Lcy12g001510 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g001510
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RRM domain-containing protein
Location	Chr12: 2906667 .. 2912892 (+)
RNA-Seq Expression	Lcy12g001510
Synteny	Lcy12g001510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATATTCTAAATTTATGTTCCGTCGCCTTTCTCTCTATCTGTCGTTAGGTTTCTCCCTTACTTCCGACATGTCGATCAACGCTTCCTACAAATTAGCAATAGCGATGGTGAGCTTAACATTGGGAAAGGGAGCTCAATAGAGTGTTCTTCGCGACCTTCTTCATTCTCCTCTGAGTTTGGATTTTCGCAGTGGCCATGACGGTGGACGATGATAGCTCGATATACGTCGGCGGACTTCCTTACGACGCCACCGAGGATAGTCTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCCGTTAAGGTCAATTCCTCTCACTAACCTGATTTCTCCCTCCCCTTTCCCTCCTTCGATCTTGTCATAAGAATTATGCAGCTCTTTAGGTGTTTCTGAAGGAATAGTTGATTGTTTGGATATAAATATATATATATTTTTAAAAATCTACAAAGCTACTTAAAGTTCAGATGTTAGTTTGAACTTAATTGTCTAGCTCAATACTTTTTTTAAACGGAGTTTAGACATGGGTAGTAGCTATCTTAAAGAATGGAGCATGCCCTCTGAAGAATGTATCAATGGTTTGTACTTGGTTTGAATTACTGGACATGGTGGAAGATGCTGAATTCATGGTGAAGATTCTTAGCTATTGTGGAGAATTTGTGTTGTTGGTTTAGTTTTGTTTTACTTGAATGCTTCCACGACATTTGTTTGCTATGTATTGGTTTAAATGCTTTCAATTGCACTTGCGTTTGAATGGCTCTGTTGCATGTAATTTCCATATAGAATGTGATTGTAGTTTAATAATTTGATTTGTCACCAGATTATCAATGATCGTAGTACTAGGGGAAAGTGCTATGGGTTTGTTACTTTTACAAACCCTCGATCTGCTGTTGATGCCATCAAAGACATGGATGGAAGGGTATGTTCATTTTATAGCTGGAATACAAATCTTTAAGTGTTGGTTATTTATATATTTTCCATTATATTTTTGAGTCTTGACTTCTGACAGTGTAAGGCTTTGAATTAGACTATTGATGGGCGAGTTGTCAGAGTTAATGGAGTGAAGACTAGAGGTGGTGGAAGGTTTGGTAGATTCGATGTAGAGAGGGATGCAAGTTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATACCGTCATAGAGGTAGAAATAATGATTGGTCTAGAGACCGTGATCGATCTCGAGAACGTGATTTGGACAAGGAAAGAGTATATGAGCATCCACAAGATCGTGATCAACCTAAGGATAAATTATTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGGTACATGATTTGAACCACGATCAGGATTGGGAAAAAGATCGTGATGCAGATTGGAGTGGAGGCAGAGGCATTGATAACACTGATGATTATGATAAAAGCCTTGACAATGATAGAGATCCACTCTCAAGGAGAGATAACGGGTGAGTCTGTCTTTGAACTTGTTGACATCAATGTAAAGTCGTTTTAGCATAATTTGCTATTTGTCTGAGTTTGGTTAGTCATATAACTAATATTCACATCTGTGACATAATATTGAAAATTTTAGATTCTTGACAATTAATTGAGTTGGAATGCCTACTCAGTTGTGAAGCCAATGTTTCTAGATGTTTGATAGTTTATAATTGGGCAGTTAGTTAGTGATTCCCGAAATTTTCTAGAGATCTTTAAATTACTTTATTCTTTCATTTGTGGTAATATCCTTTCCCTCATATGCATACATTGAGTCTTATATTAAAGGCATTGGAGAGATGAGGAAGTCAATGACTAGATGGCAGTACAGGTTTTAAAAACAATGAAACTGCTGTTACAACTTCCATGGAGATGAATTAGATAGTAATTATTTAGAAAATTTTCCACGTAATTTTAGCTCATTTTAATGCTTATATAGTTTTGTGAAATTTTAAAACCACGTCTAGTTTTTCTTTTCTCCAAATGTACATACCATTTCCCCATTACTTTTAAGTTTTATGGTATAATCCTTTATTGTAAAGGAAGATGAAAAATTGCATATGTTCTTCCTCTTGATGTATTTTGGGATCAATAGCATCAACATCTTGCCGTGTCTTCCTTCCTGTTTCATAGAAAGGATAAGAAAGAGAAATAACCTTTTGGCCATGATTATATGATTGCTATTATGGCTTCTCTTTTCAGTCTTACAATTGATCCAGATCATGCAATGTCTTCCCTCCTGTTTCATAGAAAGGATGGATAAAGAGGAATAACTTTTTGGCCATGATTATACTATATGATTGCTATTATGGCTTCTCTTTTCAGTCTTGCAATTGGAGATCGAACTATTCGGGATCTTTCATCAGACTCTAGTGATGATTATATCCATGAAGTATGATTACCATTTTTCACCTTTTAGATTTTCTCTATTAATAGGTTACAACTGATTAATAAGCATCTAAGGCAATTTGTGCTCCTATTGTTTGCATTGTAGCTAAAGGAACAACTGGAGATATCAACTGAAAGATTTGAAGAACTTAGAAAAGAGGTCTGTTTCTACATATAGTTGACCAACAAGTGCGCTGATGATTATTTTTCTTAGCAGAAGAGAGAGTTGGTCATTTGGAAATGGTTGGCAAAATTTTCAGAAAGATTCCAAGTGGATTAGGCATAATATAATACCCTCGATCTGAAATGTGCTTCAGAACATAATATAATCTATAGGCCCACAAACAAATATGCAACCCATCCTCACAAAGAAACTTAACCAACGTATTAAATTCAGCTCCAGTTGATATGTTCCTTTGAATCTAATTATGGTTTGTGCAATGTTCTGTAACTTGTTTTGCATCATTCTTTTAGATATCATGATTGCACTTGAATTTAGAGCCTTAGAGGTTATCATTTTCAGATTTCTCAAATAGAGGAGAGGACTGGAGAGAAAGGAAAACTTGTGATTGATTTGCAAAAGAAAGCCAAGGTATAAGATAATTTTATGACTTTTAACCGTGACACTTTTGTTGTGTTCTCATTGTTGTCCTGTCCCTCGTGCTTTATAACTAATATCTAGTTTATGTCCAACTAACTAATGTTGGATGCAGAAACTGGAAGATGCATTGATCAGCGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGCTGACCAAGGTAACTGCCCGTTTGATATATTACATTCTTTAGAAACTATAATGACAATGATAATTCTGGTTTTGTTATGCAAATAACTGCAGCTCCATAAAAGCTTTCTGCTAGTGAAGGACTATTCTGAGAAACTTAAAACCAGTGAACAAGAACTTCAGGTTTGTGTTTCAACATTAAAACACTTTAGATTCTCTTCTCTTCTCTCTCTCCAAGGAAAAAAAAAGAACGAACACCTAATTTAATAGAAACAATGTACTCGTGGATACAATTGTTGGACAGGACTTTATTAGAACAATTGTGCTATGTATCAATATTGTAGGGAATCTTACATATGACATACATATGTTATTGTAATGCCCCAAGTTTTTATTATTTACTAACCTAGTGACATTAACTCTTATGACAAAACTAACCGAGTGCTATGAAAATTTCGACAACATAACGACATACACAGAACTAAACCAAACTTTTATTTAACTTGTTAAACAAGGGAAACACACTTCAAATGATAAACCACCCAACTACAAACTTCCACAAGATCGCACGTCAACATAACAGACTTCAAACTACCACCAAAACAAGCGAGCTAGATCTTGCACCATCACAACCTAAATCTAAACAAGCATGAAGGGACAATTCAACTAGACAACTTTAATAGCCAAAACTTTATTAAACCTTCCACAACGGAAAACAAGAAAAAGATTACTAACTCAATACTCAAAGGCAATTACAAGAGATTCAATAACCTAAATCAACCTAATCAAACTTTATTAAACCTTCCACAATGGAAAACAAGAAAAAGATTACTAACACATCTCAACACGTGATTTCCGCATCACGCTTCGCAAACTCTTCAAGACTGACCCTTTGAGTTACACCGAGCCTTGACCATTTATACCCAGGGCCTCGATACTTCTCTACGGAGCTCGACGTTCGACCCTTGACCATTTATACCCAAGACCTCGAACTGTACATCAACCCTTAACCATTTACACTCAAGGCCTCGATGACTAAGTAACGTATTGACCCTTGACCTTTTATACCCAAGGCCTCAATACTTGCCTCAAGACTCATCACATCGACCCTTGACCATTTATACCCAACGCCTTGATGCTCCTCTTTATCTAACATTGGCATGTCAACCCCCGACCATTTATACCAGAGACCTCGACATCCAATAGTGATATATCAGCCCTCGACCATTTATACCCGAGGCACTGATAATCACTTTACTTTCCTCGAAACAATATCAACCCTCGACCATTTATACCCAGGCCCTAATATTTAACTCACACCTTTTATCACAATGCTAGTCCTCAACCATTTATACTCGAGACCCTAGCACCCTCCTGTACTCAACTCAAGGTCCTCTGATCTCTTTTCACTAAGCAAGCTCACAACCCAGATGTATTAACATTTCAGATGACCATAATGTTATAGCAATATTGCAACCATACTTTCCATGACTCATCCAACTAAGCATACACGATCATGAAACACGTAATTCTATCACCACATAGGAATTCAACATGCTCATTACCATGCAATTCCACAACAAGCATCCAAGCATGCTCAACTAATTCAAAGTATATACAATTCATAAAAGAGTCATAATATAACATAAAAGATAAAACATGCAACATGCATCACACAATCAAACAGACTCAACAGGTAGAAACTACTTACCTATAACGCTTACTAGAATAATCTAGGAGCTCCTAAAGAACTTGAAAAGCTCCTAACGTTGAGCTTGAAAGCTAGATCAACACTTGGAACCAACTTGAAGCCTTCTAAGATCCACCAATCAGAATAAGCTTTTTGTTGGAATTAACTCGAATAAGCTCTAGTTGACCTCAAGTGAACTATGCTAATGGGATGAGATGCTTGCTGGAATTGGTCGACCAGCACTAAAGCTCTTTGAATATGCATTGCCCGGAATCCGAATTGGGTCGAAACTGAAAATTAAACAACACCCAAGGGTCATAGACTTTTCTTAGGCCAATCTAATTGAGTTGCAAAGGTCTAAGGCGCTGGAACTTACCAAAATATACCCATGGATGTCGAACGCTTGCTGGAAGGTGATTTTATAGGCCCGAAAACATTGATACCAACTCCCACGCTTATGTGTAATTCGATTCGAGGCCTTTCGACTTATGGGCAAACGCTAAAATCTAGATTCAAGCCTAAAAGCTCGCTGATTAGGGGCCGAATATGCTTGAACTTGCCAATTCGGAATCGATAAAGACAGGTTAAATAAAATTTTGGTTTAGTTTTGTTTTGTGTATGCCATTATGTTGCCGAAATTTTTGGAACACTCGGTTAGTTTTGTCATAAGAGTTGGTAATGTTGTTAGGTTAGTAGATAATAAAAACCTGGGGCGTTACAGTTATGATCATAAATTGAGGAAATATATTTTTATCTATATCAATTACAGAGATTTATCATATATTTATTTGTGTCACGTAAACATTTTTAGATTTCCCTTCTTTCTAATGCCTTACATTTGACCGTCTCTGTATCCAATAACTCTTCTCCAAAGATGCTTGCAATTCATCCTTTTGACATTGCACATGAATGAATATAAAACATCATATTACCATTTGCTTACAGGCTCTGGTAGAATCAACTGCAATAGAGAGTGACGTTGGCTGAAGCATGAAGTTCAAGCCATTTGCAATTCATTTCATAACCTGAAACTGCATCCTGCTATTTTGTTGGCATGCAACTCTTCCCTGTGGTCATGGTATTCCCGGTCTTCTGTTGATACTGATGACAAGTTGTGGTGTGGAATTCACTTGTAATTTCTCCCAAGACTAAGCTGCCCATTTATTTCATGGTAGTTCACAATCAACTAAGCACATGATTTTACTCGCTGGTAGCATCTTCAGAGGTATTTAAAGAACTATTAAAAATTAATTCTAACATCCAAGTAGTTTTCCATCTTGTCTGAAGTTCCTTCCCATGAATTTGTACAAAAATTGTAAAATTTAGGTTGTAACCCTTTTCTGAGAATGTTTTGACATATTTCAAATCGAATTCTGGGTTGGCATAATTAAATTTTGT

mRNA sequence

GCATATTCTAAATTTATGTTCCGTCGCCTTTCTCTCTATCTGTCGTTAGGTTTCTCCCTTACTTCCGACATGTCGATCAACGCTTCCTACAAATTAGCAATAGCGATGGTGAGCTTAACATTGGGAAAGGGAGCTCAATAGAGTGTTCTTCGCGACCTTCTTCATTCTCCTCTGAGTTTGGATTTTCGCAGTGGCCATGACGGTGGACGATGATAGCTCGATATACGTCGGCGGACTTCCTTACGACGCCACCGAGGATAGTCTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCCGTTAAGATTATCAATGATCGTAGTACTAGGGGAAAGTGCTATGGGTTTGTTACTTTTACAAACCCTCGATCTGCTGTTGATGCCATCAAAGACATGGATGGAAGGACTATTGATGGGCGAGTTGTCAGAGTTAATGGAGTGAAGACTAGAGGTGGTGGAAGGTTTGGTAGATTCGATGTAGAGAGGGATGCAAGTTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATACCGTCATAGAGGTAGAAATAATGATTGGTCTAGAGACCGTGATCGATCTCGAGAACGTGATTTGGACAAGGAAAGAGTATATGAGCATCCACAAGATCGTGATCAACCTAAGGATAAATTATTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGGTACATGATTTGAACCACGATCAGGATTGGGAAAAAGATCGTGATGCAGATTGGAGTGGAGGCAGAGGCATTGATAACACTGATGATTATGATAAAAGCCTTGACAATGATAGAGATCCACTCTCAAGGAGAGATAACGGTCTTGCAATTGGAGATCGAACTATTCGGGATCTTTCATCAGACTCTAGTGATGATTATATCCATGAACTAAAGGAACAACTGGAGATATCAACTGAAAGATTTGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGACTGGAGAGAAAGGAAAACTTGTGATTGATTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGCGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGCTGACCAAGCTCCATAAAAGCTTTCTGCTAGTGAAGGACTATTCTGAGAAACTTAAAACCAGTGAACAAGAACTTCAGGCTCTGGTAGAATCAACTGCAATAGAGAGTGACGTTGGCTGAAGCATGAAGTTCAAGCCATTTGCAATTCATTTCATAACCTGAAACTGCATCCTGCTATTTTGTTGGCATGCAACTCTTCCCTGTGGTCATGGTATTCCCGGTCTTCTGTTGATACTGATGACAAGTTGTGGTGTGGAATTCACTTGTAATTTCTCCCAAGACTAAGCTGCCCATTTATTTCATGGTAGTTCACAATCAACTAAGCACATGATTTTACTCGCTGGTAGCATCTTCAGAGGTATTTAAAGAACTATTAAAAATTAATTCTAACATCCAAGTAGTTTTCCATCTTGTCTGAAGTTCCTTCCCATGAATTTGTACAAAAATTGTAAAATTTAGGTTGTAACCCTTTTCTGAGAATGTTTTGACATATTTCAAATCGAATTCTGGGTTGGCATAATTAAATTTTGT

Coding sequence (CDS)

ATGACGGTGGACGATGATAGCTCGATATACGTCGGCGGACTTCCTTACGACGCCACCGAGGATAGTCTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCCGTTAAGATTATCAATGATCGTAGTACTAGGGGAAAGTGCTATGGGTTTGTTACTTTTACAAACCCTCGATCTGCTGTTGATGCCATCAAAGACATGGATGGAAGGACTATTGATGGGCGAGTTGTCAGAGTTAATGGAGTGAAGACTAGAGGTGGTGGAAGGTTTGGTAGATTCGATGTAGAGAGGGATGCAAGTTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATACCGTCATAGAGGTAGAAATAATGATTGGTCTAGAGACCGTGATCGATCTCGAGAACGTGATTTGGACAAGGAAAGAGTATATGAGCATCCACAAGATCGTGATCAACCTAAGGATAAATTATTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGGTACATGATTTGAACCACGATCAGGATTGGGAAAAAGATCGTGATGCAGATTGGAGTGGAGGCAGAGGCATTGATAACACTGATGATTATGATAAAAGCCTTGACAATGATAGAGATCCACTCTCAAGGAGAGATAACGGTCTTGCAATTGGAGATCGAACTATTCGGGATCTTTCATCAGACTCTAGTGATGATTATATCCATGAACTAAAGGAACAACTGGAGATATCAACTGAAAGATTTGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGACTGGAGAGAAAGGAAAACTTGTGATTGATTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGCGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGCTGACCAAGCTCCATAAAAGCTTTCTGCTAGTGAAGGACTATTCTGAGAAACTTAAAACCAGTGAACAAGAACTTCAGGCTCTGGTAGAATCAACTGCAATAGAGAGTGACGTTGGCTGA

Protein sequence

MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAVDAIKDMDGRTIDGRVVRVNGVKTRGGGRFGRFDVERDASWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSKDNEKVHDLNHDQDWEKDRDADWSGGRGIDNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVIDLQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSEKLKTSEQELQALVESTAIESDVG

Homology

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BLAST of Lcy12g001510 vs. ExPASy Swiss-Prot
Match: Q18409 (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=6239 GN=rsp-6 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-13
Identity = 64/170 (37.65%), Postives = 84/170 (49.41%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAVDAIK 65
           D+ +YVGGLP DAT   L  IFD +G +  V +    + R   + FV + + R A DA++
Sbjct: 2   DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWV----ARRPPGFAFVEYDDVRDAEDAVR 61

Query: 66  DMDGRTIDG---RVVRVNGVKTRGGGRFGRFD-------------VERDASWERDRDRGR 125
            +DG  I G   RV    G +  GGGR G F               +R  S  R RDRGR
Sbjct: 62  ALDGSRICGVRARVELSTGQRRGGGGRGGGFGGRGGGGRDRSPYRGDRGRSRSRSRDRGR 121

Query: 126 DYDHDRYRHRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKDKLLDR 160
           D   DR R R R+    R R+RSRER+  + R    PQ+RD+   K   R
Sbjct: 122 DRSRDRSRDRSRDRSRDRSRERSRERERTRSR-SRSPQERDRSHSKSRSR 166

[Close]

BLAST of Lcy12g001510 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-09
Identity = 76/230 (33.04%), Postives = 108/230 (46.96%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAVDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIDGRVVRVNGVKTRGGGRFGRFDVERDASWERDRDRGRDYDHDRYRHRGRNND 125
           K M GR +  +V+ VN  + + GG     DV++         RG+  + + ++ R R   
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGE----DVDQLKKGGGYSSRGKGTEDECFKCR-RPGH 130

Query: 126 WSRD---RDRSRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSKDNEKVHDLNHDQD 185
           W+RD       RER      +     D D  +D+  DRD E E+     E+  + +   D
Sbjct: 131 WARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLERER-----EREREFDRYMD 190

Query: 186 WEKDRDADWSGGRGI--DNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRD 230
             +DRD    GGR    D  D  DK    D  P  R       GDR + D
Sbjct: 191 GRRDRD----GGRYSYRDRFDSGDKYEPRDHYPFERY---APPGDRFVSD 223

[Close]

BLAST of Lcy12g001510 vs. ExPASy Swiss-Prot
Match: Q66II8 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.7e-09
Identity = 90/332 (27.11%), Postives = 146/332 (43.98%), Query Frame = 0


Query: 4   DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKII-NDRSTRGKCYGFVTFTNPRSAVD 63
           D   +++V  + YD TE  LRR F++YG +  + ++ N RS + + Y F+ + + R    
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHS 159

Query: 64  AIKDMDGRTIDGRVVRVNGVKTR--------------GGGRFGRFDV------------- 123
           A K  DG+ IDGR V V+  + R              GG R G  DV             
Sbjct: 160 AYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRY 219

Query: 124 -ERDASWERDRD---RGRDYDHDRYRHRGRNNDWSR--------DRDRSRERDLDKERVY 183
            ERD   ER+RD   R R+ D +R R R R+ +  R        +R RSRER  DK++  
Sbjct: 220 DERDRDRERERDRRERSRERDKERERRRSRSRERRRRSRSREKEERKRSRERSRDKDK-- 279

Query: 184 EHPQDRDQPKDKLLDRDPELEKTSKDNEKVHDLNHDQDWEKDR-------------DADW 243
              +D+D+ K+K  D+D + ++ S+  E+  + + D++ ++DR             D   
Sbjct: 280 --DKDKDKDKEKDKDKDRDRKRRSRSRERKRERDRDREKKEDRVEGEVPESVDVPQDDAQ 339

Query: 244 SGGRGIDNTD----------DYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDSSDDYIH 273
           +G  GID  +          D D+  D ++D    RD      DR  R    D   D   
Sbjct: 340 TGDLGIDGIELKQEPEEKNRDRDRERDREKDRDKDRDR-----DRDRRRSHRDRERDKDR 399

[Close]

BLAST of Lcy12g001510 vs. ExPASy Swiss-Prot
Match: Q54HS3 (Histone-lysine N-methyltransferase set1 OS=Dictyostelium discoideum OX=44689 GN=set1 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-06
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 115 RYRHRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSKDNEKVH 174
           +Y +R R  DW RDRDR  ERD D ER  +  +DRD+ +D   DRD E     +D +   
Sbjct: 451 QYDYRDRPRDWERDRDRDWERDRDWERDRDRERDRDRDRDWERDRDWE-----RDRDWER 510

Query: 175 DLNHDQDWEKDRDADWSGGRGIDNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDS 234
           D + D+DWE+DRD DW      D   D+++  + DRD   R+ N       T    S+ S
Sbjct: 511 DRDRDRDWERDRDRDWER----DRDRDWERDRERDRDRYDRQTNFSPAPQSTTTSASTSS 562

Query: 235 S 236
           +
Sbjct: 571 T 562

[Close]

BLAST of Lcy12g001510 vs. ExPASy Swiss-Prot
Match: P09406 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis OX=8355 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 3.5e-05
Identity = 87/348 (25.00%), Postives = 158/348 (45.40%), Query Frame = 0


Query: 4   DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRG----KCYGFVTFTNPRS 63
           D   +++V  + YD TE  LRR F++YG +  + I+ ++ + G    + Y F+ + + R 
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERD 159

Query: 64  AVDAIKDMDGRTIDGRVVRVNGVKTR--------------GGGRFGRFDV---------- 123
              A K  DG+ IDGR V V+  + R              GG R G  DV          
Sbjct: 160 MHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDT 219

Query: 124 ----ERDASWERD-RDRGRDYDHD-RYRHRGRNNDWSRDRDRSRERDLDKERVYEHPQDR 183
               ERD   ERD R+R R+ + + R R R R+ +  R + RSRE++ +++R  E  +D+
Sbjct: 220 SRYDERDRERERDRRERSREREKEPRERRRSRSRE-RRRKSRSREKE-ERKRTREKSKDK 279

Query: 184 DQPKDKLLDRDPELEKTSKDNEKVHDLNHDQDWEKDR-------------DADWSGGRGI 243
           D+ KDK  ++D + ++ S+  E+  + + D++ +++R             D    G  GI
Sbjct: 280 DKEKDK-DNKDRDRKRRSRSRERKRERDRDREKKEERVEAEVPEADDAPQDDAQIGDLGI 339

Query: 244 D----NTDDYDKSLDNDRDPLSRRDNGLAIGD----------RTIRDLSSDSSDDYIHEL 285
           D      +  +KS + DR+    R+ G    D          R+ RD   +   D   + 
Sbjct: 340 DGIELKQEPEEKSRERDRERDRDREKGEKDRDKDRDRDRDRRRSHRDRDREKDRDRDRDR 399

[Close]

BLAST of Lcy12g001510 vs. ExPASy TrEMBL
Match: A0A6J1CQ67 (U1 small nuclear ribonucleoprotein 70 kDa OS=Momordica charantia OX=3673 GN=LOC111013144 PE=4 SV=1)

HSP 1 Score: 576.6 bits (1485), Expect = 6.7e-161
Identity = 309/343 (90.09%), Postives = 322/343 (93.88%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIDGRVVRVNGVKTRGGGRFGRFDV---ERDASWERDRDRGRDYDHDRYR 120
           VDAIKDMDGRTIDGRVVRVNGVK+RGGGRFGR  +   ERDA WE+DRDRGRDYDHDRY 
Sbjct: 61  VDAIKDMDGRTIDGRVVRVNGVKSRGGGRFGREGIRYNERDADWEKDRDRGRDYDHDRYH 120

Query: 121 HRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSKDNEKVHDLN 180
           HRGRNNDWSR+RDRSRE DLDKER YEHPQDRD PKDKLLDRDPELEKTSKDNE V DLN
Sbjct: 121 HRGRNNDWSRERDRSREHDLDKERGYEHPQDRDLPKDKLLDRDPELEKTSKDNELVLDLN 180

Query: 181 HDQDWEKDRDADWSGGRGIDNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDSSDD 240
            DQDWEKD DADWSGGR IDNTDDYDKSLDNDRD  SRRD+GL I  RT R++SSDSSDD
Sbjct: 181 RDQDWEKDHDADWSGGRNIDNTDDYDKSLDNDRDLPSRRDSGLTIEGRTGREVSSDSSDD 240

Query: 241 YIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVIDLQKKAKKLEDALISAKKRSSF 300
           YIHELKEQLEISTERFEELRKEIS+IEERTGEKGKLV++LQKKAKKLEDALISAKKR+SF
Sbjct: 241 YIHELKEQLEISTERFEELRKEISRIEERTGEKGKLVVELQKKAKKLEDALISAKKRTSF 300

Query: 301 RQMQLTKLHKSFLLVKDYSEKLKTSEQELQALVESTAIESDVG 341
           RQMQLTKLHKSFLLVKDYSE+LK+SEQELQALVESTAIESDVG
Sbjct: 301 RQMQLTKLHKSFLLVKDYSERLKSSEQELQALVESTAIESDVG 343

[Close]

BLAST of Lcy12g001510 vs. ExPASy TrEMBL
Match: A0A6J1G3E0 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC111450445 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 5.9e-157
Identity = 305/346 (88.15%), Postives = 319/346 (92.20%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIDGRVVRVNGVKTRGGGRFG----RFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTI+GRVVRVNGV TRGGGRFG    RFDVERD +WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSKDNEKVHD- 180
           R RGRNNDWSR+RDRSRE DLDKERVYEH QDRD PKD LLDR+PELEK  K NE+  D 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDWEKDRDADWSGGRGIDNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDS 240
            L+H QDWEKD DADW+GG GIDNTDDYDKSL +DRD LSRRDNGLAI  RT R+LSSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVIDLQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLV++LQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSEKLKTSEQELQALVESTAIESDVG 341
           SSFRQMQLTKLHKSFLLVKDYSE+LK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Lcy12g001510 vs. ExPASy TrEMBL
Match: A0A6J1KCE4 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita maxima OX=3661 GN=LOC111493652 PE=4 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 1.7e-156
Identity = 304/346 (87.86%), Postives = 318/346 (91.91%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIDGRVVRVNGVKTRGGGRFG----RFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTI+GRVVRVNGV TRGGGRFG    RFDVERD +WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSKDNEKVHD- 180
           R RGRNNDWSR+RDRSRE DLDKERVYEH QDRD PKD LLDR+PELEK  K NE+  D 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDWEKDRDADWSGGRGIDNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDS 240
            L+H QDWEKD D DW+GG GIDNTDDYDKSL +DRD LSRRDNGLAI  RT R+LSSDS
Sbjct: 181 KLSHGQDWEKDHDGDWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVIDLQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLV++LQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSEKLKTSEQELQALVESTAIESDVG 341
           SSFRQMQLTKLHKSFLLVKDYSE+LK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Lcy12g001510 vs. ExPASy TrEMBL
Match: A0A5D3CHM1 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00030 PE=4 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 1.1e-155
Identity = 302/346 (87.28%), Postives = 316/346 (91.33%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIDGRVVRVNGVKTRGGGRFG----RFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTI+GRVVRVNGVK+R GGRFG    RFD ERD +WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSKDNEKVHD- 180
           RHRGRNNDWSRD DRSRE DLDKER Y+H QDRD PKD+ LDRDPELEKTSKDNEK+HD 
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 -LNHDQDWEKDRDADWSGGRGIDNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDS 240
            LNHDQDWEKD  AD SGG GID TDDYDKSLDNDRD + RRDNGL I  RT RDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVIDLQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLV++LQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSEKLKTSEQELQALVESTAIESDVG 341
           SSFRQ QL KLHKSFLLVKDYS++LKTSEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Lcy12g001510 vs. ExPASy TrEMBL
Match: A0A5A7V7D5 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001420 PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 1.2e-154
Identity = 300/346 (86.71%), Postives = 315/346 (91.04%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIDGRVVRVNGVKTRGGGRFG----RFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTI+GRVVRVNGVK+R GGRFG    RFD ERD +WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSKDNEKVHD- 180
           RHRGRNNDWSRD DRSRE DLDKER Y+H QDRD PKD+ LDRDPELEKTSKDNEK+HD 
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 -LNHDQDWEKDRDADWSGGRGIDNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDS 240
            LNHDQDWEKD  AD SGG GID TDDYDKSLDNDRD + RRDN L I  RT RDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVIDLQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLV++LQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSEKLKTSEQELQALVESTAIESDVG 341
           SSFRQ QL KLHKSFLLVKDYS++LKTSEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Lcy12g001510 vs. NCBI nr
Match: XP_022143227.1 (U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia])

HSP 1 Score: 576.6 bits (1485), Expect = 1.4e-160
Identity = 309/343 (90.09%), Postives = 322/343 (93.88%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIDGRVVRVNGVKTRGGGRFGRFDV---ERDASWERDRDRGRDYDHDRYR 120
           VDAIKDMDGRTIDGRVVRVNGVK+RGGGRFGR  +   ERDA WE+DRDRGRDYDHDRY 
Sbjct: 61  VDAIKDMDGRTIDGRVVRVNGVKSRGGGRFGREGIRYNERDADWEKDRDRGRDYDHDRYH 120

Query: 121 HRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSKDNEKVHDLN 180
           HRGRNNDWSR+RDRSRE DLDKER YEHPQDRD PKDKLLDRDPELEKTSKDNE V DLN
Sbjct: 121 HRGRNNDWSRERDRSREHDLDKERGYEHPQDRDLPKDKLLDRDPELEKTSKDNELVLDLN 180

Query: 181 HDQDWEKDRDADWSGGRGIDNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDSSDD 240
            DQDWEKD DADWSGGR IDNTDDYDKSLDNDRD  SRRD+GL I  RT R++SSDSSDD
Sbjct: 181 RDQDWEKDHDADWSGGRNIDNTDDYDKSLDNDRDLPSRRDSGLTIEGRTGREVSSDSSDD 240

Query: 241 YIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVIDLQKKAKKLEDALISAKKRSSF 300
           YIHELKEQLEISTERFEELRKEIS+IEERTGEKGKLV++LQKKAKKLEDALISAKKR+SF
Sbjct: 241 YIHELKEQLEISTERFEELRKEISRIEERTGEKGKLVVELQKKAKKLEDALISAKKRTSF 300

Query: 301 RQMQLTKLHKSFLLVKDYSEKLKTSEQELQALVESTAIESDVG 341
           RQMQLTKLHKSFLLVKDYSE+LK+SEQELQALVESTAIESDVG
Sbjct: 301 RQMQLTKLHKSFLLVKDYSERLKSSEQELQALVESTAIESDVG 343

[Close]

BLAST of Lcy12g001510 vs. NCBI nr
Match: XP_038889756.1 (serine/threonine-protein kinase prpf4B [Benincasa hispida])

HSP 1 Score: 566.6 bits (1459), Expect = 1.4e-157
Identity = 307/346 (88.73%), Postives = 319/346 (92.20%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIDGRVVRVNGVKTRGGGRFG----RFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGR+I+GRVVRVNGVK+R GGRFG    RFDVERD SWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRSIEGRVVRVNGVKSRSGGRFGREGNRFDVERDVSWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSKDNEKVHD- 180
           RHRGRNNDWSRDRDRSRE DLDKER YEH QD D PKDKLLDRDPELEK+SKDNEKVHD 
Sbjct: 121 RHRGRNNDWSRDRDRSREHDLDKERGYEHSQDHDPPKDKLLDRDPELEKSSKDNEKVHDL 180

Query: 181 -LNHDQDWEKDRDADWSGGRGIDNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDS 240
            LNHDQD EK+  ADW GG GIDN DDY+KSLDNDR+ LSRRDNGL    RT RDLSSDS
Sbjct: 181 KLNHDQDSEKNHGADWIGGGGIDNADDYEKSLDNDRNQLSRRDNGLTSEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVIDLQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVI+LQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVIELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSEKLKTSEQELQALVESTAIESDVG 341
           SSFRQMQLTKLHKSFLLVKDYSE+LKTSEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Lcy12g001510 vs. NCBI nr
Match: XP_022946346.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita moschata] >KAG6599420.1 Cold-inducible RNA-binding protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030410.1 Cold-inducible RNA-binding protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 563.5 bits (1451), Expect = 1.2e-156
Identity = 305/346 (88.15%), Postives = 319/346 (92.20%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIDGRVVRVNGVKTRGGGRFG----RFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTI+GRVVRVNGV TRGGGRFG    RFDVERD +WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSKDNEKVHD- 180
           R RGRNNDWSR+RDRSRE DLDKERVYEH QDRD PKD LLDR+PELEK  K NE+  D 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDWEKDRDADWSGGRGIDNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDS 240
            L+H QDWEKD DADW+GG GIDNTDDYDKSL +DRD LSRRDNGLAI  RT R+LSSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVIDLQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLV++LQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSEKLKTSEQELQALVESTAIESDVG 341
           SSFRQMQLTKLHKSFLLVKDYSE+LK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Lcy12g001510 vs. NCBI nr
Match: XP_023547216.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo])

HSP 1 Score: 562.0 bits (1447), Expect = 3.5e-156
Identity = 304/346 (87.86%), Postives = 318/346 (91.91%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIDGRVVRVNGVKTRGGGRFG----RFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTI+GRVVRVNGV TRGGGRFG    RFDVERD +WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSKDNEKVHD- 180
           R RGRNNDWSR+RDRSRE DLDKER YEH QDRD PKD LLDR+PELEK  K NE+  D 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDWEKDRDADWSGGRGIDNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDS 240
            L+H QDWEKD DADW+GG GIDNTDDYDKSL +DRD LSRRDNGLAI  RT R+LSSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVIDLQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLV++LQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSEKLKTSEQELQALVESTAIESDVG 341
           SSFRQMQLTKLHKSFLLVKDYSE+LK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Lcy12g001510 vs. NCBI nr
Match: XP_022999196.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita maxima])

HSP 1 Score: 562.0 bits (1447), Expect = 3.5e-156
Identity = 304/346 (87.86%), Postives = 318/346 (91.91%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIDGRVVRVNGVKTRGGGRFG----RFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTI+GRVVRVNGV TRGGGRFG    RFDVERD +WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSKDNEKVHD- 180
           R RGRNNDWSR+RDRSRE DLDKERVYEH QDRD PKD LLDR+PELEK  K NE+  D 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDWEKDRDADWSGGRGIDNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDS 240
            L+H QDWEKD D DW+GG GIDNTDDYDKSL +DRD LSRRDNGLAI  RT R+LSSDS
Sbjct: 181 KLSHGQDWEKDHDGDWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVIDLQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLV++LQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSEKLKTSEQELQALVESTAIESDVG 341
           SSFRQMQLTKLHKSFLLVKDYSE+LK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Lcy12g001510 vs. TAIR 10
Match: AT5G19960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 219.5 bits (558), Expect = 4.0e-57
Identity = 156/344 (45.35%), Postives = 210/344 (61.05%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MT+DD +S+YVGGLPYD TE+++RR+F +YG+V+ VKI+NDRS RGKCYGFVTF+N RSA
Sbjct: 1   MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60

Query: 61  VDAIKDMDGRTIDGRVVRVNGVKTRGGG-RFGRFDVERDASWERDRDRGRD--YDHDRYR 120
            DAI+DMDG++I GR VRVN V TRGG    G   ++    W+R  DR  D  Y+ DRY 
Sbjct: 61  DDAIEDMDGKSIGGRAVRVNDVTTRGGRMNPGPGRLQPHGGWDRSPDRRSDGNYERDRYS 120

Query: 121 HRGRNNDWSRDRDRSRERDLDKERVYEHPQDRDQPKD-KLLDRDPELEKTSKDNEKVHDL 180
            R R  D S+DR R   R ++KER YEH  D ++  D  ++DR+   E+    +E     
Sbjct: 121 DRSRERDRSQDR-RKDHRYIEKERAYEHSHDFERRNDHDMVDRNGYKERVFDGDE----- 180

Query: 181 NHDQDWEKDRDADWSGGRGIDNTDDYDKSLDNDRDPLSRRDNGLAIGDRTIRDLSSDSSD 240
               DW  DR +    GRGI+ T     S    R   ++R++   +     RD  S+SS 
Sbjct: 181 ---GDWRGDR-SYVDNGRGINGT-----SAHEGRSQETKREDSTILDGGRGRDHFSNSSG 240

Query: 241 DYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVIDLQKKAKKLEDALISAKKRSS 300
           D  H++KE LE   +  E LR E+  +EER   K  +  +LQKK+K+LED LI+ KK  S
Sbjct: 241 D--HQVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSELQKKSKRLEDLLINEKKLVS 300

Query: 301 FRQMQLTKLHKSFLLVKDYSEKLKTSEQELQALVESTAIESDVG 341
            R+ +L KLHKS+  V++ ++ LK  EQELQ LV S A E   G
Sbjct: 301 QRRKELAKLHKSYSRVRECTDNLKDCEQELQLLVNSAAREGVAG 327

[Close]

BLAST of Lcy12g001510 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-15
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 7   SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAVDAIK 66
           S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query: 67  DMDGRTIDGRVVRVNGVKTR-GGGRFG 92
            +DGR + GRVV+VN    R  GG FG
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSGGGFG 126

[Close]

BLAST of Lcy12g001510 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-14
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 10 YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAVDAIKDMD 69
          +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+
Sbjct: 9  FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 70 GRTIDGRVVRVNGVKTRGGGRFG 92
          G+ +DGRV+ VN  ++RG G  G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGG 91

[Close]

BLAST of Lcy12g001510 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-14
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 10 YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAVDAIKDMD 69
          +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+
Sbjct: 9  FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 70 GRTIDGRVVRVNGVKTRGGGRFG 92
          G+ +DGRV+ VN  ++RG G  G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGG 91

[Close]

BLAST of Lcy12g001510 vs. TAIR 10
Match: AT4G39260.3 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-14
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 10 YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAVDAIKDMD 69
          +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+
Sbjct: 9  FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 70 GRTIDGRVVRVNGVKTRGGGRFG 92
          G+ +DGRV+ VN  ++RG G  G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGG 91

The following BLAST results are available for this feature:

BLAST of Lcy12g001510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q18409	3.4e-13	37.65	Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=62...	[more]
O22703	3.9e-09	33.04	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q66II8	6.7e-09	27.11	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp...	[more]
Q54HS3	1.4e-06	37.19	Histone-lysine N-methyltransferase set1 OS=Dictyostelium discoideum OX=44689 GN=...	[more]
P09406	3.5e-05	25.00	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis OX=8355 GN=snrnp70 P...	[more]

BLAST of Lcy12g001510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ67	6.7e-161	90.09	U1 small nuclear ribonucleoprotein 70 kDa OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1G3E0	5.9e-157	88.15	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1KCE4	1.7e-156	87.86	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A5D3CHM1	1.1e-155	87.28	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7V7D5	1.2e-154	86.71	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lcy12g001510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143227.1	1.4e-160	90.09	U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia]	[more]
XP_038889756.1	1.4e-157	88.73	serine/threonine-protein kinase prpf4B [Benincasa hispida]	[more]
XP_022946346.1	1.2e-156	88.15	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita moschata] >KAG6599420.1 Col...	[more]
XP_023547216.1	3.5e-156	87.86	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]	[more]
XP_022999196.1	3.5e-156	87.86	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita maxima]	[more]

BLAST of Lcy12g001510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19960.1	4.0e-57	45.35	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	3.8e-15	48.28	glycine-rich RNA-binding protein 3	[more]
AT4G39260.1	7.1e-14	44.58	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	7.1e-14	44.58	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.3	7.1e-14	44.58	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 239..266
None	No IPR available	COILS	Coil	Coil	coord: 312..332
None	No IPR available	COILS	Coil	Coil	coord: 274..294
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..219
None	No IPR available	PANTHER	PTHR15241:SF326	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA ISOFORM X1	coord: 1..334
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..334
None	No IPR available	CDD	cd00590	RRM_SF	coord: 9..80 e-value: 2.95428E-23 score: 89.6717
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..80 e-value: 5.9E-24 score: 95.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 e-value: 6.7E-21 score: 73.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..84 score: 19.604216
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..140 e-value: 8.5E-26 score: 92.7
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g001510.1	Lcy12g001510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding