Lcy12g000610 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g000610
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr12: 737310 .. 737825 (+)
RNA-Seq ExpressionLcy12g000610
SyntenyLcy12g000610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACATTGGATAACAGATCGATTCCAAGTAGAGGACGCGTTTACATCTTATTTTGAGAAATTATTTCAGTCTGACGATCCGTTATCAGAGGTCATGGACAATGCTCTTCAGGATATTCAGGAAAAGGTCACCTCAGATATGAACGCTAAGCTGTTGGCTCCTTTCTCACGTGCTGAAATTGAATTAGCAATCAAACAGATGCATTCGTCTAAGGCTCCAGGTCCAGATGGTTTTCCAGCGCTATTTTATCAGAAATTCTGGTCAGAGGTTGGTGATACCACGGTTCTAAATTGTTTGGAAATTCTTAATCAAGCTCGTTTTGTGGCGGACTGGAATTACACCTATATTGCACTCATTCCCAAGTCAACTTCTCCCAAAAAAGTTTCTGGTTACCGGCCCATTAGTCTGTGTAATGTGGTTTATAAAATCATTGCAAAGGTGATCGTTAATCGAATGAAAGGAGTTTTTCGAGCAATAATCTCTGAAAACCGTTCCTGGGTAGTCCATCTTTGA

mRNA sequence

ATGGGACATTGGATAACAGATCGATTCCAAGTAGAGGACGCGTTTACATCTTATTTTGAGAAATTATTTCAGTCTGACGATCCGTTATCAGAGGTCATGGACAATGCTCTTCAGGATATTCAGGAAAAGGTCACCTCAGATATGAACGCTAAGCTGTTGGCTCCTTTCTCACGTGCTGAAATTGAATTAGCAATCAAACAGATGCATTCGTCTAAGGCTCCAGGTCCAGATGGTTTTCCAGCGCTATTTTATCAGAAATTCTGGTCAGAGGTTGGTGATACCACGGTTCTAAATTGTTTGGAAATTCTTAATCAAGCTCGTTTTGTGGCGGACTGGAATTACACCTATATTGCACTCATTCCCAAGTCAACTTCTCCCAAAAAAGTTTCTGGTTACCGGCCCATTAGTCTGTGTAATGTGGTTTATAAAATCATTGCAAAGGTGATCGTTAATCGAATGAAAGGAGTTTTTCGAGCAATAATCTCTGAAAACCGTTCCTGGGTAGTCCATCTTTGA

Coding sequence (CDS)

ATGGGACATTGGATAACAGATCGATTCCAAGTAGAGGACGCGTTTACATCTTATTTTGAGAAATTATTTCAGTCTGACGATCCGTTATCAGAGGTCATGGACAATGCTCTTCAGGATATTCAGGAAAAGGTCACCTCAGATATGAACGCTAAGCTGTTGGCTCCTTTCTCACGTGCTGAAATTGAATTAGCAATCAAACAGATGCATTCGTCTAAGGCTCCAGGTCCAGATGGTTTTCCAGCGCTATTTTATCAGAAATTCTGGTCAGAGGTTGGTGATACCACGGTTCTAAATTGTTTGGAAATTCTTAATCAAGCTCGTTTTGTGGCGGACTGGAATTACACCTATATTGCACTCATTCCCAAGTCAACTTCTCCCAAAAAAGTTTCTGGTTACCGGCCCATTAGTCTGTGTAATGTGGTTTATAAAATCATTGCAAAGGTGATCGTTAATCGAATGAAAGGAGTTTTTCGAGCAATAATCTCTGAAAACCGTTCCTGGGTAGTCCATCTTTGA

Protein sequence

MGHWITDRFQVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQEKVTSDMNAKLLAPFSRAEIELAIKQMHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALIPKSTSPKKVSGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENRSWVVHL
Homology
BLAST of Lcy12g000610 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 4.6e-14
Identity = 54/164 (32.93%), Postives = 86/164 (52.44%), Query Frame = 0

Query: 2   GHWITDRFQVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQ-EKVTSDMNAKLLAPFSRAE 61
           G   TD  ++++   S++++L+ +     + MD  L   Q  K+  D    L +P S  E
Sbjct: 405 GDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKE 464

Query: 62  IELAIKQMHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCL--EILNQARFVADWNYTYIA 121
           IE  I  + + K+PGPDGF A FYQ F  ++    +L+ L  +I  +      +    I 
Sbjct: 465 IEAVINSLPTKKSPGPDGFSAEFYQTFKEDL--IPILHKLFHKIEVEGTLPNSFYEATIT 524

Query: 122 LIPK-STSPKKVSGYRPISLCNVVYKIIAKVIVNRMKGVFRAII 162
           LIPK    P K+  +RPISL N+  KI+ K++ NR++   +AII
Sbjct: 525 LIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAII 566

BLAST of Lcy12g000610 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 47/165 (28.48%), Postives = 78/165 (47.27%), Query Frame = 0

Query: 5   ITDRFQVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQEKVTSDMNAKLLAPFSRAEIELA 64
           + D   + D   S+++ LF S DP+S      L D    V+     +L  P +  E+  A
Sbjct: 399 LEDPEAIRDRARSFYQNLF-SPDPISPDACEELWDGLPVVSERRKERLETPITLDELSQA 458

Query: 65  IKQMHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALIPKST 124
           ++ M  +K+PG DG    F+Q FW  +G        E   +           ++L+PK  
Sbjct: 459 LRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKG 518

Query: 125 SPKKVSGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENRSWVV 170
             + +  +RP+SL +  YKI+AK I  R+K V   +I  ++S+ V
Sbjct: 519 DLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTV 562

BLAST of Lcy12g000610 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-12
Identity = 49/163 (30.06%), Postives = 82/163 (50.31%), Query Frame = 0

Query: 6   TDRFQVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQEKVTSDMNAKLL-APFSRAEIELA 65
           TD  +++     Y++KL+       + +D  L+       S    ++L  P S +EI   
Sbjct: 401 TDPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIAST 460

Query: 66  IKQMHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNY-TYIALIPK- 125
           I+ +   K+PGPDGF + FYQ F  E+    +LN  + + +   + +  Y   I LIPK 
Sbjct: 461 IQNLPKKKSPGPDGFTSEFYQTFKEEL-VPILLNLFQNIEKEGILPNTFYEANITLIPKP 520

Query: 126 STSPKKVSGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENR 166
              P +   YRPISL N+  KI+ K++ NR++   + II  ++
Sbjct: 521 GKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQ 562

BLAST of Lcy12g000610 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.9e-10
Identity = 45/166 (27.11%), Postives = 77/166 (46.39%), Query Frame = 0

Query: 2   GHWITDRFQVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQ-EKVTSDMNAKLLAPFSRAE 61
           G   TD  +++     Y++ L+ +     E MD  L      ++  +    L  P + +E
Sbjct: 398 GDITTDPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSE 457

Query: 62  IELAIKQMHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALI 121
           I   I  + + K+PGPDGF A FYQ++  E+    +     I  +      +    I LI
Sbjct: 458 IVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILI 517

Query: 122 PK-STSPKKVSGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENR 166
           PK      K   +RPISL N+  KI+ K++ NR++   + +I  ++
Sbjct: 518 PKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQ 563

BLAST of Lcy12g000610 vs. ExPASy TrEMBL
Match: A0A6P9EBC5 (uncharacterized protein LOC118348020 OS=Juglans regia OX=51240 GN=LOC118348020 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-38
Identity = 84/165 (50.91%), Postives = 110/165 (66.67%), Query Frame = 0

Query: 2   GHWITDRFQVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQEKVTSDMNAKLLAPFSRAEI 61
           G     + +V++AF SYFE+LF + +P +  M+  LQ+I  +VTS+MN KL  PFS+ EI
Sbjct: 148 GRVFRGQVEVDEAFRSYFERLFSTSNPNTAAMEKCLQNIVPRVTSEMNEKLSRPFSKLEI 207

Query: 62  ELAIKQMHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALIP 121
           E+ IK M   K+PGPDGF A FYQ  W+ VGD      L++LN     +  N+TYI LIP
Sbjct: 208 EVVIKSMAPLKSPGPDGFGACFYQNHWATVGDKVCSTVLDLLNGKTSFSSVNHTYIVLIP 267

Query: 122 KSTSPKKVSGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENRS 167
           KS  PK V+ YRPISLCNV+YK+ +KVI NR+K V  A IS N+S
Sbjct: 268 KSKDPKLVTEYRPISLCNVIYKVASKVIANRLKEVLSASISANQS 312

BLAST of Lcy12g000610 vs. ExPASy TrEMBL
Match: A0A2I4ETF9 (uncharacterized protein LOC108992555 OS=Juglans regia OX=51240 GN=LOC108992555 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 8.9e-37
Identity = 81/157 (51.59%), Postives = 108/157 (68.79%), Query Frame = 0

Query: 10  QVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQEKVTSDMNAKLLAPFSRAEIELAIKQMH 69
           +V++ F SYFE+LF + +P +  M+  LQ+I  +VTS+MN +L  PFS+ EIE+AIK M 
Sbjct: 13  EVDEDFRSYFERLFSTSNPNTAAMEKCLQNIVPRVTSEMNERLSRPFSKLEIEVAIKSMA 72

Query: 70  SSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALIPKSTSPKKV 129
             K+PGPDGF A FYQ  W+ VGD   L  L++LN     +  N+T+I LIPKS  PK V
Sbjct: 73  PLKSPGPDGFGACFYQNHWATVGDKVCLTVLDLLNGKTPFSSVNHTFIVLIPKSKDPKLV 132

Query: 130 SGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENRS 167
           + Y PISLCNV+YK+ +KVI NR+K V  A IS N+S
Sbjct: 133 TEYGPISLCNVIYKMASKVIANRLKEVLSATISANQS 169

BLAST of Lcy12g000610 vs. ExPASy TrEMBL
Match: A0A6P9F758 (uncharacterized protein LOC118349891 OS=Juglans regia OX=51240 GN=LOC118349891 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.0e-36
Identity = 81/165 (49.09%), Postives = 108/165 (65.45%), Query Frame = 0

Query: 2   GHWITDRFQVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQEKVTSDMNAKLLAPFSRAEI 61
           G     + +V++AF SYFE+LF + +P +  M+  LQ+I   VTS+MN +L  PFS+ EI
Sbjct: 190 GRVFRGQVEVDEAFRSYFERLFSTSNPNTAAMEKCLQNIVPWVTSEMNERLSRPFSKLEI 249

Query: 62  ELAIKQMHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALIP 121
           E+ IK M   K+PGPDGF A FYQ  W+ VGD      L++LN     +  N+T+I LIP
Sbjct: 250 EVVIKSMAPLKSPGPDGFGACFYQNHWATVGDKVCSTVLDLLNGKTSFSSVNHTFIVLIP 309

Query: 122 KSTSPKKVSGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENRS 167
           KS  PK V+ Y PISLCNV+YK+ +KVI NR+K V  A IS N+S
Sbjct: 310 KSKDPKLVTEYTPISLCNVIYKVASKVIANRLKEVLSASISANQS 354

BLAST of Lcy12g000610 vs. ExPASy TrEMBL
Match: A0A2N9IBV7 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49442 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.8e-36
Identity = 75/163 (46.01%), Postives = 112/163 (68.71%), Query Frame = 0

Query: 4   WITDRFQVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQEKVTSDMNAKLLAPFSRAEIEL 63
           W TD  Q+ED   SYF+ +F +  P++  +++ L  +  +VT ++N +LL PF+  E+ +
Sbjct: 733 WCTDESQIEDIAVSYFDDIFHTSTPVN--LEDTLTAVNSRVTPEVNQRLLQPFTADEVRM 792

Query: 64  AIKQMHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALIPKS 123
           A+ QMH SKAPGPDG  + F+QK+W+ VG   V   L +LN  + +   N T+I+LIPK 
Sbjct: 793 ALFQMHPSKAPGPDGMSSFFFQKYWNIVGADVVAAVLSVLNSGKILRKINLTHISLIPKK 852

Query: 124 TSPKKVSGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENRS 167
            +P+++S YRPISLCNVVYKII+KV+ NR+K V   IIS+++S
Sbjct: 853 KNPERMSEYRPISLCNVVYKIISKVLANRLKVVLPCIISDSQS 893

BLAST of Lcy12g000610 vs. ExPASy TrEMBL
Match: A0A2N9HKS5 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40714 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.8e-36
Identity = 75/163 (46.01%), Postives = 112/163 (68.71%), Query Frame = 0

Query: 4   WITDRFQVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQEKVTSDMNAKLLAPFSRAEIEL 63
           W TD  Q+ED   SYF+ +F +  P++  +++ L  +  +VT ++N +LL PF+  E+ +
Sbjct: 677 WCTDESQIEDIAVSYFDDIFHTSTPVN--LEDTLTAVNSRVTPEVNQRLLQPFTADEVRM 736

Query: 64  AIKQMHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALIPKS 123
           A+ QMH SKAPGPDG  + F+QK+W+ VG   V   L +LN  + +   N T+I+LIPK 
Sbjct: 737 ALFQMHPSKAPGPDGMSSFFFQKYWNIVGADVVAAVLSVLNSGKILRKINLTHISLIPKK 796

Query: 124 TSPKKVSGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENRS 167
            +P+++S YRPISLCNVVYKII+KV+ NR+K V   IIS+++S
Sbjct: 797 KNPERMSEYRPISLCNVVYKIISKVLANRLKVVLPCIISDSQS 837

BLAST of Lcy12g000610 vs. NCBI nr
Match: XP_035544636.1 (uncharacterized protein LOC118348020 [Juglans regia])

HSP 1 Score: 169.1 bits (427), Expect = 3.3e-38
Identity = 84/165 (50.91%), Postives = 110/165 (66.67%), Query Frame = 0

Query: 2   GHWITDRFQVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQEKVTSDMNAKLLAPFSRAEI 61
           G     + +V++AF SYFE+LF + +P +  M+  LQ+I  +VTS+MN KL  PFS+ EI
Sbjct: 148 GRVFRGQVEVDEAFRSYFERLFSTSNPNTAAMEKCLQNIVPRVTSEMNEKLSRPFSKLEI 207

Query: 62  ELAIKQMHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALIP 121
           E+ IK M   K+PGPDGF A FYQ  W+ VGD      L++LN     +  N+TYI LIP
Sbjct: 208 EVVIKSMAPLKSPGPDGFGACFYQNHWATVGDKVCSTVLDLLNGKTSFSSVNHTYIVLIP 267

Query: 122 KSTSPKKVSGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENRS 167
           KS  PK V+ YRPISLCNV+YK+ +KVI NR+K V  A IS N+S
Sbjct: 268 KSKDPKLVTEYRPISLCNVIYKVASKVIANRLKEVLSASISANQS 312

BLAST of Lcy12g000610 vs. NCBI nr
Match: XP_018822692.1 (uncharacterized protein LOC108992555 [Juglans regia] >KAF5466911.1 hypothetical protein F2P56_016793 [Juglans regia])

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-36
Identity = 81/157 (51.59%), Postives = 108/157 (68.79%), Query Frame = 0

Query: 10  QVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQEKVTSDMNAKLLAPFSRAEIELAIKQMH 69
           +V++ F SYFE+LF + +P +  M+  LQ+I  +VTS+MN +L  PFS+ EIE+AIK M 
Sbjct: 13  EVDEDFRSYFERLFSTSNPNTAAMEKCLQNIVPRVTSEMNERLSRPFSKLEIEVAIKSMA 72

Query: 70  SSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALIPKSTSPKKV 129
             K+PGPDGF A FYQ  W+ VGD   L  L++LN     +  N+T+I LIPKS  PK V
Sbjct: 73  PLKSPGPDGFGACFYQNHWATVGDKVCLTVLDLLNGKTPFSSVNHTFIVLIPKSKDPKLV 132

Query: 130 SGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENRS 167
           + Y PISLCNV+YK+ +KVI NR+K V  A IS N+S
Sbjct: 133 TEYGPISLCNVIYKMASKVIANRLKEVLSATISANQS 169

BLAST of Lcy12g000610 vs. NCBI nr
Match: XP_035551723.1 (uncharacterized protein LOC118349891 [Juglans regia])

HSP 1 Score: 162.2 bits (409), Expect = 4.1e-36
Identity = 81/165 (49.09%), Postives = 108/165 (65.45%), Query Frame = 0

Query: 2   GHWITDRFQVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQEKVTSDMNAKLLAPFSRAEI 61
           G     + +V++AF SYFE+LF + +P +  M+  LQ+I   VTS+MN +L  PFS+ EI
Sbjct: 190 GRVFRGQVEVDEAFRSYFERLFSTSNPNTAAMEKCLQNIVPWVTSEMNERLSRPFSKLEI 249

Query: 62  ELAIKQMHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALIP 121
           E+ IK M   K+PGPDGF A FYQ  W+ VGD      L++LN     +  N+T+I LIP
Sbjct: 250 EVVIKSMAPLKSPGPDGFGACFYQNHWATVGDKVCSTVLDLLNGKTSFSSVNHTFIVLIP 309

Query: 122 KSTSPKKVSGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENRS 167
           KS  PK V+ Y PISLCNV+YK+ +KVI NR+K V  A IS N+S
Sbjct: 310 KSKDPKLVTEYTPISLCNVIYKVASKVIANRLKEVLSASISANQS 354

BLAST of Lcy12g000610 vs. NCBI nr
Match: XP_006487889.1 (uncharacterized protein LOC102617714 [Citrus sinensis])

HSP 1 Score: 161.4 bits (407), Expect = 7.0e-36
Identity = 81/165 (49.09%), Postives = 104/165 (63.03%), Query Frame = 0

Query: 2   GHWITDRFQVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQEKVTSDMNAKLLAPFSRAEI 61
           G W  D  +VE  F  +F  LF +  P +E MD A +D   KV  +MN +L APF   EI
Sbjct: 300 GKWTEDSDEVERIFCEHFTTLFSTTAPTAEQMDAAFKDTSAKVNEEMNFQLDAPFMEEEI 359

Query: 62  ELAIKQMHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALIP 121
             A+ QM  +KAPGPDG PA F+QK W  V +  +  CL ILN    +A  N+TYIALIP
Sbjct: 360 VEALAQMCPTKAPGPDGLPAAFFQKHWGSVKEGVITTCLHILNDKGNLAPLNHTYIALIP 419

Query: 122 KSTSPKKVSGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENRS 167
           K+T PK VS +RPISLCNV+Y+IIAK + N +K +   I+S N+S
Sbjct: 420 KTTKPKSVSEFRPISLCNVIYRIIAKSMANGLKHILDKIVSPNQS 464

BLAST of Lcy12g000610 vs. NCBI nr
Match: XP_030936391.1 (uncharacterized protein LOC115961572 [Quercus lobata])

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-35
Identity = 79/169 (46.75%), Postives = 104/169 (61.54%), Query Frame = 0

Query: 2   GHWITDRFQVEDAFTSYFEKLFQSDDPLSEVMDNALQDIQEKVTSDMNAKLLAPFSRAEI 61
           G W  D  ++E+   +YFEKLF S  P  E   + L  +Q KVT+DMN +L   ++  E+
Sbjct: 384 GRWQEDELKIEEVAVAYFEKLFTSSKP--EEFSDILHAVQPKVTTDMNVELTREYTAQEV 443

Query: 62  ELAIKQMHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALIP 121
            LA+KQM+  KAPGPDG P LF+Q FW+  G+      L+ LN      ++N T+I LIP
Sbjct: 444 RLALKQMYPLKAPGPDGMPPLFFQHFWNTCGEVVTSTVLDFLNHGMSPPNFNETHIVLIP 503

Query: 122 KSTSPKKVSGYRPISLCNVVYKIIAKVIVNRMKGVFRAIISENRSWVVH 171
           K   PK VS YRPISLCNV YKI +K I NR+K    +IIS+ +S  VH
Sbjct: 504 KINEPKHVSDYRPISLCNVTYKIASKAIANRLKKFLPSIISDTQSAFVH 550

BLAST of Lcy12g000610 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 50/138 (36.23%), Postives = 73/138 (52.90%), Query Frame = 0

Query: 10  QVEDAFTSYFEKLFQSD-DPLSEVMDNALQDIQE-KVTSDMNAKLLAPFSRAEIELAIKQ 69
           QV++   +Y+  L  SD D L+      ++DI   +    + ++L A  S  EI  A+  
Sbjct: 483 QVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFA 542

Query: 70  MHSSKAPGPDGFPALFYQKFWSEVGDTTVLNCLEILNQARFVADWNYTYIALIPKSTSPK 129
           M  +KAPGPD F A F+ + W  V D+T+    E       +  +N T I LIPK T   
Sbjct: 543 MPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVD 602

Query: 130 KVSGYRPISLCNVVYKII 146
           ++S +RP+S C VVYKII
Sbjct: 603 QLSMFRPVSCCTVVYKII 620

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P113694.6e-1432.93LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE... [more]
P143811.7e-1328.48Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV... [more]
P085483.3e-1230.06LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1[more]
O003708.9e-1027.11LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6P9EBC51.6e-3850.91uncharacterized protein LOC118348020 OS=Juglans regia OX=51240 GN=LOC118348020 P... [more]
A0A2I4ETF98.9e-3751.59uncharacterized protein LOC108992555 OS=Juglans regia OX=51240 GN=LOC108992555 P... [more]
A0A6P9F7582.0e-3649.09uncharacterized protein LOC118349891 OS=Juglans regia OX=51240 GN=LOC118349891 P... [more]
A0A2N9IBV75.8e-3646.01Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9HKS55.8e-3646.01Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
Match NameE-valueIdentityDescription
XP_035544636.13.3e-3850.91uncharacterized protein LOC118348020 [Juglans regia][more]
XP_018822692.11.8e-3651.59uncharacterized protein LOC108992555 [Juglans regia] >KAF5466911.1 hypothetical ... [more]
XP_035551723.14.1e-3649.09uncharacterized protein LOC118349891 [Juglans regia][more]
XP_006487889.17.0e-3649.09uncharacterized protein LOC102617714 [Citrus sinensis][more]
XP_030936391.12.6e-3546.75uncharacterized protein LOC115961572 [Quercus lobata][more]
Match NameE-valueIdentityDescription
AT1G43760.11.9e-1536.23DNAse I-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 2..166
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 2..166
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 12..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g000610.1Lcy12g000610.1mRNA