ SFITNSIVSDITSKDSKNFHV +LGC NLTFQHVN+NAPGDSIN+DGIHIGRS GI
Sbjct: 145 SLRFSFITNSIVSDITSKDSKNFHVQILGCNNLTFQHVNVNAPGDSINTDGIHIGRSTGI 204

Query: 72  NVINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTL 131
           N+++TNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLG+Y AEEPVEGI   NCT+
Sbjct: 205 NILSTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGRYTAEEPVEGIRATNCTI 264

Query: 132 MNTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKK 185
           MNTSNGVRIK+WPASP AGTASDMH+ED+IMVNVSNPILIDQEYCPYNQCNKK
Sbjct: 265 MNTSNGVRIKTWPASPTAGTASDMHFEDMIMVNVSNPILIDQEYCPYNQCNKK 317

[Close]

BLAST of Lcy12g001870 vs. ExPASy TrEMBL
Match: A0A5A7T7B3 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001590 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.2e-81
Identity = 145/173 (83.82%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 13  LKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGIN 72
           LK SFI N+IVSDITSKDSKNFH+ VLGC NLTFQHVN+NAP  SIN+DGIHIGRSLGIN
Sbjct: 193 LKFSFIKNAIVSDITSKDSKNFHIQVLGCNNLTFQHVNVNAPETSINTDGIHIGRSLGIN 252

Query: 73  VINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTLM 132
           ++NTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLG+YN EEPVEG+ VKNCTL 
Sbjct: 253 ILNTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGRYNLEEPVEGLQVKNCTLT 312

Query: 133 NTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKKV 186
            T+NG+RIK+WPASP AG ASDMHYED++M NV NPILIDQEYCPYNQCNK+V
Sbjct: 313 GTTNGLRIKTWPASPAAGVASDMHYEDVVMNNVMNPILIDQEYCPYNQCNKQV 365

[Close]

BLAST of Lcy12g001870 vs. ExPASy TrEMBL
Match: A0A1S3CC08 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103498752 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.2e-81
Identity = 145/173 (83.82%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 13  LKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGIN 72
           LK SFI N+IVSDITSKDSKNFH+ VLGC NLTFQHVN+NAP  SIN+DGIHIGRSLGIN
Sbjct: 141 LKFSFIKNAIVSDITSKDSKNFHIQVLGCNNLTFQHVNVNAPETSINTDGIHIGRSLGIN 200

Query: 73  VINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTLM 132
           ++NTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLG+YN EEPVEG+ VKNCTL 
Sbjct: 201 ILNTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGRYNLEEPVEGLQVKNCTLT 260

Query: 133 NTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKKV 186
            T+NG+RIK+WPASP AG ASDMHYED++M NV NPILIDQEYCPYNQCNK+V
Sbjct: 261 GTTNGLRIKTWPASPAAGVASDMHYEDVVMNNVMNPILIDQEYCPYNQCNKQV 313

[Close]

BLAST of Lcy12g001870 vs. ExPASy TrEMBL
Match: A0A6J1DBN7 (exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111019009 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 5.5e-79
Identity = 152/218 (69.72%), Postives = 175/218 (80.28%), Query Frame = 0


Query: 12  TLKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGI 71
           +LK SFITNSIVS+ITSKDSKNFHV VLGC NLTF+HV I+APG SIN+DGIHIGRS  +
Sbjct: 149 SLKFSFITNSIVSEITSKDSKNFHVFVLGCNNLTFEHVTIDAPGHSINTDGIHIGRSNEV 208

Query: 72  NVINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTL 131
           NV++T IGTGDDCISLGDGSK VTI NVTCGPGHGISVGSLG+Y  EEPVEGIIVKNCT 
Sbjct: 209 NVLSTRIGTGDDCISLGDGSKHVTINNVTCGPGHGISVGSLGRYTVEEPVEGIIVKNCTF 268

Query: 132 MNTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKKVLNSWIF 191
            NT NGVRIK+WPASP  GTA++MHYEDIIMVNVSNPILIDQEYCPYNQCNKK+ +    
Sbjct: 269 TNTDNGVRIKTWPASPTPGTATNMHYEDIIMVNVSNPILIDQEYCPYNQCNKKIPSK--- 328

Query: 192 IFYFFIAFINV------SIKLKKPCSVSFFPESIQSQD 224
           +    ++F N+      ++ +K  CS  F  E ++  D
Sbjct: 329 VKISKVSFKNIRGSSANALAVKIICSSDFPCEGVEIAD 363

[Close]

BLAST of Lcy12g001870 vs. ExPASy TrEMBL
Match: A0A0A0KSQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G646670 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 4.6e-78
Identity = 137/174 (78.74%), Postives = 158/174 (90.80%), Query Frame = 0


Query: 13  LKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGIN 72
           LK SFI NS+VS ITSKDSKNFH+ VLGC N T Q+VN+NAPG SIN+DGIH+GR +GIN
Sbjct: 17  LKFSFIKNSVVSGITSKDSKNFHIQVLGCNNFTLQNVNVNAPGTSINTDGIHLGRCVGIN 76

Query: 73  VINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTLM 132
           ++N+NIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLG+YNAEEPVEG+ VKNCT+ 
Sbjct: 77  ILNSNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGRYNAEEPVEGLQVKNCTIT 136

Query: 133 NTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKKVL 187
            T++G+RIK+WPASP AG ASDMHYEDI+M NVSNPI+IDQEYCPYN+CNK+ L
Sbjct: 137 GTTSGLRIKTWPASPAAGVASDMHYEDIVMNNVSNPIMIDQEYCPYNKCNKQYL 190

[Close]

BLAST of Lcy12g001870 vs. NCBI nr
Match: XP_022157387.1 (exopolygalacturonase-like [Momordica charantia] >XP_022159278.1 exopolygalacturonase-like [Momordica charantia])

HSP 1 Score: 324.7 bits (831), Expect = 6.2e-85
Identity = 151/173 (87.28%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 12  TLKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGI 71
           +L+ SFITNSIVSDITSKDSKNFHV +LGC NLTFQHVN+NAPGDSIN+DGIHIGRS GI
Sbjct: 145 SLRFSFITNSIVSDITSKDSKNFHVQILGCNNLTFQHVNVNAPGDSINTDGIHIGRSTGI 204

Query: 72  NVINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTL 131
           N+++TNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLG+Y AEEPVEGI   NCT+
Sbjct: 205 NILSTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGRYTAEEPVEGIRATNCTI 264

Query: 132 MNTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKK 185
           MNTSNGVRIK+WPASP AGTASDMH+ED+IMVNVSNPILIDQEYCPYNQCNKK
Sbjct: 265 MNTSNGVRIKTWPASPTAGTASDMHFEDMIMVNVSNPILIDQEYCPYNQCNKK 317

[Close]

BLAST of Lcy12g001870 vs. NCBI nr
Match: XP_008459709.2 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 312.8 bits (800), Expect = 2.4e-81
Identity = 145/173 (83.82%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 13  LKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGIN 72
           LK SFI N+IVSDITSKDSKNFH+ VLGC NLTFQHVN+NAP  SIN+DGIHIGRSLGIN
Sbjct: 141 LKFSFIKNAIVSDITSKDSKNFHIQVLGCNNLTFQHVNVNAPETSINTDGIHIGRSLGIN 200

Query: 73  VINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTLM 132
           ++NTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLG+YN EEPVEG+ VKNCTL 
Sbjct: 201 ILNTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGRYNLEEPVEGLQVKNCTLT 260

Query: 133 NTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKKV 186
            T+NG+RIK+WPASP AG ASDMHYED++M NV NPILIDQEYCPYNQCNK+V
Sbjct: 261 GTTNGLRIKTWPASPAAGVASDMHYEDVVMNNVMNPILIDQEYCPYNQCNKQV 313

[Close]

BLAST of Lcy12g001870 vs. NCBI nr
Match: KAA0039364.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK00547.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 2.4e-81
Identity = 145/173 (83.82%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 13  LKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGIN 72
           LK SFI N+IVSDITSKDSKNFH+ VLGC NLTFQHVN+NAP  SIN+DGIHIGRSLGIN
Sbjct: 193 LKFSFIKNAIVSDITSKDSKNFHIQVLGCNNLTFQHVNVNAPETSINTDGIHIGRSLGIN 252

Query: 73  VINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTLM 132
           ++NTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLG+YN EEPVEG+ VKNCTL 
Sbjct: 253 ILNTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGRYNLEEPVEGLQVKNCTLT 312

Query: 133 NTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKKV 186
            T+NG+RIK+WPASP AG ASDMHYED++M NV NPILIDQEYCPYNQCNK+V
Sbjct: 313 GTTNGLRIKTWPASPAAGVASDMHYEDVVMNNVMNPILIDQEYCPYNQCNKQV 365

[Close]

BLAST of Lcy12g001870 vs. NCBI nr
Match: XP_022150984.1 (exopolygalacturonase-like [Momordica charantia])

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-78
Identity = 152/218 (69.72%), Postives = 175/218 (80.28%), Query Frame = 0


Query: 12  TLKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGI 71
           +LK SFITNSIVS+ITSKDSKNFHV VLGC NLTF+HV I+APG SIN+DGIHIGRS  +
Sbjct: 149 SLKFSFITNSIVSEITSKDSKNFHVFVLGCNNLTFEHVTIDAPGHSINTDGIHIGRSNEV 208

Query: 72  NVINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTL 131
           NV++T IGTGDDCISLGDGSK VTI NVTCGPGHGISVGSLG+Y  EEPVEGIIVKNCT 
Sbjct: 209 NVLSTRIGTGDDCISLGDGSKHVTINNVTCGPGHGISVGSLGRYTVEEPVEGIIVKNCTF 268

Query: 132 MNTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKKVLNSWIF 191
            NT NGVRIK+WPASP  GTA++MHYEDIIMVNVSNPILIDQEYCPYNQCNKK+ +    
Sbjct: 269 TNTDNGVRIKTWPASPTPGTATNMHYEDIIMVNVSNPILIDQEYCPYNQCNKKIPSK--- 328

Query: 192 IFYFFIAFINV------SIKLKKPCSVSFFPESIQSQD 224
           +    ++F N+      ++ +K  CS  F  E ++  D
Sbjct: 329 VKISKVSFKNIRGSSANALAVKIICSSDFPCEGVEIAD 363

[Close]

BLAST of Lcy12g001870 vs. NCBI nr
Match: XP_038889253.1 (exopolygalacturonase-like [Benincasa hispida])

HSP 1 Score: 303.1 bits (775), Expect = 1.9e-78
Identity = 142/171 (83.04%), Postives = 160/171 (93.57%), Query Frame = 0


Query: 13  LKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGIN 72
           L+ +FITNSIVSDITSKDSK+FHVNVLGCKNLTFQHVNINAPG S N+DGIHI RS+GIN
Sbjct: 146 LRFNFITNSIVSDITSKDSKSFHVNVLGCKNLTFQHVNINAPGYSPNTDGIHITRSIGIN 205

Query: 73  VINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTLM 132
           V NTNI TGDDCISLGDGS+QVTITN+TCGPGHGISVGSLGKY AE PV+G+I KNCTL+
Sbjct: 206 VTNTNISTGDDCISLGDGSRQVTITNITCGPGHGISVGSLGKYVAEAPVQGVIAKNCTLI 265

Query: 133 NTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNK 184
           NT+NGVRIK+WP+SP  GTASDMH+EDIIMVNVSNPI+IDQ+YCP+NQC+K
Sbjct: 266 NTTNGVRIKTWPSSPSFGTASDMHFEDIIMVNVSNPIIIDQKYCPWNQCDK 316

[Close]

BLAST of Lcy12g001870 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 236.1 bits (601), Expect = 2.7e-62
Identity = 104/177 (58.76%), Postives = 143/177 (80.79%), Query Frame = 0


Query: 12  TLKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGI 71
           +++  F+TN+ + DI+S D+KNFH+NV+G KN+TF +V I AP +S N+DGIH+GRS+G+
Sbjct: 141 SIRFDFVTNAEIRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVGV 200

Query: 72  NVINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTL 131
           ++IN+ I TGDDC+S+GDG   + + NV CGPGHGISVGSLG+Y  E+ V GI V NCTL
Sbjct: 201 SIINSRISTGDDCVSVGDGMVNLLVKNVVCGPGHGISVGSLGRYGHEQDVSGIRVINCTL 260

Query: 132 MNTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKKVLNS 189
             T NG+RIK+WP++  + TAS++H+E+II+ NVSNPILIDQEYCP+NQCNK+  +S
Sbjct: 261 QETDNGLRIKTWPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKSSS 317

[Close]

BLAST of Lcy12g001870 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 235.0 bits (598), Expect = 6.0e-62
Identity = 110/194 (56.70%), Postives = 146/194 (75.26%), Query Frame = 0


Query: 12  TLKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGI 71
           +++  FI NS + DI+S D+KNFH+NVLG KN+T  ++ I AP DS N+DGIH+GRS G+
Sbjct: 140 SIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGV 199

Query: 72  NVINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTL 131
            ++N+ I TGDDCIS+GDG K + +  VTCGPGHGISVGSLG+Y  E+ V GI V NCTL
Sbjct: 200 KILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTL 259

Query: 132 MNTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKKVLNSWIF 191
             T NG+RIK+WP++  + TASD+H+EDII+ +VSNPILIDQEYCP+NQCNK+  ++   
Sbjct: 260 QETDNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKAST--- 319

Query: 192 IFYFFIAFINVSIK 206
                I  +N+S K
Sbjct: 320 -----IKLVNISFK 325

[Close]

BLAST of Lcy12g001870 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 233.0 bits (593), Expect = 2.3e-61
Identity = 104/173 (60.12%), Postives = 138/173 (79.77%), Query Frame = 0


Query: 12  TLKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGI 71
           +++  F+ N+ + DI+S D+KNFH+NVLG KN+TF +V + AP +S N+DGIH+GRS G+
Sbjct: 141 SIRFDFVENAEIRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGV 200

Query: 72  NVINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTL 131
            ++N+ I TGDDCIS+GDG K + + NV CGPGHGISVGSLG+Y  E+ V GI V NCTL
Sbjct: 201 KILNSKIATGDDCISVGDGMKNLHVENVMCGPGHGISVGSLGRYVHEQDVTGITVVNCTL 260

Query: 132 MNTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKK 185
             T NG+RIK+WP++  A TAS +H+E+II+ NVSNPILIDQEYCP+NQCNK+
Sbjct: 261 QGTDNGLRIKTWPSAACATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQ 313

[Close]

BLAST of Lcy12g001870 vs. TAIR 10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 231.5 bits (589), Expect = 6.7e-61
Identity = 102/173 (58.96%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 12  TLKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGI 71
           +++  F+T++ +  ITS D+K+FH+NV+G KN+TF+ V I AP +S N+DGIH+GRS GI
Sbjct: 140 SIRFDFVTDAKIRGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGI 199

Query: 72  NVINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTL 131
            +IN+ I TGDDC+S+GDG K + +  VTCGPGHGIS+GSLG+Y+ EE V GI + NCTL
Sbjct: 200 KIINSFISTGDDCVSVGDGMKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIINCTL 259

Query: 132 MNTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKK 185
             T NG+RIK+WP++    TASD+H+E+I++ NVSNPILIDQEYCP+NQCNK+
Sbjct: 260 QETDNGLRIKTWPSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQ 312

[Close]

BLAST of Lcy12g001870 vs. TAIR 10
Match: AT3G07850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 216.5 bits (550), Expect = 2.2e-56
Identity = 97/173 (56.07%), Postives = 132/173 (76.30%), Query Frame = 0


Query: 13  LKLSFITNSIVSDITSKDSKNFHVNVLGCKNLTFQHVNINAPGDSINSDGIHIGRSLGIN 72
           ++ + +TNS ++ ITS +SK FH+N+L CKN+T   + I+AP +S+N+DGIHIGRS G+N
Sbjct: 192 IRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGVN 251

Query: 73  VINTNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGKYNAEEPVEGIIVKNCTLM 132
           +I   I TGDDC+S+GDG++ + + NV CGPGHGIS+GSLG+Y  E+PV+G+ V+ C + 
Sbjct: 252 LIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLIK 311

Query: 133 NTSNGVRIKSWPASPVAGTASDMHYEDIIMVNVSNPILIDQEYCPYNQCNKKV 186
           NT NGVRIK+WP SP  G AS++ +EDI M NVS P+LIDQEYCPY  C   V
Sbjct: 312 NTDNGVRIKTWPGSP-PGIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGV 363

The following BLAST results are available for this feature:

BLAST of Lcy12g001870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40312	2.0e-65	66.27	Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1	[more]
P24548	4.8e-64	66.48	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
Q39766	1.9e-60	59.65	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
Q39786	2.5e-60	59.65	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]
Q6H9K0	6.1e-59	58.72	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]

BLAST of Lcy12g001870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUC6	3.0e-85	87.28	exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111024096 PE=3 SV...	[more]
A0A5A7T7B3	1.2e-81	83.82	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CC08	1.2e-81	83.82	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103498752 PE=3 SV=1	[more]
A0A6J1DBN7	5.5e-79	69.72	exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111019009 PE=3 SV...	[more]
A0A0A0KSQ0	4.6e-78	78.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G646670 PE=3 SV=1	[more]

BLAST of Lcy12g001870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157387.1	6.2e-85	87.28	exopolygalacturonase-like [Momordica charantia] >XP_022159278.1 exopolygalacturo...	[more]
XP_008459709.2	2.4e-81	83.82	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
KAA0039364.1	2.4e-81	83.82	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK00547.1 exopolygalactur...	[more]
XP_022150984.1	1.1e-78	69.72	exopolygalacturonase-like [Momordica charantia]	[more]
XP_038889253.1	1.9e-78	83.04	exopolygalacturonase-like [Benincasa hispida]	[more]

BLAST of Lcy12g001870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07830.1	2.7e-62	58.76	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	6.0e-62	56.70	Pectin lyase-like superfamily protein	[more]
AT3G07840.1	2.3e-61	60.12	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	6.7e-61	58.96	Pectin lyase-like superfamily protein	[more]
AT3G07850.1	2.2e-56	56.07	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 91..111 e-value: 2000.0 score: 5.0 coord: 121..142 e-value: 2.2 score: 17.3 coord: 41..67 e-value: 67.0 score: 12.4
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 12..184 e-value: 3.6E-62 score: 210.3
IPR000743	Glycoside hydrolase, family 28	PROSITE	PS00502	POLYGALACTURONASE	coord: 98..111
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 8..207 e-value: 8.4E-60 score: 204.4
None	No IPR available	PANTHER	PTHR31375:SF132	OS06G0509600 PROTEIN	coord: 12..187
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 12..187
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 13..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g001870.1	Lcy12g001870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity