Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGGATATGGAACCAAGAGCAAACTATCATTAGAAATGTGGGTTTTAATATGTTTCTCTGCAAATTCAAGAATGGGCGGATCAAAAAGTTTATCATGGAATCTGGACCATGGTTCTTTGATAAGGCACTTATTCTCATGAAGGAACCAAAAGGAGGGAATTTTGGGGACGACATCGACTTCAGGTTTGCTTCTTTTTGGATTCATTTTCATAAATTACCATTTGCTTGTTTTTCCAGGAAGGTGGCAGCGGAAATTGGGAGTCTCCTAGGCAAAGTGGAACAAGTGGATATTGAAGAGGAGATTGATCAAAGTTGGGGAGGCTCTCTACGGGTGAAGATCCAAATTGATGTGACCAAACCACTAAAGCGAGGCATATTTTTGAAATCGGAAGAGTCAGATGATGATAGATGGATTCAAATCTCTTATGAAAAATTACCGGATTTCTGTTATGGGTGTGGCCACCTTGGACACACCATCAAAGAATGTGAAGATGAAGTTTAG
mRNA sequence
ATGCCTCGGATATGGAACCAAGAGCAAACTATCATTAGAAATGTGGGTTTTAATATGTTTCTCTGCAAATTCAAGAATGGGCGGATCAAAAAGTTTATCATGGAATCTGGACCATGGTTCTTTGATAAGGCACTTATTCTCATGAAGGAACCAAAAGGAGGGAATTTTGGGGACGACATCGACTTCAGGTTTGCTTCTTTTTGGATTCATTTTCATAAATTACCATTTGCTTGTTTTTCCAGGAAGGTGGCAGCGGAAATTGGGAGTCTCCTAGGCAAAGTGGAACAAGTGGATATTGAAGAGGAGATTGATCAAAGTTGGGGAGGCTCTCTACGGGTGAAGATCCAAATTGATGTGACCAAACCACTAAAGCGAGGCATATTTTTGAAATCGGAAGAGTCAGATGATGATAGATGGATTCAAATCTCTTATGAAAAATTACCGGATTTCTGTTATGGGTGTGGCCACCTTGGACACACCATCAAAGAATGTGAAGATGAAGTTTAG
Coding sequence (CDS)
ATGCCTCGGATATGGAACCAAGAGCAAACTATCATTAGAAATGTGGGTTTTAATATGTTTCTCTGCAAATTCAAGAATGGGCGGATCAAAAAGTTTATCATGGAATCTGGACCATGGTTCTTTGATAAGGCACTTATTCTCATGAAGGAACCAAAAGGAGGGAATTTTGGGGACGACATCGACTTCAGGTTTGCTTCTTTTTGGATTCATTTTCATAAATTACCATTTGCTTGTTTTTCCAGGAAGGTGGCAGCGGAAATTGGGAGTCTCCTAGGCAAAGTGGAACAAGTGGATATTGAAGAGGAGATTGATCAAAGTTGGGGAGGCTCTCTACGGGTGAAGATCCAAATTGATGTGACCAAACCACTAAAGCGAGGCATATTTTTGAAATCGGAAGAGTCAGATGATGATAGATGGATTCAAATCTCTTATGAAAAATTACCGGATTTCTGTTATGGGTGTGGCCACCTTGGACACACCATCAAAGAATGTGAAGATGAAGTTTAG
Protein sequence
MPRIWNQEQTIIRNVGFNMFLCKFKNGRIKKFIMESGPWFFDKALILMKEPKGGNFGDDIDFRFASFWIHFHKLPFACFSRKVAAEIGSLLGKVEQVDIEEEIDQSWGGSLRVKIQIDVTKPLKRGIFLKSEESDDDRWIQISYEKLPDFCYGCGHLGHTIKECEDEV
Homology
BLAST of Lcy12g000880 vs. ExPASy TrEMBL
Match:
A0A1S8AC25 (CCHC-type domain-containing protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1)
HSP 1 Score: 149.8 bits (377), Expect = 1.0e-32
Identity = 71/166 (42.77%), Postives = 106/166 (63.86%), Query Frame = 0
Query: 1 MPRIWNQEQTI-IRNVGFNMFLCKFKNGRIKKFIMESGPWFFDKALILMKEPKGGNFGDD 60
M R+W + + I +G N+F+ KF + K+ IM GPW FD+ALI + EP G
Sbjct: 60 MQRVWRTSREVKIEKLGENVFMFKFGSEVDKRSIMVGGPWHFDRALIGLTEPTGIGDIKK 119
Query: 61 IDFRFASFWIHFHKLPFACFSRKVAAEIGSLLGKVEQVDIEEEIDQSWGGSLRVKIQIDV 120
DF SFW+ H +P C S+ +AAE+G ++GKVE+V+ + + +G LR++I +D+
Sbjct: 120 QDFSHVSFWVQIHDVPIMCMSKDMAAELGKVIGKVEEVE-TDAAGECFGQFLRLRISVDI 179
Query: 121 TKPLKRGIFLKSEESD-DDRWIQISYEKLPDFCYGCGHLGHTIKEC 165
TKPLK+ I L+ EE D DD +++ YE+LPDFC+ CG +GH +EC
Sbjct: 180 TKPLKKIIELEQEEEDADDIPMRVMYERLPDFCFCCGRIGHQYREC 224
BLAST of Lcy12g000880 vs. ExPASy TrEMBL
Match:
A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)
HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 69/167 (41.32%), Postives = 104/167 (62.28%), Query Frame = 0
Query: 1 MPRIWN-QEQTIIRNVGFNMFLCKFKNGRIKKFIMESGPWFFDKALILMKEPKGGNFGDD 60
M +W T +G N+++ FK+ K ++ SGPW F+K+L+++ P N D
Sbjct: 58 MKSVWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLD 117
Query: 61 IDFRFASFWIHFHKLPFACFSRKVAAEIGSLLGKVEQVDIEEEIDQSWGGS-LRVKIQID 120
++F F +FWI H +PF C S ++A +G+ LG VE +IE + W G +RV+++ID
Sbjct: 118 MNFNFCAFWIQIHNIPFECISTEMANILGAKLGDVE--EIEGDGADGWAGPFIRVRVKID 177
Query: 121 VTKPLKRGIFLKSEESDDDRWIQISYEKLPDFCYGCGHLGHTIKECE 166
V+KPL+RGI LK+ + D W + YEKLPDFCY CG +GH+ +ECE
Sbjct: 178 VSKPLRRGIKLKNSDG-KDIWCPLRYEKLPDFCYECGKIGHSGRECE 221
BLAST of Lcy12g000880 vs. ExPASy TrEMBL
Match:
A0A5C7HLK8 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018469 PE=4 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 5.5e-31
Identity = 63/166 (37.95%), Postives = 103/166 (62.05%), Query Frame = 0
Query: 3 RIWNQEQTI-IRNVGFNMFLCKFKNGRIKKFIMESGPWFFDKALILMKEPKGGNFGDDID 62
++W+Q + I +VG N+F+ KF N + I + GPW+FDK+L+++ +G +
Sbjct: 62 QLWSQFSRVEIESVGVNVFMFKFNNKEERNRIWQRGPWYFDKSLMVLVRLEGMGNISQLR 121
Query: 63 FRFASFWIHFHKLPFACFSRKVAAEIGSLLGKVEQVDIEEEIDQSWGGSLRVKIQIDVTK 122
F WI + +P C +R++A + +G+V +DI E WG L+VK+QID+TK
Sbjct: 122 FNSVEMWIQNYDVPIICMNRRLAKWMAEQIGRV--IDIPTESKDCWGKFLKVKVQIDITK 181
Query: 123 PLKRGIFLKSEESDDDRWIQISYEKLPDFCYGCGHLGHTIKECEDE 168
PLK+ ++L+ E+S + + + YE+LP+FCY CG +GH KECED+
Sbjct: 182 PLKQWLWLRMEQSSEIVMVSLKYERLPEFCYVCGRIGHASKECEDK 225
BLAST of Lcy12g000880 vs. ExPASy TrEMBL
Match:
A0A5C7ISG5 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000005 PE=4 SV=1)
HSP 1 Score: 143.7 bits (361), Expect = 7.2e-31
Identity = 62/155 (40.00%), Postives = 97/155 (62.58%), Query Frame = 0
Query: 12 IRNVGFNMFLCKFKNGRIKKFIMESGPWFFDKALILMKEPKGGNFGDDIDFRFASFWIHF 71
I +V FN+F+ KF N + I + GPW+F+K+LI++++P+G + F WI
Sbjct: 74 IESVEFNIFMFKFINQEERNRIWQRGPWYFEKSLIVLEKPEGRGSISQLKFNKVELWIQI 133
Query: 72 HKLPFACFSRKVAAEIGSLLGKVEQVDIEEEIDQSWGGSLRVKIQIDVTKPLKRGIFLKS 131
H +P C +++ A + +G+V ++I E WG L+VK+QID+TKPLKR + LK
Sbjct: 134 HDVPIICMNKRTAKWMAEQIGRV--IEIPFESKDCWGKFLKVKVQIDITKPLKRWLHLKL 193
Query: 132 EESDDDRWIQISYEKLPDFCYGCGHLGHTIKECED 167
++S+D + + YE+LP+FCY CG +GH KEC D
Sbjct: 194 DKSNDIVMVSLKYERLPEFCYVCGRIGHANKECSD 226
BLAST of Lcy12g000880 vs. ExPASy TrEMBL
Match:
A0A6P9E2G0 (uncharacterized protein LOC118344688 OS=Juglans regia OX=51240 GN=LOC118344688 PE=4 SV=1)
HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 68/165 (41.21%), Postives = 99/165 (60.00%), Query Frame = 0
Query: 1 MPRIWNQEQTI-IRNVGFNMFLCKFKNGRIKKFIMESGPWFFDKALILMKEPKGGNFGDD 60
M R+WN E I +++G N FL KF N ++ ++ S PW FD+ LI ++E KG D
Sbjct: 59 MTRLWNGEDVITFKDLGRNKFLLKFHNPIVRTKVLTSRPWSFDRNLICIQECKGSLALKD 118
Query: 61 IDFRFASFWIHFHKLPFACFSRKVAAEIGSLLGKVEQVDIEEEIDQSWGGSLRVKIQIDV 120
+DF FW+ H LPFA +++ ++G+ GKV VD++E+ +SWGG LRVK+ I++
Sbjct: 119 LDFSLEPFWLQLHDLPFAAMNKRTGEKLGTSAGKVIMVDVDEK-GRSWGGVLRVKVMINL 178
Query: 121 TKPLKRGIFLKSEESDDDRWIQISYEKLPDFCYGCGHLGHTIKEC 165
+KPL RG + D WI YE+LP FCY CG + H+ C
Sbjct: 179 SKPLTRGCVI--NVGDARSWIPFKYERLPSFCYYCGIVLHSQHRC 220
BLAST of Lcy12g000880 vs. NCBI nr
Match:
XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])
HSP 1 Score: 146.4 bits (368), Expect = 2.3e-31
Identity = 69/167 (41.32%), Postives = 104/167 (62.28%), Query Frame = 0
Query: 1 MPRIWN-QEQTIIRNVGFNMFLCKFKNGRIKKFIMESGPWFFDKALILMKEPKGGNFGDD 60
M +W T +G N+++ FK+ K ++ SGPW F+K+L+++ P N D
Sbjct: 58 MKSVWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLD 117
Query: 61 IDFRFASFWIHFHKLPFACFSRKVAAEIGSLLGKVEQVDIEEEIDQSWGGS-LRVKIQID 120
++F F +FWI H +PF C S ++A +G+ LG VE +IE + W G +RV+++ID
Sbjct: 118 MNFNFCAFWIQIHNIPFECISTEMANILGAKLGDVE--EIEGDGADGWAGPFIRVRVKID 177
Query: 121 VTKPLKRGIFLKSEESDDDRWIQISYEKLPDFCYGCGHLGHTIKECE 166
V+KPL+RGI LK+ + D W + YEKLPDFCY CG +GH+ +ECE
Sbjct: 178 VSKPLRRGIKLKNSDG-KDIWCPLRYEKLPDFCYECGKIGHSGRECE 221
BLAST of Lcy12g000880 vs. NCBI nr
Match:
TXG48193.1 (hypothetical protein EZV62_027487 [Acer yangbiense])
HSP 1 Score: 144.1 bits (362), Expect = 1.1e-30
Identity = 62/166 (37.35%), Postives = 100/166 (60.24%), Query Frame = 0
Query: 3 RIWNQ-EQTIIRNVGFNMFLCKFKNGRIKKFIMESGPWFFDKALILMKEPKGGNFGDDID 62
+IWNQ Q + VG N F+ F N + + GPW F K+LI++++PKG +
Sbjct: 62 QIWNQFGQVEVELVGENTFMFHFTNKEYRNKVWNRGPWLFGKSLIVLEKPKGPGDITKLK 121
Query: 63 FRFASFWIHFHKLPFACFSRKVAAEIGSLLGKVEQVDIEEEIDQSWGGSLRVKIQIDVTK 122
F A FW+ H +P C +++ + +G+V V+I E + WG +RVK+Q+D+TK
Sbjct: 122 FNQADFWVQIHDIPIMCMNQRTTKWLAEYIGEV--VEIPTESRECWGKYVRVKVQVDITK 181
Query: 123 PLKRGIFLKSEESDDDRWIQISYEKLPDFCYGCGHLGHTIKECEDE 168
PLKR + +K + ++ + + YE+LPDFC+ CG +GH+++EC DE
Sbjct: 182 PLKRWLRIKLGKYEEITMVALKYERLPDFCFACGRIGHSVRECLDE 225
BLAST of Lcy12g000880 vs. NCBI nr
Match:
TXG57156.1 (hypothetical protein EZV62_018469 [Acer yangbiense])
HSP 1 Score: 144.1 bits (362), Expect = 1.1e-30
Identity = 63/166 (37.95%), Postives = 103/166 (62.05%), Query Frame = 0
Query: 3 RIWNQEQTI-IRNVGFNMFLCKFKNGRIKKFIMESGPWFFDKALILMKEPKGGNFGDDID 62
++W+Q + I +VG N+F+ KF N + I + GPW+FDK+L+++ +G +
Sbjct: 62 QLWSQFSRVEIESVGVNVFMFKFNNKEERNRIWQRGPWYFDKSLMVLVRLEGMGNISQLR 121
Query: 63 FRFASFWIHFHKLPFACFSRKVAAEIGSLLGKVEQVDIEEEIDQSWGGSLRVKIQIDVTK 122
F WI + +P C +R++A + +G+V +DI E WG L+VK+QID+TK
Sbjct: 122 FNSVEMWIQNYDVPIICMNRRLAKWMAEQIGRV--IDIPTESKDCWGKFLKVKVQIDITK 181
Query: 123 PLKRGIFLKSEESDDDRWIQISYEKLPDFCYGCGHLGHTIKECEDE 168
PLK+ ++L+ E+S + + + YE+LP+FCY CG +GH KECED+
Sbjct: 182 PLKQWLWLRMEQSSEIVMVSLKYERLPEFCYVCGRIGHASKECEDK 225
BLAST of Lcy12g000880 vs. NCBI nr
Match:
TXG71426.1 (hypothetical protein EZV62_000005 [Acer yangbiense])
HSP 1 Score: 143.7 bits (361), Expect = 1.5e-30
Identity = 62/155 (40.00%), Postives = 97/155 (62.58%), Query Frame = 0
Query: 12 IRNVGFNMFLCKFKNGRIKKFIMESGPWFFDKALILMKEPKGGNFGDDIDFRFASFWIHF 71
I +V FN+F+ KF N + I + GPW+F+K+LI++++P+G + F WI
Sbjct: 74 IESVEFNIFMFKFINQEERNRIWQRGPWYFEKSLIVLEKPEGRGSISQLKFNKVELWIQI 133
Query: 72 HKLPFACFSRKVAAEIGSLLGKVEQVDIEEEIDQSWGGSLRVKIQIDVTKPLKRGIFLKS 131
H +P C +++ A + +G+V ++I E WG L+VK+QID+TKPLKR + LK
Sbjct: 134 HDVPIICMNKRTAKWMAEQIGRV--IEIPFESKDCWGKFLKVKVQIDITKPLKRWLHLKL 193
Query: 132 EESDDDRWIQISYEKLPDFCYGCGHLGHTIKECED 167
++S+D + + YE+LP+FCY CG +GH KEC D
Sbjct: 194 DKSNDIVMVSLKYERLPEFCYVCGRIGHANKECSD 226
BLAST of Lcy12g000880 vs. NCBI nr
Match:
XP_035541689.1 (uncharacterized protein LOC118344688 [Juglans regia])
HSP 1 Score: 142.9 bits (359), Expect = 2.5e-30
Identity = 68/165 (41.21%), Postives = 99/165 (60.00%), Query Frame = 0
Query: 1 MPRIWNQEQTI-IRNVGFNMFLCKFKNGRIKKFIMESGPWFFDKALILMKEPKGGNFGDD 60
M R+WN E I +++G N FL KF N ++ ++ S PW FD+ LI ++E KG D
Sbjct: 59 MTRLWNGEDVITFKDLGRNKFLLKFHNPIVRTKVLTSRPWSFDRNLICIQECKGSLALKD 118
Query: 61 IDFRFASFWIHFHKLPFACFSRKVAAEIGSLLGKVEQVDIEEEIDQSWGGSLRVKIQIDV 120
+DF FW+ H LPFA +++ ++G+ GKV VD++E+ +SWGG LRVK+ I++
Sbjct: 119 LDFSLEPFWLQLHDLPFAAMNKRTGEKLGTSAGKVIMVDVDEK-GRSWGGVLRVKVMINL 178
Query: 121 TKPLKRGIFLKSEESDDDRWIQISYEKLPDFCYGCGHLGHTIKEC 165
+KPL RG + D WI YE+LP FCY CG + H+ C
Sbjct: 179 SKPLTRGCVI--NVGDARSWIPFKYERLPSFCYYCGIVLHSQHRC 220
BLAST of Lcy12g000880 vs. TAIR 10
Match:
AT3G42140.1 (zinc ion binding;nucleic acid binding )
HSP 1 Score: 50.4 bits (119), Expect = 1.6e-06
Identity = 29/132 (21.97%), Postives = 49/132 (37.12%), Query Frame = 0
Query: 33 IMESGPWFFDKALILMKEPKGGNFGDDIDFRFASFWIHFHKLPFACFSRKVAAEIGSLLG 92
I+ GPW F+ + +++ + D +F+ FWI +P + ++ IG
Sbjct: 75 ILRRGPWSFNDWMCVIQ--RWTKLHSDAEFKRIPFWIQIRGIPLRFLTARIITSIGE--- 134
Query: 93 KVEQVDIEEEIDQSWGGSLRVKIQIDVTKPLKRGIFLKSEESDDDRWIQISYEKLPDFCY 152
+ G+FL++ D ++ YEKL +FC
Sbjct: 135 -------------------------------RMGLFLETNLGRDVSVLKFQYEKLKNFCT 170
Query: 153 GCGHLGHTIKEC 165
CG L H EC
Sbjct: 195 TCGMLSHDASEC 170
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S8AC25 | 1.0e-32 | 42.77 | CCHC-type domain-containing protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1 | [more] |
| A0A6J1D765 | 1.1e-31 | 41.32 | uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017... | [more] |
| A0A5C7HLK8 | 5.5e-31 | 37.95 | CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01846... | [more] |
| A0A5C7ISG5 | 7.2e-31 | 40.00 | CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00000... | [more] |
| A0A6P9E2G0 | 1.2e-30 | 41.21 | uncharacterized protein LOC118344688 OS=Juglans regia OX=51240 GN=LOC118344688 P... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_022149484.1 | 2.3e-31 | 41.32 | uncharacterized protein LOC111017902 [Momordica charantia] | [more] |
| TXG48193.1 | 1.1e-30 | 37.35 | hypothetical protein EZV62_027487 [Acer yangbiense] | [more] |
| TXG57156.1 | 1.1e-30 | 37.95 | hypothetical protein EZV62_018469 [Acer yangbiense] | [more] |
| TXG71426.1 | 1.5e-30 | 40.00 | hypothetical protein EZV62_000005 [Acer yangbiense] | [more] |
| XP_035541689.1 | 2.5e-30 | 41.21 | uncharacterized protein LOC118344688 [Juglans regia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G42140.1 | 1.6e-06 | 21.97 | zinc ion binding;nucleic acid binding | [more] |
