Lcy11g018380 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g018380
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	50S ribosomal protein L7/L12
Location	Chr11: 45004164 .. 45006140 (-)
RNA-Seq Expression	Lcy11g018380
Synteny	Lcy11g018380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTATATATATATACTTCAACGTATCCGTATCTTAGTTTTTCAGGAATTGACGTATCGCCGTGTCCGTGTCCGTGCTTCTTAGCTAACGGTTATTGGGCTTTGTCCAATGCTGTTACTTTTACTTAGATGTTCACGATTAGAGCTTCTGATTTGGTTAGTAAAGTTGATTTTGATGAATTTGGTCGACTAGTTTTTTTTTTTTTGAAGAAAATGCTTATAGTTTTGGAGAAAGAGAACCTAATTAAGTGAACTGATCGAGAATCTCGGTTGTGTTAAGGATCAGTTCTCTCATTTGTGCACTATTGGTTCGGTTATCGGTTCTGCTGCTGAAAATTGACTAAACCAAACTGCTATTCACACCTATAAAAAAGTAGTAGTGTCCCATCCGAAAGTTCCCAAGCTAAGCACAATAGGAAAATTATTAGAGCTTGTCCGAGGGTGATAAGAAATTTTTGGGAGTAGAATGTTGTTGAACGGGAGCAATGCCGTTCTGGTAAGACTACCATAGAAATACTTCATGCTCTTGGTTACCTGTTTGGCAGGTTATTTTTGGCTAACCCACCTACAAACATTAAAATCTCTACCTAGGCTCCATCTTCCTTTGATGAGGTTGGAAAAGATTATTAGCTCTTCCTAGAACTGCTTTCTTAGAGTCTAGTAGTTGGATTCAATCTTGAAATTCTATTAATAATAATGGAGAAGATACCAATACCATTAAAAGCTTCCACCATTTTCACTGAGATCTTGCTCTACAGAATAAGAATGTTGGGAGAGGGTCCTTTGCTCGCTTCAAGGGAAGAGTGAAGACCACCCTAAGGTTTTGGAATGCCACAACAATTTGATCAATGGAAGTCGAAAGACGAAGAAGAGCCAGCTTGGTTTCTTGGTGAATAGTAATATAGAACTTAAAGCATGGCTAACTAATAACATTCTGAAATTTTTTTTCTTAAGCTTTTATAAATGTGAATTAACTTTTAATTTTTTCTGCACCATGAGTGAGATATGGAGGGAGTTCAGGATGAAACTGAAATTTTGCTCTCTGGTTTTCATCTATGTTAATCGATGAATTTTTTGTTCTTGATATTTGTTTTCTCAATTTTCAGCTATGTTAATTGATGGTTTTGTTCTTCATGATCTGGGGGAGGGGGAGTGGGAGGGAGGGATGAGATAATAACTCTATAGCTTAACAGCTCAAACTTGTGTTCTACTTCTACAGATATTTGTCTTAGTTTTCGTCTACGTTAAATTAATTGGCCTTAGATTTTTGTATTCCACAGGGATTGTAAATACAATCTTCAAATTTTTGTTCTTAGGTTTTCATCTTTGTTAATTGGCCTTTGATTTTCATGTTCCTCAGAGATGAAATAATTCACTGATTGAATTGAAGAAATAATGAAGCTGATTGCAGTTGCACGATCTGTTCAAGTCCATTCCACACTTCCTAAAATAATTGGGTTGTCACAGGTCCGGTTCTTCCAGCCTGATTTTACCCCCCGAGACCCAAATGCCAAGTCAAAAAGATATAAGTATCCAGCATTTTATGATCCATATGGCCCTAGGCCCTCTCCCTCTGATAAAATCATTCAGCTTGCAGAAAGAATTGTAGCACTGCCTGTGGATGAGCGTTGCCAGATTGGTCCCACACTCTCTGAAAGGCTTAGACATCCTAAGCTGCAGCAAATTTCAGTGGATGGTTTGGACATGGGTTCCGATGGAGGGGCAGCCGCAGGATCTTCTAAGGTGGAGGAGATAAAAGAAAAAACCGCTTTTGACGTGAAGTTAGAGAAGTTTGATGCAGCTGCAAAAATTAAGGTGATTAAAGAAGTAAGGTCTTTCACTAATTTGGGTTTGAAGGAGGCGAAAGATTTAGTGGAGAAAGTACCTGCAATTCTTAAGCAAGGGGTGACCAAAGAGGAGGCAAACGACATCATTGAAAAAATCAAAGCTGCTGGAGGAGTTGCAGTCATGGAGTAA

mRNA sequence

AATTTATATATATATACTTCAACGTATCCGTATCTTAGTTTTTCAGGAATTGACGTATCGCCGTGTCCGTGTCCGTGCTTCTTAGCTAACGGTTATTGGGCTTTGTCCAATGCTGTTACTTTTACTTAGATGTTCACGATTAGAGCTTCTGATTTGAGATGAAATAATTCACTGATTGAATTGAAGAAATAATGAAGCTGATTGCAGTTGCACGATCTGTTCAAGTCCATTCCACACTTCCTAAAATAATTGGGTTGTCACAGGTCCGGTTCTTCCAGCCTGATTTTACCCCCCGAGACCCAAATGCCAAGTCAAAAAGATATAAGTATCCAGCATTTTATGATCCATATGGCCCTAGGCCCTCTCCCTCTGATAAAATCATTCAGCTTGCAGAAAGAATTGTAGCACTGCCTGTGGATGAGCGTTGCCAGATTGGTCCCACACTCTCTGAAAGGCTTAGACATCCTAAGCTGCAGCAAATTTCAGTGGATGGTTTGGACATGGGTTCCGATGGAGGGGCAGCCGCAGGATCTTCTAAGGTGGAGGAGATAAAAGAAAAAACCGCTTTTGACGTGAAGTTAGAGAAGTTTGATGCAGCTGCAAAAATTAAGGTGATTAAAGAAGTAAGGTCTTTCACTAATTTGGGTTTGAAGGAGGCGAAAGATTTAGTGGAGAAAGTACCTGCAATTCTTAAGCAAGGGGTGACCAAAGAGGAGGCAAACGACATCATTGAAAAAATCAAAGCTGCTGGAGGAGTTGCAGTCATGGAGTAA

Coding sequence (CDS)

ATGAAGCTGATTGCAGTTGCACGATCTGTTCAAGTCCATTCCACACTTCCTAAAATAATTGGGTTGTCACAGGTCCGGTTCTTCCAGCCTGATTTTACCCCCCGAGACCCAAATGCCAAGTCAAAAAGATATAAGTATCCAGCATTTTATGATCCATATGGCCCTAGGCCCTCTCCCTCTGATAAAATCATTCAGCTTGCAGAAAGAATTGTAGCACTGCCTGTGGATGAGCGTTGCCAGATTGGTCCCACACTCTCTGAAAGGCTTAGACATCCTAAGCTGCAGCAAATTTCAGTGGATGGTTTGGACATGGGTTCCGATGGAGGGGCAGCCGCAGGATCTTCTAAGGTGGAGGAGATAAAAGAAAAAACCGCTTTTGACGTGAAGTTAGAGAAGTTTGATGCAGCTGCAAAAATTAAGGTGATTAAAGAAGTAAGGTCTTTCACTAATTTGGGTTTGAAGGAGGCGAAAGATTTAGTGGAGAAAGTACCTGCAATTCTTAAGCAAGGGGTGACCAAAGAGGAGGCAAACGACATCATTGAAAAAATCAAAGCTGCTGGAGGAGTTGCAGTCATGGAGTAA

Protein sequence

MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPSDKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEIKEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIKAAGGVAVME

Homology

[Close]

BLAST of Lcy11g018380 vs. ExPASy Swiss-Prot
Match: Q2JM48 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=rplL PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.1e-15
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 0


Query: 59  PSDKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVE 118
           PS+++ ++ E + AL + E  ++   + E              +       AAA ++  E
Sbjct: 2   PSERVAKILEELKALSLLEASELVKAIEETFGVSAAAPAGGMVMAAPVAAAAAAPAAAPE 61

Query: 119 EIKEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEAND 178
            ++E+TAFDV LE   A  KI ++K VR  T LGLK+AKDLVE  P  +K+GV KEEAND
Sbjct: 62  PVEEQTAFDVILEAVPADKKIAILKVVRELTGLGLKDAKDLVEAAPKPVKEGVAKEEAND 121

Query: 179 IIEKIKAAG 188
           I +K++ AG
Sbjct: 122 IKKKLEEAG 130

[Close]

BLAST of Lcy11g018380 vs. ExPASy Swiss-Prot
Match: A2C031 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=167555 GN=rplL PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-14
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 109 GAAAGSSKVEEIKEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILK 168
           GAAAG    +  +EKT F+V LE FDA++KIKV+KEVR+ T LGL EAK LVE  P  +K
Sbjct: 47  GAAAGGDGADAAEEKTEFEVVLESFDASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIK 106

Query: 169 QGVTKEEANDIIEKIKAAGGVAVME 194
           +G TKE+A  + + I+A GG   ++
Sbjct: 107 EGATKEDAEALKKAIEAVGGKVTLK 131

[Close]

BLAST of Lcy11g018380 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-14
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 101 GLDMGSDGGAAAGSSKVEEIKEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLV 160
           G+ M + G     S+  E  +EKT FDV LE FDAAAKIKV+KEVR+ T LGL EAK +V
Sbjct: 40  GVVMAAPGAGGGASAAGEAAEEKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMV 99

Query: 161 EKVPAILKQGVTKEEANDIIEKIKAAGGVAVME 194
           E  P  +K+G +KE+A  + + I+A GG   ++
Sbjct: 100 EAAPKTIKEGASKEDAEALKKAIEAVGGKVTLK 132

[Close]

BLAST of Lcy11g018380 vs. ExPASy Swiss-Prot
Match: P49550 (50S ribosomal protein L12, chloroplastic OS=Trieres chinensis OX=1514140 GN=rpl12 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-14
Identity = 52/134 (38.81%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 60  SDKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEE 119
           S+KI Q+ E +  L + E  ++   + E           VD       G   AG + VEE
Sbjct: 2   SEKIDQIVEELKTLTLLEASELVSKIEE--------TFDVDASASVGGGMMMAGPAVVEE 61

Query: 120 IKEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDI 179
           ++EKT FDV L++  A  KI V+K VRS T LGLKEAK+LVE  P  +++GV K+ A + 
Sbjct: 62  VEEKTEFDVMLDEVPADKKIAVLKVVRSLTGLGLKEAKELVESAPKQIQEGVAKDAAEEA 121

Query: 180 IEKIKAAGGVAVME 194
            ++I+ AGG A ++
Sbjct: 122 KKQIEDAGGKASLK 127

[Close]

BLAST of Lcy11g018380 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-14
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 110 AAAGSSKVEEIKEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQ 169
           A+A       + EKT F+V LE FDA  KI VIKEVR+ T LGLKEAKD VE  P  LK 
Sbjct: 42  ASAAGESAAAVAEKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKT 101

Query: 170 GVTKEEANDIIEKIKAAGGVAVM 193
           GV+K+EA ++ +K++AAG   ++
Sbjct: 102 GVSKDEAEELKKKLEAAGATIIL 124

[Close]

BLAST of Lcy11g018380 vs. ExPASy TrEMBL
Match: A0A6J1DM08 (uncharacterized protein LOC111022207 OS=Momordica charantia OX=3673 GN=LOC111022207 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.3e-89
Identity = 175/193 (90.67%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPS 60
           MKL+AVARS+QVHSTLPK+IG  QVRFFQPDF PRD  AK KRYKYP FYDPYGPRP PS
Sbjct: 1   MKLVAVARSLQVHSTLPKVIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEI 120
           DKIIQLAE+IVALPVDERCQIGP L+ERLRHPKLQ ISVDGLDMGS+GGA AGSSKVEE 
Sbjct: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Lcy11g018380 vs. ExPASy TrEMBL
Match: A0A6J1GD07 (uncharacterized protein LOC111452831 OS=Cucurbita moschata OX=3662 GN=LOC111452831 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 7.3e-88
Identity = 171/193 (88.60%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPS 60
           MK+IAVA+S+Q  STLPKIIGL QVRFFQPDFTPRDPNAK KRYKYP FYDPYGPRP PS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEI 120
           +KIIQLAERI ALPVDERCQIGP L+ERL+HPKL+QISVDG+DMGS GGAA GSSKVEE 
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+AAAKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Lcy11g018380 vs. ExPASy TrEMBL
Match: A0A6J1K6S5 (uncharacterized protein LOC111492812 OS=Cucurbita maxima OX=3661 GN=LOC111492812 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.1e-87
Identity = 168/193 (87.05%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPS 60
           MK+I VA+S+Q  S LPKIIGL QVRFFQPDFTPRDPNAK KRYKYP FYDPYGPRP PS
Sbjct: 1   MKMITVAQSLQARSALPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEI 120
           +KIIQLAERI ALPVDERCQIGP L+ERL+HPKL+QISVDG+D+GS+GGAA GSSKVEE 
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDLGSEGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+AAAKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Lcy11g018380 vs. ExPASy TrEMBL
Match: A0A0A0L907 (Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G623960 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 170/193 (88.08%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 1   MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPS 60
           MKL  VA+S+QV ST  KIIGLSQVRFFQPDFTPRDPNAK K+YKYPAFYDPYGPRP PS
Sbjct: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEI 120
           DKII+LAERIVALP  ERCQIGPTL E+LRHPKLQ+ISVDGLDMG +GGAAAGSS VEE 
Sbjct: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKFDAA+KIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Lcy11g018380 vs. ExPASy TrEMBL
Match: A0A1S3BPI3 (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103492120 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.7e-84
Identity = 168/193 (87.05%), Postives = 175/193 (90.67%), Query Frame = 0


Query: 1   MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPS 60
           MKL  VARS+Q  STL KIIGLSQVRFFQPDFTPRDP AK K+YKYP FYDPYGPRP PS
Sbjct: 1   MKLTVVARSLQARSTLTKIIGLSQVRFFQPDFTPRDPKAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEI 120
           DKII LAERI ALP  ER QIGPTL E+LRHPKLQ+ISVDGLDMGS+GGAAAGSS VEE 
Sbjct: 61  DKIIALAERIAALPAAERSQIGPTLGEKLRHPKLQEISVDGLDMGSEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKFDAA+KIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Lcy11g018380 vs. NCBI nr
Match: XP_022155073.1 (uncharacterized protein LOC111022207 [Momordica charantia] >XP_022155074.1 uncharacterized protein LOC111022207 [Momordica charantia])

HSP 1 Score: 339.0 bits (868), Expect = 2.8e-89
Identity = 175/193 (90.67%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPS 60
           MKL+AVARS+QVHSTLPK+IG  QVRFFQPDF PRD  AK KRYKYP FYDPYGPRP PS
Sbjct: 1   MKLVAVARSLQVHSTLPKVIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEI 120
           DKIIQLAE+IVALPVDERCQIGP L+ERLRHPKLQ ISVDGLDMGS+GGA AGSSKVEE 
Sbjct: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Lcy11g018380 vs. NCBI nr
Match: XP_022949504.1 (uncharacterized protein LOC111452831 [Cucurbita moschata])

HSP 1 Score: 333.2 bits (853), Expect = 1.5e-87
Identity = 171/193 (88.60%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPS 60
           MK+IAVA+S+Q  STLPKIIGL QVRFFQPDFTPRDPNAK KRYKYP FYDPYGPRP PS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEI 120
           +KIIQLAERI ALPVDERCQIGP L+ERL+HPKL+QISVDG+DMGS GGAA GSSKVEE 
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+AAAKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Lcy11g018380 vs. NCBI nr
Match: XP_023525921.1 (uncharacterized protein LOC111789392 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 331.6 bits (849), Expect = 4.4e-87
Identity = 170/193 (88.08%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPS 60
           MK+IAVA+S+Q  STLPKIIG  QVRFFQPDFTPRDPNAK K+YKYP FYDPYGPRP PS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGSLQVRFFQPDFTPRDPNAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEI 120
           +KIIQLAERI ALPVDERCQIGPTL+ERL+HPKL+QISVDG+DMGS GGAA GSSKVEE 
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPTLTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+AAAKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Lcy11g018380 vs. NCBI nr
Match: XP_022998047.1 (uncharacterized protein LOC111492812 [Cucurbita maxima])

HSP 1 Score: 329.7 bits (844), Expect = 1.7e-86
Identity = 168/193 (87.05%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPS 60
           MK+I VA+S+Q  S LPKIIGL QVRFFQPDFTPRDPNAK KRYKYP FYDPYGPRP PS
Sbjct: 1   MKMITVAQSLQARSALPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEI 120
           +KIIQLAERI ALPVDERCQIGP L+ERL+HPKL+QISVDG+D+GS+GGAA GSSKVEE 
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDLGSEGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+AAAKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Lcy11g018380 vs. NCBI nr
Match: XP_011651634.1 (uncharacterized protein LOC101206962 [Cucumis sativus] >XP_011651635.1 uncharacterized protein LOC101206962 [Cucumis sativus] >KGN58328.1 hypothetical protein Csa_017468 [Cucumis sativus])

HSP 1 Score: 329.3 bits (843), Expect = 2.2e-86
Identity = 170/193 (88.08%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 1   MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPS 60
           MKL  VA+S+QV ST  KIIGLSQVRFFQPDFTPRDPNAK K+YKYPAFYDPYGPRP PS
Sbjct: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEI 120
           DKII+LAERIVALP  ERCQIGPTL E+LRHPKLQ+ISVDGLDMG +GGAAAGSS VEE 
Sbjct: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKFDAA+KIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Lcy11g018380 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 226.1 bits (575), Expect = 2.4e-59
Identity = 126/193 (65.28%), Postives = 147/193 (76.17%), Query Frame = 0


Query: 1   MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPS 60
           MKLI++ R+V+     P++I   QVRF Q D   +   AK K+YKYP+ YDPYGPRP PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSVSK---AKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  DKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEI 120
            KI++LAERI AL  +ER QIGP L+E LR PK Q IS DG+    D GA      VEE 
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGA----GNVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+A+ KIKVIKEVR+FT+LGLKEAK+LVEKVPAILKQGVTKEEAN+II
Sbjct: 121 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
            KIKA GG+AVME
Sbjct: 181 AKIKAVGGIAVME 186

[Close]

BLAST of Lcy11g018380 vs. TAIR 10
Match: AT3G06040.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 226.1 bits (575), Expect = 2.4e-59
Identity = 126/193 (65.28%), Postives = 147/193 (76.17%), Query Frame = 0


Query: 1   MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPS 60
           MKLI++ R+V+     P++I   QVRF Q D   +   AK K+YKYP+ YDPYGPRP PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSVSK---AKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  DKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEI 120
            KI++LAERI AL  +ER QIGP L+E LR PK Q IS DG+    D GA      VEE 
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGA----GNVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+A+ KIKVIKEVR+FT+LGLKEAK+LVEKVPAILKQGVTKEEAN+II
Sbjct: 121 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
            KIKA GG+AVME
Sbjct: 181 AKIKAVGGIAVME 186

[Close]

BLAST of Lcy11g018380 vs. TAIR 10
Match: AT3G06040.3 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 226.1 bits (575), Expect = 2.4e-59
Identity = 126/193 (65.28%), Postives = 147/193 (76.17%), Query Frame = 0


Query: 1   MKLIAVARSVQVHSTLPKIIGLSQVRFFQPDFTPRDPNAKSKRYKYPAFYDPYGPRPSPS 60
           MKLI++ R+V+     P++I   QVRF Q D   +   AK K+YKYP+ YDPYGPRP PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSVSK---AKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  DKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISVDGLDMGSDGGAAAGSSKVEEI 120
            KI++LAERI AL  +ER QIGP L+E LR PK Q IS DG+    D GA      VEE 
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGA----GNVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+A+ KIKVIKEVR+FT+LGLKEAK+LVEKVPAILKQGVTKEEAN+II
Sbjct: 121 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
            KIKA GG+AVME
Sbjct: 181 AKIKAVGGIAVME 186

[Close]

BLAST of Lcy11g018380 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 122.5 bits (306), Expect = 3.8e-28
Identity = 70/154 (45.45%), Postives = 101/154 (65.58%), Query Frame = 0


Query: 47  PAFYDPYGPRPSPSDKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISV------D 106
           PA +DP   R  P+D++ +L + I +L + E  ++G  + ++    +L  ++V       
Sbjct: 55  PATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGG 114

Query: 107 GLDMGSDGGAAAGSSKVEEIK-EKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDL 166
           G+ +G  GG  + S   EE K EKT F++KLE F+A+AKIK+IKE+RSFT+LGLKEAK L
Sbjct: 115 GVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKAL 174

Query: 167 VEKVPAILKQGVTKEEANDIIEKIKAAGGVAVME 194
           VEK PAILK G++KEE   I+EK+KA G   V+E
Sbjct: 175 VEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of Lcy11g018380 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 122.5 bits (306), Expect = 3.8e-28
Identity = 70/154 (45.45%), Postives = 101/154 (65.58%), Query Frame = 0


Query: 47  PAFYDPYGPRPSPSDKIIQLAERIVALPVDERCQIGPTLSERLRHPKLQQISV------D 106
           PA +DP   R  P+D++ +L + I +L + E  ++G  + ++    +L  ++V       
Sbjct: 55  PATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGG 114

Query: 107 GLDMGSDGGAAAGSSKVEEIK-EKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDL 166
           G+ +G  GG  + S   EE K EKT F++KLE F+A+AKIK+IKE+RSFT+LGLKEAK L
Sbjct: 115 GVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKAL 174

Query: 167 VEKVPAILKQGVTKEEANDIIEKIKAAGGVAVME 194
           VEK PAILK G++KEE   I+EK+KA G   V+E
Sbjct: 175 VEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

The following BLAST results are available for this feature:

BLAST of Lcy11g018380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2JM48	6.1e-15	38.76	50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=32...	[more]
A2C031	1.4e-14	51.76	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=16755...	[more]
A9BDG4	1.8e-14	48.39	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=930...	[more]
P49550	2.3e-14	38.81	50S ribosomal protein L12, chloroplastic OS=Trieres chinensis OX=1514140 GN=rpl1...	[more]
P41189	2.3e-14	51.81	50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=...	[more]

BLAST of Lcy11g018380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DM08	1.3e-89	90.67	uncharacterized protein LOC111022207 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1GD07	7.3e-88	88.60	uncharacterized protein LOC111452831 OS=Cucurbita moschata OX=3662 GN=LOC1114528...	[more]
A0A6J1K6S5	8.1e-87	87.05	uncharacterized protein LOC111492812 OS=Cucurbita maxima OX=3661 GN=LOC111492812...	[more]
A0A0A0L907	1.1e-86	88.08	Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G6239...	[more]
A0A1S3BPI3	1.7e-84	87.05	50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103492120 PE=4 SV=1	[more]

BLAST of Lcy11g018380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155073.1	2.8e-89	90.67	uncharacterized protein LOC111022207 [Momordica charantia] >XP_022155074.1 uncha...	[more]
XP_022949504.1	1.5e-87	88.60	uncharacterized protein LOC111452831 [Cucurbita moschata]	[more]
XP_023525921.1	4.4e-87	88.08	uncharacterized protein LOC111789392 [Cucurbita pepo subsp. pepo]	[more]
XP_022998047.1	1.7e-86	87.05	uncharacterized protein LOC111492812 [Cucurbita maxima]	[more]
XP_011651634.1	2.2e-86	88.08	uncharacterized protein LOC101206962 [Cucumis sativus] >XP_011651635.1 uncharact...	[more]

BLAST of Lcy11g018380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06040.1	2.4e-59	65.28	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT3G06040.2	2.4e-59	65.28	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT3G06040.3	2.4e-59	65.28	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G70190.1	3.8e-28	45.45	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]
AT1G70190.2	3.8e-28	45.45	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 126..189 e-value: 3.2E-22 score: 78.7
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 119..192 e-value: 6.1E-23 score: 82.7
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 122..192
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..193
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 62..192 e-value: 5.97168E-38 score: 125.346
None	No IPR available	PANTHER	PTHR45987:SF6	RIBOSOMAL PROTEIN L12/ ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS FAMILY PROTEIN	coord: 1..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g018380.1	Lcy11g018380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome