Lcy11g018770 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g018770
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionclassical arabinogalactan protein 9-like
LocationChr11: 45614327 .. 45615168 (-)
RNA-Seq ExpressionLcy11g018770
SyntenyLcy11g018770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACTGCTTCACTTTCTCTCTCATCCCTTTTCGAGCTATGGCCACCGCACGTGCCATGCTCGTGCTCGCCCTCTCTCTTCTTGCTCTTTCATCCTCCGCCATTGCTCAAGCTCCCTCCCCTGCTCCCGTTCCCCCCGCCGCCGCACCGCCGCCGTCAACCCCACCGCCGATGGCAGCCCCGCCGACTACACCACCCCCTGCTTCCACACCCCCACCGGCAACCTCCCCGCCGCCAAGCATCTCAACTCCACCGATGGCGACTCCTCCCTCAGTCCCACCGATGGCGACTCCTCCCTCAGTCCCGCCGATGGCTTCTCCGCCGACTATGGAATCGAGCCCGAGCCCGAGCCCAGGCCCAATGCCCGACAGCCCACCAGCGCCTCCAGGCCCAAGCCCCAGCCCAAGCCCAGGTCCAACACCCGGGCCAGCTCCGATGCCGCCACCGCCGCCACCGCCGAGCGCGGGATTTTCGATCCAGCACGGCGGGTACAAGGCGGCGGCTCTTGCGGCGGTGCTGGGTGGGCTGGCCGTGGTGGTGGTTTAAGAGCTTAGCAGTTGAATTTGGTGTAGATTATGAGGTCGTATCCAGATTCCATACTCATTTGTGTATTCTTTTTTCTTTCTTTGGTTCCTTTTTCTCTTTTCCTCTCATTTCCATCTCTTTTTCTATCATCTCTTTGATGATTCTTGAGAGCACCATGAGTGATTTGTGGGATATGTAACAGTTATTTGTTTAGCATTTTCATTTTTTTTCTAGCTGAATAAGAGACTTTGTTTCTTCTTGGTGATTTCATACACTATTTTTC

mRNA sequence

CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACTGCTTCACTTTCTCTCTCATCCCTTTTCGAGCTATGGCCACCGCACGTGCCATGCTCGTGCTCGCCCTCTCTCTTCTTGCTCTTTCATCCTCCGCCATTGCTCAAGCTCCCTCCCCTGCTCCCGTTCCCCCCGCCGCCGCACCGCCGCCGTCAACCCCACCGCCGATGGCAGCCCCGCCGACTACACCACCCCCTGCTTCCACACCCCCACCGGCAACCTCCCCGCCGCCAAGCATCTCAACTCCACCGATGGCGACTCCTCCCTCAGTCCCACCGATGGCGACTCCTCCCTCAGTCCCGCCGATGGCTTCTCCGCCGACTATGGAATCGAGCCCGAGCCCGAGCCCAGGCCCAATGCCCGACAGCCCACCAGCGCCTCCAGGCCCAAGCCCCAGCCCAAGCCCAGGTCCAACACCCGGGCCAGCTCCGATGCCGCCACCGCCGCCACCGCCGAGCGCGGGATTTTCGATCCAGCACGGCGGGTACAAGGCGGCGGCTCTTGCGGCGGTGCTGGGTGGGCTGGCCGTGGTGGTGGTTTAAGAGCTTAGCAGTTGAATTTGGTGTAGATTATGAGGTCGTATCCAGATTCCATACTCATTTGTGTATTCTTTTTTCTTTCTTTGGTTCCTTTTTCTCTTTTCCTCTCATTTCCATCTCTTTTTCTATCATCTCTTTGATGATTCTTGAGAGCACCATGAGTGATTTGTGGGATATGTAACAGTTATTTGTTTAGCATTTTCATTTTTTTTCTAGCTGAATAAGAGACTTTGTTTCTTCTTGGTGATTTCATACACTATTTTTC

Coding sequence (CDS)

ATGGCCACCGCACGTGCCATGCTCGTGCTCGCCCTCTCTCTTCTTGCTCTTTCATCCTCCGCCATTGCTCAAGCTCCCTCCCCTGCTCCCGTTCCCCCCGCCGCCGCACCGCCGCCGTCAACCCCACCGCCGATGGCAGCCCCGCCGACTACACCACCCCCTGCTTCCACACCCCCACCGGCAACCTCCCCGCCGCCAAGCATCTCAACTCCACCGATGGCGACTCCTCCCTCAGTCCCACCGATGGCGACTCCTCCCTCAGTCCCGCCGATGGCTTCTCCGCCGACTATGGAATCGAGCCCGAGCCCGAGCCCAGGCCCAATGCCCGACAGCCCACCAGCGCCTCCAGGCCCAAGCCCCAGCCCAAGCCCAGGTCCAACACCCGGGCCAGCTCCGATGCCGCCACCGCCGCCACCGCCGAGCGCGGGATTTTCGATCCAGCACGGCGGGTACAAGGCGGCGGCTCTTGCGGCGGTGCTGGGTGGGCTGGCCGTGGTGGTGGTTTAA

Protein sequence

MATARAMLVLALSLLALSSSAIAQAPSPAPVPPAAAPPPSTPPPMAAPPTTPPPASTPPPATSPPPSISTPPMATPPSVPPMATPPSVPPMASPPTMESSPSPSPGPMPDSPPAPPGPSPSPSPGPTPGPAPMPPPPPPPSAGFSIQHGGYKAAALAAVLGGLAVVVV
Homology
BLAST of Lcy11g018770 vs. ExPASy TrEMBL
Match: A0A6J1E5X6 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111431090 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.5e-39
Identity = 125/168 (74.40%), Postives = 139/168 (82.74%), Query Frame = 0

Query: 1   MATARAMLVLALSLLALSSSAIAQAPSPAPVPPAAAPPPSTPPPMAAPPTTPPPASTPPP 60
           MATARAMLVLALSLL+L++SAIAQ+PSPAP P  AAPPP TPPP+AAPPTTPPP + PP 
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPAVAAPPPLTPPPVAAPPTTPPPTAMPPM 60

Query: 61  ATSPPPSISTPPMATPPSVPPMATPPSVPPMASPPTMESSPSPSPGPMPDSPPAPPGPSP 120
           A SPPPS+STPPMA PP+VP        PPMASPP+MES PSP P  MPDSPP+PPGPSP
Sbjct: 61  AASPPPSMSTPPMAAPPTVP--------PPMASPPSMESGPSPGPSTMPDSPPSPPGPSP 120

Query: 121 SPSPGPTPGPAPMPPPPPPPSAGFSIQHGGYKAAALAAVLGGLAVVVV 169
            P+PGP P  AP PPP PPP AGFSIQHGGYKAA +AAVLGGLA+V+V
Sbjct: 121 GPAPGPAPASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160

BLAST of Lcy11g018770 vs. ExPASy TrEMBL
Match: A0A0A0L458 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.6e-22
Identity = 109/170 (64.12%), Postives = 124/170 (72.94%), Query Frame = 0

Query: 1   MATARAMLVLALSLLALSSSAIAQAPSPAPVPPA-AAPPPSTPPPMAAPPTTPPPASTPP 60
           MA+ARAMLVL LSLL+LSSS+IAQ+PSP+P P + AAPPPSTPPP+A PPTTPPPA+   
Sbjct: 1   MASARAMLVLLLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAA--- 60

Query: 61  PATSPPPSISTPPMATPPSVPPMATPPSVPPMASPPTMESSPSPSPGP-MPDSPPAPPGP 120
              SPP SISTPP A P + PPM        MASPP ME S +P+PGP MP+ PP+PP  
Sbjct: 61  ---SPPSSISTPPAAAPTATPPM--------MASPPPMEPSTAPAPGPAMPEGPPSPPSQ 120

Query: 121 SPSPSPGPTPGPAPMPPPPPPPSAGFSIQHGGYKAAALAAVLGGLAVVVV 169
           SP   PGP P PAP PP   P SAGFSI  GGY  A +AAVLGGLAVV+V
Sbjct: 121 SPMSPPGPAPAPAPTPPSARPRSAGFSIHQGGY-MAGVAAVLGGLAVVLV 155

BLAST of Lcy11g018770 vs. ExPASy TrEMBL
Match: V5LNQ6 (Uncharacterized protein OS=Emiliania huxleyi virus 18 OX=1421424 GN=EhV18_00156 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 67/127 (52.76%), Postives = 76/127 (59.84%), Query Frame = 0

Query: 18  SSSAIAQAPSPAPVPPAAAPPPSTPPPMAAPPTTPPPASTPPPA---TSPPPSISTPPMA 77
           S++ IA  PSP P PP  +PPP +PPP + PP +PPP S PPP+    SPPP    PP  
Sbjct: 217 STTTIAPPPSPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSP 276

Query: 78  TPPSVPPMATPPSVPPMASPPTMESSPSPSPGPMPDSPPAPPGPSPSPSPGPTPGPAPMP 137
            PPS PP + PP  PP  SPP     PSP P P P SPP P  P PSP P   P P+P P
Sbjct: 277 PPPSPPPPSPPPPSPPPPSPPPPSPPPSPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPP 336

Query: 138 PPPPPPS 142
           P PPPPS
Sbjct: 337 PSPPPPS 343

BLAST of Lcy11g018770 vs. ExPASy TrEMBL
Match: A0A1Y5I1S4 (Patched family-domain-containing protein OS=Ostreococcus tauri OX=70448 GN=BE221DRAFT_207925 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.2e-05
Identity = 66/119 (55.46%), Postives = 77/119 (64.71%), Query Frame = 0

Query: 26   PSPAPVPPAAAPPPSTPPPMAAPPTTPPPASTPPPATSPPPSISTPPMATP-PSVPPMAT 85
            P P+P PP + PPP +PPP   PP +PPP+  PPP+  PPPS   PP   P PS PP + 
Sbjct: 905  PPPSPSPPPSPPPPPSPPPPPNPPPSPPPSPPPPPSPPPPPSPPPPPSPPPSPSPPPSSN 964

Query: 86   PP--SVPPMASPPTMESSPSPSPGPMPDSPPAPPGPSPSPSPGPTPGPAPMPPPPPPPS 142
            PP  S PP++SPP +  SP PSP P P SP  PP P PSPSP P P P+P P PPPPPS
Sbjct: 965  PPLSSPPPLSSPPPLSPSPPPSP-PPPPSPSPPPSPPPSPSPPPPPSPSPPPSPPPPPS 1022

BLAST of Lcy11g018770 vs. ExPASy TrEMBL
Match: A0A6P9FB54 (basic proline-rich protein-like OS=Zalophus californianus OX=9704 GN=LOC118356825 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-04
Identity = 71/118 (60.17%), Postives = 75/118 (63.56%), Query Frame = 0

Query: 26  PSPAPVPPAAAP-PPSTPPPMAAPPTTPPPASTPPPATSPPPSISTPPMATPPSVPPMAT 85
           PSP P PP++ P PPSTP P   PP+TPPP S PPP  SPPP  STP    PPS P    
Sbjct: 408 PSPPPPPPSSPPAPPSTPSPPPPPPSTPPPPS-PPPPPSPPPPPSTPSPPAPPSPP---A 467

Query: 86  PPSVPPMASPPTMESSPSPSPGPMPDSPPAPPGPSPSPSPGPTPGP--APMPPPPPPP 141
           PPS PP  SPP+  S PSPSP P P SPP PP P PSP P P P P   P PPPPPPP
Sbjct: 468 PPSPPPPPSPPSTPSPPSPSP-PAPPSPPPPPSPPPSPPPSPPPPPPSTPSPPPPPPP 520

BLAST of Lcy11g018770 vs. NCBI nr
Match: XP_022923372.1 (classical arabinogalactan protein 9-like [Cucurbita moschata])

HSP 1 Score: 171.8 bits (434), Expect = 5.1e-39
Identity = 125/168 (74.40%), Postives = 139/168 (82.74%), Query Frame = 0

Query: 1   MATARAMLVLALSLLALSSSAIAQAPSPAPVPPAAAPPPSTPPPMAAPPTTPPPASTPPP 60
           MATARAMLVLALSLL+L++SAIAQ+PSPAP P  AAPPP TPPP+AAPPTTPPP + PP 
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPAVAAPPPLTPPPVAAPPTTPPPTAMPPM 60

Query: 61  ATSPPPSISTPPMATPPSVPPMATPPSVPPMASPPTMESSPSPSPGPMPDSPPAPPGPSP 120
           A SPPPS+STPPMA PP+VP        PPMASPP+MES PSP P  MPDSPP+PPGPSP
Sbjct: 61  AASPPPSMSTPPMAAPPTVP--------PPMASPPSMESGPSPGPSTMPDSPPSPPGPSP 120

Query: 121 SPSPGPTPGPAPMPPPPPPPSAGFSIQHGGYKAAALAAVLGGLAVVVV 169
            P+PGP P  AP PPP PPP AGFSIQHGGYKAA +AAVLGGLA+V+V
Sbjct: 121 GPAPGPAPASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160

BLAST of Lcy11g018770 vs. NCBI nr
Match: XP_023553563.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-36
Identity = 124/169 (73.37%), Postives = 139/169 (82.25%), Query Frame = 0

Query: 1   MATARAMLVLALSLLALSSSAIAQAPSPAPVPPAAAPPPSTPPPMAAPPTTPPPASTPPP 60
           MATARAMLVLALSLL+L++SAIAQ+PSPAP P  AAPPP TPPP+AAPPTTPPP + PP 
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPAVAAPPPLTPPPVAAPPTTPPPTAMPPM 60

Query: 61  ATSPPPSISTPPMATPPSVPPMATPPSVPPMASPPTMESSPSPSPGPMPDSPPAPPGPSP 120
           A SPPPS+STPPMA PP+V        +PPMASPP+MES PSP P  MPDSPP+PPGPSP
Sbjct: 61  AASPPPSMSTPPMAAPPTV--------LPPMASPPSMESGPSPGPTTMPDSPPSPPGPSP 120

Query: 121 SPSPGPTPGPAPMPPP-PPPPSAGFSIQHGGYKAAALAAVLGGLAVVVV 169
            PS  P+P  AP PPP PPPP AGFSIQHGGYKAA +AAVLGGLA+V+V
Sbjct: 121 GPSSEPSPASAPSPPPSPPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 161

BLAST of Lcy11g018770 vs. NCBI nr
Match: XP_038903480.1 (classical arabinogalactan protein 9-like [Benincasa hispida])

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-31
Identity = 126/172 (73.26%), Postives = 138/172 (80.23%), Query Frame = 0

Query: 1   MATARAMLVLALSLLALSSSAIAQAPSPAPVP-PAAAPPPSTPPPMAAPPTTPPPASTPP 60
           MA+ARAMLVLALSLLAL SS+IAQ+PSPAP P  AAAPPPS+PPP+AAPPTTPPPA+   
Sbjct: 1   MASARAMLVLALSLLALFSSSIAQSPSPAPGPASAAAPPPSSPPPVAAPPTTPPPAA--- 60

Query: 61  PATSPPPSISTPPMATPPSVPPMATPPSVPPMASPPTMESSPSPSPGPMPDSPPAPPGPS 120
              SPPP+ISTPP A PP++PPM        MASPP+MES  SP PGPMPDSPP+PPGPS
Sbjct: 61  ---SPPPTISTPPAAAPPAIPPM--------MASPPSMES--SPGPGPMPDSPPSPPGPS 120

Query: 121 PSP---SPGPTPGPAPMPPPPPPPSAGFSIQHGGYKAAALAAVLGGLAVVVV 169
           PSP   SP PTP PAP PP PPPPSAGFSI  GGYKAAA AAVLGGLAV +V
Sbjct: 121 PSPMSMSP-PTPAPAPSPPSPPPPSAGFSIHQGGYKAAA-AAVLGGLAVFLV 154

BLAST of Lcy11g018770 vs. NCBI nr
Match: AHA54203.1 (hypothetical protein EhV18_00156 [Emiliania huxleyi virus 18])

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-05
Identity = 67/127 (52.76%), Postives = 76/127 (59.84%), Query Frame = 0

Query: 18  SSSAIAQAPSPAPVPPAAAPPPSTPPPMAAPPTTPPPASTPPPA---TSPPPSISTPPMA 77
           S++ IA  PSP P PP  +PPP +PPP + PP +PPP S PPP+    SPPP    PP  
Sbjct: 217 STTTIAPPPSPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSP 276

Query: 78  TPPSVPPMATPPSVPPMASPPTMESSPSPSPGPMPDSPPAPPGPSPSPSPGPTPGPAPMP 137
            PPS PP + PP  PP  SPP     PSP P P P SPP P  P PSP P   P P+P P
Sbjct: 277 PPPSPPPPSPPPPSPPPPSPPPPSPPPSPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPP 336

Query: 138 PPPPPPS 142
           P PPPPS
Sbjct: 337 PSPPPPS 343

BLAST of Lcy11g018770 vs. NCBI nr
Match: XP_041045387.1 (basic proline-rich protein-like, partial [Carcharodon carcharias])

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-05
Identity = 65/121 (53.72%), Postives = 74/121 (61.16%), Query Frame = 0

Query: 23  AQAPSPAPVPPAAAPPPSTPPPM--AAPPTTPPPASTPPPATSPPPSISTPPMATPPSVP 82
           A  P+P P PP  APPP+ PPP    APP  PPP + PPPA  PP   + PP A PP+ P
Sbjct: 127 APPPAPPPAPPPPAPPPTPPPPAPPPAPPPAPPPPAPPPPAPRPP---APPPPAPPPAPP 186

Query: 83  PMATPPSVPPMASPPTMESSPSPSPGPMPDSPPAPPGPSPSPSPGPTPGPAPMPPPPPPP 142
           P A PP  PP A PP     P+P P P P  PPAPP P+P P+P P P PAP PPP PPP
Sbjct: 187 PPAPPPPAPPPAPPPPAPPPPAPPPAPPPAPPPAPPPPAPPPAPPPAPPPAPAPPPAPPP 244

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E5X62.5e-3974.40classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A0A0L4583.6e-2264.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1[more]
V5LNQ64.0e-0552.76Uncharacterized protein OS=Emiliania huxleyi virus 18 OX=1421424 GN=EhV18_00156 ... [more]
A0A1Y5I1S45.2e-0555.46Patched family-domain-containing protein OS=Ostreococcus tauri OX=70448 GN=BE221... [more]
A0A6P9FB542.6e-0460.17basic proline-rich protein-like OS=Zalophus californianus OX=9704 GN=LOC11835682... [more]
Match NameE-valueIdentityDescription
XP_022923372.15.1e-3974.40classical arabinogalactan protein 9-like [Cucurbita moschata][more]
XP_023553563.11.4e-3673.37classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo][more]
XP_038903480.11.7e-3173.26classical arabinogalactan protein 9-like [Benincasa hispida][more]
AHA54203.18.2e-0552.76hypothetical protein EhV18_00156 [Emiliania huxleyi virus 18][more]
XP_041045387.18.2e-0553.72basic proline-rich protein-like, partial [Carcharodon carcharias][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g018770.1Lcy11g018770.1mRNA