Lcy12g000290 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g000290
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Replication-associated protein
Location	Chr12: 343875 .. 344632 (-)
RNA-Seq Expression	Lcy12g000290
Synteny	Lcy12g000290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGGAGAGAGAAGCTCTCTGTACGAAGGCAATTGGGTCATCTCAAAACTCTCCAGCAATCGGGTCTGTATTTTTCTGCGTACGGAGAGTTTTGGGAGGACCCAATTGTCTTCGAACGGAGAGCTTCTCTCTCCTACTTTACTATTTCTTAGGGTTTCAAAATGCCGCGACAGAAGAAGTTTCTGGTGAATGCGAAAAACTATTTTCTCACTTATCCTAAGTGTTCGTTGTCTAAAGATGAAGTTCTTGCGCAGATTTTGCAAATTAAATGTGTGTCGAAGATCAAGTTCGTTAAGGTTTGTAGGGAATTGCATCAAGACGACAATCCCCACATTCACGTCCTGTTGCAGTTTGAAGGGAAATTCAAATGTCGGAACGAACGACTCTTCGACCTCCATTCCCCATCCTATTCGCAACAGTTCCATCCCAACATACAAGGTGCAAAGTCAAGTTCAAATGTCAAAGCCTATATCGACAAAGACAGAGATACAATCGAATGGGGAACGTTTCAAGTCGACGGAAGAAGTTCTCGCGGAGGTCAGCAAACGACTAACGACGCTTGCGCAAGGGCTTTAAATTCTGGATCGGCTGATGCAGCGTTGAACATAATCAGAGAGTTGCTTCCGAAAGATTTCATTTTCGGTTTTCACAATCTCAAATCAAATTTGGATAGAATATTTGCCATACCACCAACACCTTATGAATCCAGATTTTGTCTGAATTCGTTCACTAGGGTTACTCGTGTAATGTTGGACTAG

mRNA sequence

GTAGGAGAGAGAAGCTCTCTGTACGAAGGCAATTGGGTCATCTCAAAACTCTCCAGCAATCGGGTCTGTATTTTTCTGCGTACGGAGAGTTTTGGGAGGACCCAATTGTCTTCGAACGGAGAGCTTCTCTCTCCTACTTTACTATTTCTTAGGGTTTCAAAATGCCGCGACAGAAGAAGTTTCTGGTGAATGCGAAAAACTATTTTCTCACTTATCCTAAGTGTTCGTTGTCTAAAGATGAAGTTCTTGCGCAGATTTTGCAAATTAAATGTGTGTCGAAGATCAAGTTCGTTAAGGTTTGTAGGGAATTGCATCAAGACGACAATCCCCACATTCACGTCCTGTTGCAGTTTGAAGGGAAATTCAAATGTCGGAACGAACGACTCTTCGACCTCCATTCCCCATCCTATTCGCAACAGTTCCATCCCAACATACAAGGTGCAAAGTCAAGTTCAAATGTCAAAGCCTATATCGACAAAGACAGAGATACAATCGAATGGGGAACGTTTCAAGTCGACGGAAGAAGTTCTCGCGGAGGTCAGCAAACGACTAACGACGCTTGCGCAAGGGCTTTAAATTCTGGATCGGCTGATGCAGCGTTGAACATAATCAGAGAGTTGCTTCCGAAAGATTTCATTTTCGGTTTTCACAATCTCAAATCAAATTTGGATAGAATATTTGCCATACCACCAACACCTTATGAATCCAGATTTTGTCTGAATTCGTTCACTAGGGTTACTCGTGTAATGTTGGACTAG

Coding sequence (CDS)

ATGCCGCGACAGAAGAAGTTTCTGGTGAATGCGAAAAACTATTTTCTCACTTATCCTAAGTGTTCGTTGTCTAAAGATGAAGTTCTTGCGCAGATTTTGCAAATTAAATGTGTGTCGAAGATCAAGTTCGTTAAGGTTTGTAGGGAATTGCATCAAGACGACAATCCCCACATTCACGTCCTGTTGCAGTTTGAAGGGAAATTCAAATGTCGGAACGAACGACTCTTCGACCTCCATTCCCCATCCTATTCGCAACAGTTCCATCCCAACATACAAGGTGCAAAGTCAAGTTCAAATGTCAAAGCCTATATCGACAAAGACAGAGATACAATCGAATGGGGAACGTTTCAAGTCGACGGAAGAAGTTCTCGCGGAGGTCAGCAAACGACTAACGACGCTTGCGCAAGGGCTTTAAATTCTGGATCGGCTGATGCAGCGTTGAACATAATCAGAGAGTTGCTTCCGAAAGATTTCATTTTCGGTTTTCACAATCTCAAATCAAATTTGGATAGAATATTTGCCATACCACCAACACCTTATGAATCCAGATTTTGTCTGAATTCGTTCACTAGGGTTACTCGTGTAATGTTGGACTAG

Protein sequence

MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHVLLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDGRSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPYESRFCLNSFTRVTRVMLD

Homology

[Close]

BLAST of Lcy12g000290 vs. ExPASy Swiss-Prot
Match: P38609 (Replication-associated protein OS=Tomato yellow leaf curl Sardinia virus (isolate Spain-1) OX=37139 GN=C1 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.0e-70
Identity = 118/192 (61.46%), Postives = 156/192 (81.25%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           M + K+F +NAK+YFL++PKCSLSK+E L Q+LQ++  +  K++K+CRELH+D  PH+H+
Sbjct: 1   MAQPKRFQINAKHYFLSFPKCSLSKEEALEQLLQLQTPTNKKYIKICRELHEDGQPHLHM 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           L+QFEGKF C+N R FDL SP+ S  FHPNIQGAKSSS+VK+YIDKD D +EWGTFQ+DG
Sbjct: 61  LIQFEGKFNCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDVLEWGTFQIDG 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQT NDA A+A+N+GS   AL++I+EL P+D+I  FHN+ SNLDR+F +PP PY
Sbjct: 121 RSARGGQQTANDAYAKAINAGSKSEALDVIKELAPRDYILHFHNINSNLDRVFQVPPAPY 180

Query: 181 ESRFCLNSFTRV 193
            S F  +SF +V
Sbjct: 181 VSPFLSSSFDQV 192

[Close]

BLAST of Lcy12g000290 vs. ExPASy Swiss-Prot
Match: Q82676 (Replication-associated protein OS=Indian cassava mosaic virus OX=31600 GN=AC1 PE=1 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.4e-69
Identity = 122/192 (63.54%), Postives = 153/192 (79.69%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           M   K+F +NAKNYFLTYP+CSL+K+E L+QI   +  +  KF+K+CRELH++  PH+HV
Sbjct: 1   MSPPKRFQINAKNYFLTYPRCSLTKEEALSQIRNFQTPTNPKFIKICRELHENGEPHLHV 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           L+QFEGK+KC+N+R FDL SP+ S  FHPNIQGAKSSS+VK+YIDKD DT  WGTFQ+DG
Sbjct: 61  LIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTWRWGTFQIDG 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQ+ NDA A ALNSGS   AL I+REL P+D++  FH++ SNLDRIF  PP PY
Sbjct: 121 RSARGGQQSANDAYAAALNSGSKSEALKILRELAPRDYLRDFHHISSNLDRIFTKPPPPY 180

Query: 181 ESRFCLNSFTRV 193
           E+ F L+SF RV
Sbjct: 181 ENPFPLSSFDRV 192

[Close]

BLAST of Lcy12g000290 vs. ExPASy Swiss-Prot
Match: Q67620 (Replication-associated protein OS=Tomato yellow leaf curl Sardinia virus (isolate Spain-2) OX=221538 GN=C1 PE=1 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 7.5e-69
Identity = 116/192 (60.42%), Postives = 154/192 (80.21%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           M + K+F +NAK+YFLT+PKCSLSK+E L Q+LQ++  +  K++K+CRELH+D  PH+H+
Sbjct: 1   MAQPKRFQINAKHYFLTFPKCSLSKEEALEQLLQLQTPTNKKYIKICRELHEDGQPHLHM 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           L+QFEGKF C+N R FDL SP+ S  FHPNIQGAKSSS+VK+YIDKD D +EWGTFQ+DG
Sbjct: 61  LIQFEGKFNCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDVLEWGTFQIDG 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQT NDA A+A+N+G    AL++I+EL P+D+I  FHN+ SNL+ +F +PP PY
Sbjct: 121 RSARGGQQTANDAYAKAINAGRKSEALDVIKELAPRDYILHFHNINSNLNMVFQVPPAPY 180

Query: 181 ESRFCLNSFTRV 193
            S F  +SF +V
Sbjct: 181 VSPFLSSSFDQV 192

[Close]

BLAST of Lcy12g000290 vs. ExPASy Swiss-Prot
Match: P36279 (Replication-associated protein OS=Tomato leaf curl virus (strain Australia) OX=223353 GN=C1 PE=1 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.2e-68
Identity = 120/192 (62.50%), Postives = 153/192 (79.69%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           M R K F +NAKNYFLTYPKCSL+K+E L+Q+  ++  +  K++KVCRELH++  PH+HV
Sbjct: 1   MTRPKSFRINAKNYFLTYPKCSLTKEEALSQLNNLETPTSKKYIKVCRELHENGEPHLHV 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           L+QFEGKF+C+N+R FDL SP+ S  FHPNIQGAKSSS+VK+Y++KD DT+EWG FQ+DG
Sbjct: 61  LIQFEGKFQCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLEWGEFQIDG 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQ+ NDA A+ALN+GS   ALN++REL PKD++  FHNL SNLDRIF  P   Y
Sbjct: 121 RSARGGQQSANDAYAQALNTGSKSEALNVLRELAPKDYVLQFHNLNSNLDRIFTPPLEVY 180

Query: 181 ESRFCLNSFTRV 193
            S F  +SF RV
Sbjct: 181 VSPFLSSSFDRV 192

[Close]

BLAST of Lcy12g000290 vs. ExPASy Swiss-Prot
Match: P27260 (Replication-associated protein OS=Tomato yellow leaf curl Sardinia virus OX=123735 GN=C1 PE=1 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.4e-68
Identity = 113/192 (58.85%), Postives = 151/192 (78.65%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           MPR  +F + AKNYFLTYPKC L+K+  L+QI  ++  +   F+K+CRELH++  PH+H+
Sbjct: 1   MPRSGRFSIKAKNYFLTYPKCDLTKENALSQITNLQTPTNKLFIKICRELHENGEPHLHI 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           L+QFEGK+ C N+R FDL SP+ S  FHPNIQGAKSSS+VK+YIDKD D +EWGTFQ+DG
Sbjct: 61  LIQFEGKYNCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDVLEWGTFQIDG 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQT NDA A+A+N+GS   AL++I+EL P+D++  FHN+ SNLD++F +PP PY
Sbjct: 121 RSARGGQQTANDAYAKAINAGSKSQALDVIKELAPRDYVLHFHNINSNLDKVFQVPPAPY 180

Query: 181 ESRFCLNSFTRV 193
            S F  +SF +V
Sbjct: 181 VSPFLSSSFDQV 192

[Close]

BLAST of Lcy12g000290 vs. ExPASy TrEMBL
Match: D4HS99 (Replication-associated protein OS=Sweet potato leaf curl virus OX=100755 GN=Rep PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.9e-71
Identity = 132/198 (66.67%), Postives = 159/198 (80.30%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           MPR  +F +NAKNYFLTYP+CS+SK+E LAQI  I      KF+K+CRELH+D  PH+HV
Sbjct: 1   MPRAGRFNINAKNYFLTYPQCSISKEEALAQIQNIPTAVNKKFIKICRELHEDGQPHLHV 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           LLQFEGKF+C N+RLFDL S + S  FHPNIQ AKSSS+VK+Y+DKD DT+EWG FQVDG
Sbjct: 61  LLQFEGKFQCTNQRLFDLVSQTRSAHFHPNIQRAKSSSDVKSYVDKDGDTLEWGEFQVDG 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQT NDA A ALN+GSA+AAL IIRE LP+DFIF FHNL+SNLDRIF+ PP+ Y
Sbjct: 121 RSARGGQQTANDAAAEALNAGSAEAALQIIREKLPRDFIFQFHNLRSNLDRIFSPPPSVY 180

Query: 181 ESRFCLNSFTRVTRVMLD 199
            S F ++SF  V  ++ D
Sbjct: 181 SSPFSISSFNNVPDIISD 198

[Close]

BLAST of Lcy12g000290 vs. ExPASy TrEMBL
Match: F8LG88 (Replication-associated protein OS=Ageratum leaf curl Cameroon virus [CM:AGFG14:2009] OX=1048736 GN=C1 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.9e-71
Identity = 127/192 (66.15%), Postives = 158/192 (82.29%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           MP Q+KFL+NAKNYFLT+PKCSLSK+E L QIL++   +  K++K+CRELH++  PH+HV
Sbjct: 1   MPTQRKFLINAKNYFLTFPKCSLSKEEALEQILKLNTPTNKKYIKICRELHENGEPHLHV 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           L+QFEGK+KC+N+R FDL SP+ S  FHPNIQGAKSSS+VK+YIDKD DT+EWG FQ+D 
Sbjct: 61  LMQFEGKYKCQNQRFFDLISPNRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDA 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQT NDA ARA+NSGS   ALNI++EL P+DF++GFHNL SNLDRIF  PP  Y
Sbjct: 121 RSARGGQQTANDAYARAINSGSKQEALNILKELAPRDFVYGFHNLNSNLDRIFQAPPEVY 180

Query: 181 ESRFCLNSFTRV 193
            S F  +SF +V
Sbjct: 181 ISPFLSSSFDQV 192

[Close]

BLAST of Lcy12g000290 vs. ExPASy TrEMBL
Match: F8LG82 (Replication-associated protein OS=Ageratum leaf curl Cameroon virus [CM:AGFG24:2009] OX=1048735 GN=C1 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.9e-71
Identity = 127/192 (66.15%), Postives = 158/192 (82.29%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           MP Q+KFL+NAKNYFLT+PKCSLSK+E L QIL++   +  K++K+CRELH++  PH+HV
Sbjct: 1   MPTQRKFLINAKNYFLTFPKCSLSKEEALEQILKLNTPTNKKYIKICRELHENGEPHLHV 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           L+QFEGK+KC+N+R FDL SP+ S  FHPNIQGAKSSS+VK+YIDKD DT+EWG FQ+D 
Sbjct: 61  LMQFEGKYKCQNQRFFDLISPNRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDA 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQT NDA ARA+NSGS   ALNI++EL P+DF++GFHNL SNLDRIF  PP  Y
Sbjct: 121 RSARGGQQTANDAYARAINSGSKQEALNILKELAPRDFVYGFHNLNSNLDRIFQAPPEVY 180

Query: 181 ESRFCLNSFTRV 193
            S F  +SF +V
Sbjct: 181 ISPFLSSSFDQV 192

[Close]

BLAST of Lcy12g000290 vs. ExPASy TrEMBL
Match: A0A5C1D520 (Replication-associated protein OS=Cotton leaf curl Gezira virus OX=222459 GN=C1 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 8.3e-71
Identity = 131/192 (68.23%), Postives = 154/192 (80.21%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           M   K+FL+NAKNYFLT+PKCSL+K+E L Q+ QI   S  K++K+CRELH+D  PH+HV
Sbjct: 1   MAPSKRFLINAKNYFLTFPKCSLTKEEALEQLQQISTASNKKYIKICRELHEDGQPHLHV 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           LLQFEGKFKC+N+RLFDL SPS S  FHPNIQGAKSSS+VK+YIDKD DT+EWG FQ+DG
Sbjct: 61  LLQFEGKFKCQNQRLFDLVSPSRSVHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDG 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQT NDA A ALN+GS   AL +IREL PKDF+  FHNL SNLDRIF  PP PY
Sbjct: 121 RSARGGQQTANDAYAAALNAGSKAQALRVIRELAPKDFVLQFHNLNSNLDRIFQEPPAPY 180

Query: 181 ESRFCLNSFTRV 193
            S F  +SF +V
Sbjct: 181 VSPFLSSSFDQV 192

[Close]

BLAST of Lcy12g000290 vs. ExPASy TrEMBL
Match: A0A5C1D504 (Replication-associated protein OS=Cotton leaf curl Gezira virus OX=222459 GN=C1 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 8.3e-71
Identity = 131/192 (68.23%), Postives = 154/192 (80.21%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           M   K+FL+NAKNYFLT+PKCSL+K+E L Q+ QI   S  K++K+CRELH+D  PH+HV
Sbjct: 1   MAPSKRFLINAKNYFLTFPKCSLTKEEALEQLKQISTASNKKYIKICRELHEDGQPHLHV 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           LLQFEGKFKC+N+RLFDL SPS S  FHPNIQGAKSSS+VK+YIDKD DT+EWG FQ+DG
Sbjct: 61  LLQFEGKFKCQNQRLFDLVSPSRSVHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDG 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQT NDA A ALN+GS   AL +IREL PKDF+  FHNL SNLDRIF  PP PY
Sbjct: 121 RSARGGQQTANDAYAAALNAGSKAEALRVIRELAPKDFVLQFHNLNSNLDRIFQEPPAPY 180

Query: 181 ESRFCLNSFTRV 193
            S F  +SF +V
Sbjct: 181 VSPFLSSSFDQV 192

[Close]

BLAST of Lcy12g000290 vs. NCBI nr
Match: ACY79444.1 (Rep [Sweet potato leaf curl virus])

HSP 1 Score: 278.1 bits (710), Expect = 5.9e-71
Identity = 132/198 (66.67%), Postives = 159/198 (80.30%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           MPR  +F +NAKNYFLTYP+CS+SK+E LAQI  I      KF+K+CRELH+D  PH+HV
Sbjct: 1   MPRAGRFNINAKNYFLTYPQCSISKEEALAQIQNIPTAVNKKFIKICRELHEDGQPHLHV 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           LLQFEGKF+C N+RLFDL S + S  FHPNIQ AKSSS+VK+Y+DKD DT+EWG FQVDG
Sbjct: 61  LLQFEGKFQCTNQRLFDLVSQTRSAHFHPNIQRAKSSSDVKSYVDKDGDTLEWGEFQVDG 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQT NDA A ALN+GSA+AAL IIRE LP+DFIF FHNL+SNLDRIF+ PP+ Y
Sbjct: 121 RSARGGQQTANDAAAEALNAGSAEAALQIIREKLPRDFIFQFHNLRSNLDRIFSPPPSVY 180

Query: 181 ESRFCLNSFTRVTRVMLD 199
            S F ++SF  V  ++ D
Sbjct: 181 SSPFSISSFNNVPDIISD 198

[Close]

BLAST of Lcy12g000290 vs. NCBI nr
Match: CCC14812.1 (replication-associated protein [Ageratum leaf curl Cameroon virus [CM:AGFG24:2009]] >CCC14818.1 replication-associated protein [Ageratum leaf curl Cameroon virus [CM:AGFG14:2009]])

HSP 1 Score: 277.3 bits (708), Expect = 1.0e-70
Identity = 127/192 (66.15%), Postives = 158/192 (82.29%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           MP Q+KFL+NAKNYFLT+PKCSLSK+E L QIL++   +  K++K+CRELH++  PH+HV
Sbjct: 1   MPTQRKFLINAKNYFLTFPKCSLSKEEALEQILKLNTPTNKKYIKICRELHENGEPHLHV 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           L+QFEGK+KC+N+R FDL SP+ S  FHPNIQGAKSSS+VK+YIDKD DT+EWG FQ+D 
Sbjct: 61  LMQFEGKYKCQNQRFFDLISPNRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDA 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQT NDA ARA+NSGS   ALNI++EL P+DF++GFHNL SNLDRIF  PP  Y
Sbjct: 121 RSARGGQQTANDAYARAINSGSKQEALNILKELAPRDFVYGFHNLNSNLDRIFQAPPEVY 180

Query: 181 ESRFCLNSFTRV 193
            S F  +SF +V
Sbjct: 181 ISPFLSSSFDQV 192

[Close]

BLAST of Lcy12g000290 vs. NCBI nr
Match: CBG22951.1 (replication associated protein (Rep) [Cotton leaf curl Gezira virus-[okra:BFA]])

HSP 1 Score: 276.6 bits (706), Expect = 1.7e-70
Identity = 130/192 (67.71%), Postives = 154/192 (80.21%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           MP  K+FL+NAKNYFLT+PKCSL+K+E L Q+ QI   S  K++K+CRELH+D  PH+HV
Sbjct: 1   MPPSKRFLINAKNYFLTFPKCSLTKEEALEQLQQISTASNKKYIKICRELHEDGQPHLHV 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           LLQFEGKFKC+N RLFDL SP+ S  FHPNIQGAKSSS+VK+YIDKD DT+EWG FQ+DG
Sbjct: 61  LLQFEGKFKCQNHRLFDLVSPNRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDG 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQT NDA A ALN+GS   AL +IREL PKDF+  FHNL SNL+RIF  PP PY
Sbjct: 121 RSARGGQQTANDAYAAALNAGSKTEALRVIRELAPKDFVLQFHNLNSNLERIFQEPPPPY 180

Query: 181 ESRFCLNSFTRV 193
            S F  +SF +V
Sbjct: 181 VSPFLSSSFDQV 192

[Close]

BLAST of Lcy12g000290 vs. NCBI nr
Match: QEL50681.1 (replication-associated protein [Cotton leaf curl Gezira virus])

HSP 1 Score: 276.6 bits (706), Expect = 1.7e-70
Identity = 131/192 (68.23%), Postives = 154/192 (80.21%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           M   K+FL+NAKNYFLT+PKCSL+K+E L Q+ QI   S  K++K+CRELH+D  PH+HV
Sbjct: 1   MAPSKRFLINAKNYFLTFPKCSLTKEEALEQLQQISTASNKKYIKICRELHEDGQPHLHV 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           LLQFEGKFKC+N+RLFDL SPS S  FHPNIQGAKSSS+VK+YIDKD DT+EWG FQ+DG
Sbjct: 61  LLQFEGKFKCQNQRLFDLVSPSRSVHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDG 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQT NDA A ALN+GS   AL +IREL PKDF+  FHNL SNLDRIF  PP PY
Sbjct: 121 RSARGGQQTANDAYAAALNAGSKAQALRVIRELAPKDFVLQFHNLNSNLDRIFQEPPAPY 180

Query: 181 ESRFCLNSFTRV 193
            S F  +SF +V
Sbjct: 181 VSPFLSSSFDQV 192

[Close]

BLAST of Lcy12g000290 vs. NCBI nr
Match: QEL50675.1 (replication-associated protein [Cotton leaf curl Gezira virus])

HSP 1 Score: 276.6 bits (706), Expect = 1.7e-70
Identity = 131/192 (68.23%), Postives = 154/192 (80.21%), Query Frame = 0


Query: 1   MPRQKKFLVNAKNYFLTYPKCSLSKDEVLAQILQIKCVSKIKFVKVCRELHQDDNPHIHV 60
           M   K+FL+NAKNYFLT+PKCSL+K+E L Q+ QI   S  K++K+CRELH+D  PH+HV
Sbjct: 1   MAPSKRFLINAKNYFLTFPKCSLTKEEALEQLKQISTASNKKYIKICRELHEDGQPHLHV 60

Query: 61  LLQFEGKFKCRNERLFDLHSPSYSQQFHPNIQGAKSSSNVKAYIDKDRDTIEWGTFQVDG 120
           LLQFEGKFKC+N+RLFDL SPS S  FHPNIQGAKSSS+VK+YIDKD DT+EWG FQ+DG
Sbjct: 61  LLQFEGKFKCQNQRLFDLVSPSRSVHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDG 120

Query: 121 RSSRGGQQTTNDACARALNSGSADAALNIIRELLPKDFIFGFHNLKSNLDRIFAIPPTPY 180
           RS+RGGQQT NDA A ALN+GS   AL +IREL PKDF+  FHNL SNLDRIF  PP PY
Sbjct: 121 RSARGGQQTANDAYAAALNAGSKAEALRVIRELAPKDFVLQFHNLNSNLDRIFQEPPAPY 180

Query: 181 ESRFCLNSFTRV 193
            S F  +SF +V
Sbjct: 181 VSPFLSSSFDQV 192

The following BLAST results are available for this feature:

BLAST of Lcy12g000290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38609	3.0e-70	61.46	Replication-associated protein OS=Tomato yellow leaf curl Sardinia virus (isolat...	[more]
Q82676	3.4e-69	63.54	Replication-associated protein OS=Indian cassava mosaic virus OX=31600 GN=AC1 PE...	[more]
Q67620	7.5e-69	60.42	Replication-associated protein OS=Tomato yellow leaf curl Sardinia virus (isolat...	[more]
P36279	2.2e-68	62.50	Replication-associated protein OS=Tomato leaf curl virus (strain Australia) OX=2...	[more]
P27260	6.4e-68	58.85	Replication-associated protein OS=Tomato yellow leaf curl Sardinia virus OX=1237...	[more]

BLAST of Lcy12g000290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
D4HS99	2.9e-71	66.67	Replication-associated protein OS=Sweet potato leaf curl virus OX=100755 GN=Rep ...	[more]
F8LG88	4.9e-71	66.15	Replication-associated protein OS=Ageratum leaf curl Cameroon virus [CM:AGFG14:2...	[more]
F8LG82	4.9e-71	66.15	Replication-associated protein OS=Ageratum leaf curl Cameroon virus [CM:AGFG24:2...	[more]
A0A5C1D520	8.3e-71	68.23	Replication-associated protein OS=Cotton leaf curl Gezira virus OX=222459 GN=C1 ...	[more]
A0A5C1D504	8.3e-71	68.23	Replication-associated protein OS=Cotton leaf curl Gezira virus OX=222459 GN=C1 ...	[more]

BLAST of Lcy12g000290 vs. NCBI nr


Match Name	E-value	Identity	Description
ACY79444.1	5.9e-71	66.67	Rep [Sweet potato leaf curl virus]	[more]
CCC14812.1	1.0e-70	66.15	replication-associated protein [Ageratum leaf curl Cameroon virus [CM:AGFG24:200...	[more]
CBG22951.1	1.7e-70	67.71	replication associated protein (Rep) [Cotton leaf curl Gezira virus-[okra:BFA]]	[more]
QEL50681.1	1.7e-70	68.23	replication-associated protein [Cotton leaf curl Gezira virus]	[more]
QEL50675.1	1.7e-70	68.23	replication-associated protein [Cotton leaf curl Gezira virus]	[more]

BLAST of Lcy12g000290 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001191	Geminivirus AL1, replication-associated protein	PRINTS	PR00227	GEMCOATAL1	coord: 13..28 score: 65.35 coord: 87..106 score: 75.89 coord: 139..158 score: 47.09 coord: 48..65 score: 61.67
IPR001301	Geminivirus AL1 replication-associated protein, CLV type	PRINTS	PR00228	GEMCOATCLVL1	coord: 59..78 score: 68.77 coord: 7..21 score: 73.92 coord: 21..43 score: 38.67 coord: 87..106 score: 81.93 coord: 43..59 score: 56.14
None	No IPR available	GENE3D	3.40.1310.20		coord: 4..121 e-value: 7.1E-43 score: 147.4
None	No IPR available	PIRSR	PIRSR601191-1	PIRSR601191-1	coord: 2..193 e-value: 7.7E-72 score: 240.0
None	No IPR available	PIRSR	PIRSR601191-2	PIRSR601191-2	coord: 2..193 e-value: 7.7E-72 score: 240.0
None	No IPR available	SUPERFAMILY	55464	Origin of replication-binding domain, RBD-like	coord: 5..121
IPR022692	Geminivirus AL1 replication-associated protein, central domain	PFAM	PF08283	Gemini_AL1_M	coord: 126..198 e-value: 1.8E-16 score: 60.1
IPR022690	Geminivirus AL1 replication-associated protein, catalytic domain	PFAM	PF00799	Gemini_AL1	coord: 7..119 e-value: 6.2E-46 score: 155.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g000290.1	Lcy12g000290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050911	detection of chemical stimulus involved in sensory perception of smell
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0006260	DNA replication
biological_process	GO:0007186	G protein-coupled receptor signaling pathway
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0042048	olfactory behavior
cellular_component	GO:0042025	host cell nucleus
cellular_component	GO:0005887	integral component of plasma membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016888	endodeoxyribonuclease activity, producing 5'-phosphomonoesters
molecular_function	GO:0038022	G protein-coupled olfactory receptor activity
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0005198	structural molecule activity