Lcy11g017950 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g017950
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr11: 44047131 .. 44050263 (-)
RNA-Seq ExpressionLcy11g017950
SyntenyLcy11g017950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGTAGGGACTTGTTTAAAAAGGGCATGCGGTGGAGGGTTGGGAACGGGAGGCATATTATAATAGGAGATGACCCTTGGATAGCTGGAGTTAGCGGGTTCAAGCCTGTAGGTATGAAGGATAGCTTCAAGAAGAACTATGTGAGCTCTCTCATTGGTGCTGACAGCAGGTGGTTGGAAGATAAGATCAGAGATATCTTCATTCAATCAGATGTGGAAGCTATTCTGGATATTCCTTTAGGCAACTTACAGGCTAAGGACGACATCATTTGGGGCCATAACTCTAGAGGGAATTTTACTGTCAAAAGGGCTTATTTCCTTGCTCAACTGGGGGTCTCGGAAGAGAGAGTTTCCTCTTCGGACCAATCAGCCTCGAAAGCTTTGTGGAAGGACCTATGGAAGTCAAAAGCTTTACCCAGAGAGAAAAATTGCTCGTGGAAGGCTTTTCAGGACATTCTCCCTACTCAAACTAAAATCATTTCTAAAGGAATTGATATTAATCCCACATGTTTTCTTTGCAGGGATAAAAAGGAATCAAGGAGGTGTAGGGATAAAAACCCTAGCGCAGCGGAAACGTACAGAGACCTTAATCGGTTTAAATGCCGATTGGGAAACCAATACGACGGCAAAACAATTATACAGCAGAAAATTAAAGAATCATGCTGTAAAAATTGAAATAAAACATGCTTAAATAGCCCTAAAAACAATAGATCTAATCTATAAAGAATCCTATTGATCCTAGGGTTCAAGAATACTTACCCTTGAAGTTTTCTTGACAAGATTTCACCAAAATCCTTCGGTTCCACAGAAAAAACAGCAGCCAAGAACTCCTCTTCTTTGCTGGAGAATAATCACGAACACCACCACCACGATTGCACCGGTATTCTCTTAGGTGTGAATGTTGAGTGGCTTGTGGGAACCCAGATCTCTAAGGATTTTTCTCTGAAAAGACACTCTGTATTCACAGAGGGAGAGACGAACGAGAGAGAGGGCGAGAGAGAGGGAAAGAGGCGTGAGTTTGGGGAGTGTCGTCCTCAAAACTGAATATGACCCCTTCAAAAATAACCTCACGCATAATATCAGGTAACTGAAATATCAGTTACCTGATATTTTTAATTAATTATAAATTTAAAAATAATATTTTAAATTATAATTAATTAAATTTTAATTAATCAATATTAATTAAAATAACATTAATTTAAATCTTATTTAAATTAATATCCCTCTTAACCTATAGTTTAATTAAATCAAATTTAATTAAACTAAATCAATTAATTAATTCAAAATTAATTAATTTAAAAATAATAAAATTGAACATCATATATTCAATTATTATTATTCTCTCTCATAAAACTATAGTATTAATATACATCCAATGCACATTAATTATAACCTATAGTTTTAATATGAATCAAATTCATATTTTAGTTTAATATCCGAACCCCTTCGAATACTTAATTTAACCTTAGAAATTTACCTCAACGCCCTTATAGAGCTACCGATGGGACCTGATGGACCTACAGATCAGAAGCTCCAACGATATGAGATTAGTTGGTTAAACTCATTAACCAAGTTAATCAATATTCGTTAACTGTGGTTCACTCCACTAAAGAACCACAGCTGCACTCTTCTCACTGCAGATATATTTCTGTGTCCACGGATATCGACCGTCAACAGCAAGTTAGCCCTTCACGTGTGTTCGTACCCCAGCTAGGTCAAATTACCGTTTTACCCCTGGGCTACCTCTTGGTCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCAGCAAACAGAAATCCCTCTCGTGCCATAAAGAGGGTAGGGCCCATTGTTCAAGACCCGGAGACACCACTTAAGGGAACACACCTCTACTTACCCTAATATCGGGAAGGAGTGAATTCCATCTTGTAAGACTACGTTCCCAGCTCCCCACTCGGTCTTGTCCCCAAAATGGTAGGCTTATTGAGTCGGCGAACAGGCCACTCTCACCCGTACAAATCAAAGGACAATCCCTCATGGACAGGAGTCCATAATCCACTCAGGATTAAGGCCAAGTTGCCTAGGTCATCCTAGTGAAATAGAAACCGAGCTAACTAACGGTGTTACAGTTAGTGGTTAACTATTTCGCGGTCCGGTCTTTGTGCAAACTCATTGCACAGGATACCCCCACTCGCATGTCAACCACATGAACGCGTTGGATCATTACGTTTGTATCAATATACAAAGCGGACCGTATCCATAGTGTCACCAGGACAAGGTACCCAGCCTTATCCCTATACTACAGACCCTTTAGGCTAAAACTTGAACATTGATCCCCGTATGTCCCTACATACTAGTTCAAGCCTCATTCTATTAGCCTTGGATGTTTAGTTTATTGGATTAGGGTTCATAAGACAAGATATAATACAAACATTGAATAATACATCAGTTTTATTAATGTTCGGTCAAATGTACATTTACTATCAACAAGTTTTAGGGCATAAAACCCAACAGGAGGCACATAATATGGGGTTGCAAGGTCTCAGGTAAGATCTGGTCCCACTTCTTCCCCTTCTTATGTATCTCTGATTTGGGTGGCAGGGAGGGAGATGATCCTAAAGCTTGCTGGGAGCAGGCGCGAAAGGTTTTTAACGAAGAAGATCGTGATTTGGCATTTCGGATATTTGGCACATTTGGTCCCTTAGAAACAGGGTTAACCATTCTAAGTCTAAGCTAGATCCTCAAGCGATTATCAGAGAAATCGAAATTTTGCAAGGGAACAGAACGCACCTCACGGAGTTCGGAGCTCCTTCAACCAGATGTGAGAGTCGGTCGAGTCAGGGGTCGTGGAGGCCTCCTCAGCAAGGTTGGTGGAAGATCAACACGGATGCTTCCTGGTCAGATTCCAAAAATGCAGGAGGTATTGGGTGGATTGCTCGTGACTCGGGTGGGTCTTTCATCTTCGCCAGAGGGAAAAAAATTAGCAGAAAGTGGGATATGAAATGCATGGAGTTGAAAGCGATTGTGGAAGGTCTCAGAAGCTTACTAATCAATATTGGTAGGCCTCTCCCGCGGATCCTCATCGAATCAGACTTCTCTGTTGCGATCGCCATTATGAATCATGAAGCTGAATAG

mRNA sequence

ATGTGGGGTAGGGACTTGTTTAAAAAGGGCATGCGGTGGAGGGTTGGGAACGGGAGGCATATTATAATAGGAGATGACCCTTGGATAGCTGGAGTTAGCGGGTTCAAGCCTGTAGGTATGAAGGATAGCTTCAAGAAGAACTATGTGAGCTCTCTCATTGGTGCTGACAGCAGGTGGTTGGAAGATAAGATCAGAGATATCTTCATTCAATCAGATGTGGAAGCTATTCTGGATATTCCTTTAGGCAACTTACAGGCTAAGGACGACATCATTTGGGGCCATAACTCTAGAGGGAATTTTACTGTCAAAAGGGCTTATTTCCTTGCTCAACTGGGGGTCTCGGAAGAGAGAGTTTCCTCTTCGGACCAATCAGCCTCGAAAGCTTTGTGGAAGGACCTATGGAAGTCAAAAGCTTTACCCAGAGAGAAAAATTGCTCGTGGAAGGCTTTTCAGGACATTCTCCCTACTCAAACTAAAATCATTTCTAAAGGAATTGATATTAATCCCACATGGAGGGAGATGATCCTAAAGCTTGCTGGGAGCAGGCGCGAAAGGGTTAACCATTCTAAGTCTAAGCTAGATCCTCAAGCGATTATCAGAGAAATCGAAATTTTGCAAGGGAACAGAACGCACCTCACGGAGTTCGGAGCTCCTTCAACCAGATGTGAGAGTCGGTCGAGTCAGGGGTCGTGGAGGCCTCCTCAGCAAGGTTGGTGGAAGATCAACACGGATGCTTCCTGGTCAGATTCCAAAAATGCAGGAGGTATTGGGTGGATTGCTCGTGACTCGGGTGGGTCTTTCATCTTCGCCAGAGGGAAAAAAATTAGCAGAAAGTGGGATATGAAATGCATGGAGTTGAAAGCGATTGTGGAAGGTCTCAGAAGCTTACTAATCAATATTGGTAGGCCTCTCCCGCGGATCCTCATCGAATCAGACTTCTCTGTTGCGATCGCCATTATGAATCATGAAGCTGAATAG

Coding sequence (CDS)

ATGTGGGGTAGGGACTTGTTTAAAAAGGGCATGCGGTGGAGGGTTGGGAACGGGAGGCATATTATAATAGGAGATGACCCTTGGATAGCTGGAGTTAGCGGGTTCAAGCCTGTAGGTATGAAGGATAGCTTCAAGAAGAACTATGTGAGCTCTCTCATTGGTGCTGACAGCAGGTGGTTGGAAGATAAGATCAGAGATATCTTCATTCAATCAGATGTGGAAGCTATTCTGGATATTCCTTTAGGCAACTTACAGGCTAAGGACGACATCATTTGGGGCCATAACTCTAGAGGGAATTTTACTGTCAAAAGGGCTTATTTCCTTGCTCAACTGGGGGTCTCGGAAGAGAGAGTTTCCTCTTCGGACCAATCAGCCTCGAAAGCTTTGTGGAAGGACCTATGGAAGTCAAAAGCTTTACCCAGAGAGAAAAATTGCTCGTGGAAGGCTTTTCAGGACATTCTCCCTACTCAAACTAAAATCATTTCTAAAGGAATTGATATTAATCCCACATGGAGGGAGATGATCCTAAAGCTTGCTGGGAGCAGGCGCGAAAGGGTTAACCATTCTAAGTCTAAGCTAGATCCTCAAGCGATTATCAGAGAAATCGAAATTTTGCAAGGGAACAGAACGCACCTCACGGAGTTCGGAGCTCCTTCAACCAGATGTGAGAGTCGGTCGAGTCAGGGGTCGTGGAGGCCTCCTCAGCAAGGTTGGTGGAAGATCAACACGGATGCTTCCTGGTCAGATTCCAAAAATGCAGGAGGTATTGGGTGGATTGCTCGTGACTCGGGTGGGTCTTTCATCTTCGCCAGAGGGAAAAAAATTAGCAGAAAGTGGGATATGAAATGCATGGAGTTGAAAGCGATTGTGGAAGGTCTCAGAAGCTTACTAATCAATATTGGTAGGCCTCTCCCGCGGATCCTCATCGAATCAGACTTCTCTGTTGCGATCGCCATTATGAATCATGAAGCTGAATAG

Protein sequence

MWGRDLFKKGMRWRVGNGRHIIIGDDPWIAGVSGFKPVGMKDSFKKNYVSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTVKRAYFLAQLGVSEERVSSSDQSASKALWKDLWKSKALPREKNCSWKAFQDILPTQTKIISKGIDINPTWREMILKLAGSRRERVNHSKSKLDPQAIIREIEILQGNRTHLTEFGAPSTRCESRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPRILIESDFSVAIAIMNHEAE
Homology
BLAST of Lcy11g017950 vs. ExPASy TrEMBL
Match: A0A803PVI9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-29
Identity = 100/363 (27.55%), Postives = 156/363 (42.98%), Query Frame = 0

Query: 1    MWGRDLFKKGMRWRVGNGRHIIIGDDPWIAGVSGFKPVGMKDSFKKNYVSSLIGADSRWL 60
            +WG++L  KG+RW+VG+G++I+   DPWI G + FKP+    +    YVSS I AD RW 
Sbjct: 791  VWGKELLVKGLRWKVGDGQNILFASDPWIPGFTNFKPLQSVVTSTNQYVSSFITADRRWN 850

Query: 61   EDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTVKRAYFLAQLGVSEERVSS 120
             + + D F+ SDVE +L IPL    A D +IW   + G +TVK  Y LA     EE++ +
Sbjct: 851  LELLYDTFLISDVEKVLQIPLSIFPASDQLIWNFETNGAYTVKSGYALAT--SLEEQMPN 910

Query: 121  SDQSASKALWKDLWKSKALPREKNCSWKAFQDILPTQTKIISKGIDINP----------- 180
            +     +  W   W      + +   W+A  D LPT   +  + I  +P           
Sbjct: 911  ASGLQCQTWWNKFWSLTLPSKVRIFLWRAINDCLPTAATLHHRHIADSPICLLCQNARET 970

Query: 181  -------------TWREMILKLAGSRRERVNHSKSKLDPQAIIREIEILQ---------- 240
                          WR+    L+    E +   +  L    +   ++I Q          
Sbjct: 971  TQHALFYCKRPRKIWRDSSFTLSPMISEYMTIKELMLQVSDLWSNLQIEQFITILWLIWN 1030

Query: 241  -------GNRT---HLTEFGAPSTRCESRSSQ--------------------GSWRPPQQ 300
                   G++T   +L E+ A S   + +++Q                     SW  P  
Sbjct: 1031 ERNKEKHGHKTKPYNLLEYSALSYLEDYQAAQRKKPATTPAASHNNLHQKQDASWLHPPT 1090

BLAST of Lcy11g017950 vs. ExPASy TrEMBL
Match: B8BN96 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_37529 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-28
Identity = 102/337 (30.27%), Postives = 149/337 (44.21%), Query Frame = 0

Query: 2    WGRDLFKKGMRWRVGNGRHIIIGDDPWIAGVSGFKPVGMKDSFKKNYVSSLIGADSRWLE 61
            +G DL KKG+ WRVGNG  I I  D W+      +P+  K + +  +VS LI  D  W  
Sbjct: 1370 YGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPITGKANCRLKWVSDLITEDGSWDV 1429

Query: 62   DKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTVKRAYFLAQLGVSEERVSSS 121
             KI   F   D E IL+I + +   +D I W  +  G F+V+ AY LA   V+ E  SSS
Sbjct: 1430 PKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSS 1489

Query: 122  DQSASKALWKDLWKSKALPREKNCSWKAFQDILPTQTKIISKGIDINPTWREMILKLAGS 181
              +     W+ +WK K   + K  +W+   + L T    +         WR   +     
Sbjct: 1490 GTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMAMFLM------TLWRNWYV----- 1549

Query: 182  RRERVNHSKSKLDPQAIIREI--------EILQGNRTHLTE----------FGAPSTRCE 241
             R  + H KS    +   R I        +I Q  +  L +           G P  R  
Sbjct: 1550 -RNELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVRTVPLKGGPKYRV- 1609

Query: 242  SRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKC 301
              + Q  W  P+ GW K+N D S+  S   GG+G I R+S G  IF   K + R  +   
Sbjct: 1610 LNNHQPCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERCNNPLE 1669

Query: 302  MELKAIVEGLRSLLINIGRPLPRILIESDFSVAIAIM 321
             EL+A VEGL+   + I   L  I +E+D +  + ++
Sbjct: 1670 SELRACVEGLK---LAIHWTLLPIQVETDCASVVQLL 1690

BLAST of Lcy11g017950 vs. ExPASy TrEMBL
Match: A0A803NU77 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.9e-28
Identity = 88/299 (29.43%), Postives = 136/299 (45.48%), Query Frame = 0

Query: 1    MWGRDLFKKGMRWRVGNGRHIIIGDDPWIAGVSGFKPVGMKDSFKKNYVSSLIGADSRWL 60
            +WG++L  KG+RW+VG+G  I+   DPWI G++ FKP+    +     VSSLI  + +W 
Sbjct: 1232 VWGKELLLKGLRWKVGDGHSILCVSDPWIPGITNFKPLQSAGTTINQQVSSLITPERQWN 1291

Query: 61   EDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTVKRAYFLAQLGVSEERVSS 120
             + +   F+ SDV+ IL IPL    A D +IW + + G +TVK  Y LA     EE++ +
Sbjct: 1292 LELLHATFLNSDVDKILQIPLTIFPAGDQLIWHYETNGAYTVKSGYALAT--SLEEQLPT 1351

Query: 121  SDQSASKALWKDLWKSKALPREKNCSWKAFQDILPTQTKIISKGIDINPTWREMILKLAG 180
                 S+  W   W      + +   W+A  D LPT   +  +    +P    M L    
Sbjct: 1352 VSGLQSQNWWNKFWSLTLPSKVRIFLWRAINDCLPTAATLHHRHNADSP----MCLLCQN 1411

Query: 181  SRRERVNHSKSKLDPQAIIREIEILQGNRTHLTEFGAPSTRCESRSSQGSWRPPQQGWWK 240
            +  +    + S   P                     A S R   +  + SW  P  G  K
Sbjct: 1412 ANFQAAQKNNSATAP---------------------AVSPRNLQQQQEASWLNPPTGRLK 1471

Query: 241  INTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLIN 300
            +NTDA+ +      G G I R+S G  + A  K +   +  + ME  A++ GL+ L+ N
Sbjct: 1472 LNTDAAINKETQTTGCGAILRNSDGEVVAAFSKPVIGSFRPEVMEALALMYGLQWLIDN 1503

BLAST of Lcy11g017950 vs. ExPASy TrEMBL
Match: A0A7N2L6Z9 (Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.1e-27
Identity = 117/377 (31.03%), Postives = 165/377 (43.77%), Query Frame = 0

Query: 5    DLFKKGMRWRVGNGRHIIIGDDPWIAGVSGFKPVGMKDSFKKNY--VSSLIGADSRWLE- 64
            ++ KKG RWRVGNGR I I DD W+   S +K +       ++Y  VSSLI  D+RW + 
Sbjct: 795  EVLKKGTRWRVGNGRRIHIWDDKWLPSPSTYKVI-TPPRITEDYPMVSSLIDPDTRWWKI 854

Query: 65   DKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTVKRAYFLA-QLGVSEERVSS 124
            D IR +F+  D EAIL IPL      D IIW  N +G F+VK AYF+A  L  S E V  
Sbjct: 855  DSIRALFLPVDAEAILKIPLSFNLPDDRIIWIGNKKGEFSVKSAYFVAVNLLESAEIVEC 914

Query: 125  SDQSASKALWKDLWKSKALPREKNCSWKAFQDILPTQTKIISKGIDIN------------ 184
            S       LWK+LWK     + K  +W+A  + LPT   +  +G++ N            
Sbjct: 915  SSGDPFLPLWKNLWKLDLPEKVKIFAWRACLNGLPTMANMHMRGLNANIFCPVCDEEVEC 974

Query: 185  ---------------PTWREMILKLAGSRRE---RVNHSKSKLDPQ------AIIREIEI 244
                             W++  L L    R+      H  +   P+      AI   I  
Sbjct: 975  LNHCLLTCDFALSVWALWQDCPLGLLLESRDIKALALHFLANSPPRHLLIFFAISWAIWH 1034

Query: 245  LQGNRTHLTEFGAPSTRCE-------------------SRSSQGSWRPPQQGWWKINTDA 304
             +  R H  +  +P    E                    +S+   W  P  G +K+N D 
Sbjct: 1035 NRNLRVHDEDCLSPLQTWEMAQRLIDDYHGAIKLDFPPMQSTLRGWSAPPPGVFKVNVDG 1094

Query: 305  SWS-DSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPL 322
            + S D   + G+G + RD  G  I A  K +   +  +  EL AI +G   LL+     L
Sbjct: 1095 ACSIDPVGSSGVGVVIRDESGMVIAALCKLLPSYFPAEWTELFAIEQG---LLLAQEMDL 1154

BLAST of Lcy11g017950 vs. ExPASy TrEMBL
Match: A0A803QEG9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-26
Identity = 104/396 (26.26%), Postives = 161/396 (40.66%), Query Frame = 0

Query: 2    WGRDLFKKGMRWRVGNGRHIIIGDDPWIAGVSGFKPVGMKDSFKKNYVSSLIGADSRWLE 61
            WGR+L   G+RW++G GR +  G DPW+ G S F P+          V++LI  + +W  
Sbjct: 1423 WGRELLAHGLRWKIGEGRTVRSGFDPWLPGHSSFLPITYSGP-PNGVVANLITDERQWNI 1482

Query: 62   DKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTVKRAYFLAQLGVSEERVSSS 121
              ++  F   D+E IL +PL     +D +IW H+S GNFTV+ AY LA   +  E +SSS
Sbjct: 1483 PLLQQYFCPLDIEKILTLPLSFFPTRDKLIWHHHSSGNFTVQSAYHLA-TSLENEDLSSS 1542

Query: 122  DQSASKALWKDLWKSKALPREKNCSWKAFQDILPTQTKIISKGIDINPT----------- 181
              SA +  WK  W  +   + K  +W+   D LP  T ++ + I  + T           
Sbjct: 1543 STSAVQ-WWKHFWSLQIPQKVKIFAWRVIHDALPVATSLVRRKIITDSTCSICKQAWEST 1602

Query: 182  -------------WREM-----------------------------------ILKLAGSR 241
                         WR                                     I+      
Sbjct: 1603 GHALFGCKYAKAVWRSFHFNFNWSAAISMKNGDYLMYLSSIYNKAEMEELFCIMWAIWGE 1662

Query: 242  RERVNHSKS--KLDPQAIIREI-----------EILQGNRTHLTEFGAPSTRCE----SR 301
            R +V H K+  + +  A+   +            +        T+   PS +      + 
Sbjct: 1663 RNKVVHGKNARRANDLAVFATVFLQNFRAAQHKPVAAATAPAATDVAGPSQQPSKPPAAT 1722

Query: 302  SSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCME 322
            ++  SWRPP    +K+NTDA+  +S N  G+G + RD+ GS   A    I   +    ME
Sbjct: 1723 AALSSWRPPAADCYKLNTDAAAENSSNTIGVGAVLRDASGSVTGALAMPIIGNFKSHEME 1782

BLAST of Lcy11g017950 vs. NCBI nr
Match: XP_030486845.1 (uncharacterized protein LOC115703751 [Cannabis sativa])

HSP 1 Score: 142.1 bits (357), Expect = 8.3e-30
Identity = 99/301 (32.89%), Postives = 137/301 (45.51%), Query Frame = 0

Query: 2    WGRDLFKKGMRWRVGNGRHIIIGDDPWIAGVSGFKPV---GMKDSFKKNYVSSLIGADSR 61
            WG+DL  KG+RW+VG+G+ I+   DPW+ GV+ F+P+   G+ D  K   VSSLI A+  
Sbjct: 925  WGKDLLSKGLRWKVGDGQSILCKSDPWLPGVTNFRPLVLAGIDDHIK---VSSLITAERY 984

Query: 62   WLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTVKRAYFLAQLGVSEERV 121
            W  + +   FI SDVE IL IPL      D +IW H   G +TVK  YF+A     EE+ 
Sbjct: 985  WNLNLLNSYFIPSDVERILSIPLTLTPCSDALIWHHEHNGCYTVKSGYFMAT--NLEEQQ 1044

Query: 122  SSSDQSASKALWKDLWKSKALPREKNCSWKAFQDILPTQTKIISKGIDINPTWREMILKL 181
             S   + S+  WK  W+     + +   W+A  D LP    +  K I  +P     I  L
Sbjct: 1045 PSISGTQSQQWWKKFWRLSLPSKVRIFLWRAINDCLPATAVLHHKHIAQSP-----ICPL 1104

Query: 182  AGSRRERVNH--------------SKSKLDPQAIIREIEILQGNRTHLTEFGAPSTRCES 241
                 E + H              S   LD   + +E +  Q ++        PS    S
Sbjct: 1105 CQRDSESILHALFYCHRPRKIWKDSSFSLDNILLSKEYQSAQKSK------APPSLSSPS 1164

Query: 242  RSS---QGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDM 283
            RS       W  P  G  K+NTDA+   S    G G + RDS G  + A  K I   + +
Sbjct: 1165 RSMTAFDAPWLNPPSGKLKLNTDAAVDKSNQRTGCGAVLRDSNGDIVAAFSKSIPGFFGL 1209

BLAST of Lcy11g017950 vs. NCBI nr
Match: EEC68887.1 (hypothetical protein OsI_37529 [Oryza sativa Indica Group])

HSP 1 Score: 136.7 bits (343), Expect = 3.5e-28
Identity = 102/337 (30.27%), Postives = 149/337 (44.21%), Query Frame = 0

Query: 2    WGRDLFKKGMRWRVGNGRHIIIGDDPWIAGVSGFKPVGMKDSFKKNYVSSLIGADSRWLE 61
            +G DL KKG+ WRVGNG  I I  D W+      +P+  K + +  +VS LI  D  W  
Sbjct: 1370 YGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPITGKANCRLKWVSDLITEDGSWDV 1429

Query: 62   DKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTVKRAYFLAQLGVSEERVSSS 121
             KI   F   D E IL+I + +   +D I W  +  G F+V+ AY LA   V+ E  SSS
Sbjct: 1430 PKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSS 1489

Query: 122  DQSASKALWKDLWKSKALPREKNCSWKAFQDILPTQTKIISKGIDINPTWREMILKLAGS 181
              +     W+ +WK K   + K  +W+   + L T    +         WR   +     
Sbjct: 1490 GTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMAMFLM------TLWRNWYV----- 1549

Query: 182  RRERVNHSKSKLDPQAIIREI--------EILQGNRTHLTE----------FGAPSTRCE 241
             R  + H KS    +   R I        +I Q  +  L +           G P  R  
Sbjct: 1550 -RNELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVRTVPLKGGPKYRV- 1609

Query: 242  SRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKC 301
              + Q  W  P+ GW K+N D S+  S   GG+G I R+S G  IF   K + R  +   
Sbjct: 1610 LNNHQPCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERCNNPLE 1669

Query: 302  MELKAIVEGLRSLLINIGRPLPRILIESDFSVAIAIM 321
             EL+A VEGL+   + I   L  I +E+D +  + ++
Sbjct: 1670 SELRACVEGLK---LAIHWTLLPIQVETDCASVVQLL 1690

BLAST of Lcy11g017950 vs. NCBI nr
Match: KAG8387873.1 (hypothetical protein BUALT_Bualt02G0066800 [Buddleja alternifolia])

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-27
Identity = 101/353 (28.61%), Postives = 164/353 (46.46%), Query Frame = 0

Query: 4   RDLFKKGMRWRVGNGRHIIIGDDPWIAGVSGFKPVGMKDSFKKN-YVSSLIGADSRWLE- 63
           R + K+G RWRVGNG  I I  DPW+   SGFK          N  V+SLI  ++ W + 
Sbjct: 72  RHIVKQGSRWRVGNGEDIAIWFDPWLPSTSGFKITTRNRLLPMNAKVNSLINPNTGWWDS 131

Query: 64  DKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTVKRAYFLAQLGVSEERVSSS 123
           D I  +F   D   I  IPLG+   +D +IW  +S G F V+ AY LA+        SSS
Sbjct: 132 DLIDRVFCPEDASIIKTIPLGSNNNRDRLIWNFSSSGFFAVRSAYHLAKDIDRRRAASSS 191

Query: 124 DQSASKALWKDLWKSKALPREKNCSWKAFQDILPTQTKIISKGIDINPTWR--------- 183
           +       W+ +WK++  P+ +  +WKA +D LPT   ++++ +++    +         
Sbjct: 192 NPKPPSLSWQFIWKTRVPPKIRVFAWKACKDALPTAANLLNRRVEVYAGCQHCESEREDL 251

Query: 184 EMILKLAGSRRE-----RVNHSKSKLDPQAIIREIEILQGNRTHLTEF-----GAPSTRC 243
           + +L+     R+      + H     + + I    ++++ N  H+            T  
Sbjct: 252 QHVLRCCPFSRQLWALMGLPHHTISRNSETIELNQKVMENNNIHMESLITMIQSFHMTAH 311

Query: 244 ESRSSQGS---------WRPPQQGWWKINTD-ASWSDSKNAGGIGWIARDSGGSFIFARG 303
           +   ++G+         W PP  GW KIN D A++S+ K+  G+G IARDS G  +  + 
Sbjct: 312 QIEPNRGAQIIDTTVMHWSPPAPGWLKINFDGANFSEPKSI-GLGVIARDSEGECLHWQR 371

Query: 304 KKISRKWDMKCMELKAIVEGLRSLLINIGRPLPRILIESDFSVAIAIMNHEAE 326
           K +      +  E  A VEGL+   +N  R    +++E D    I  +N  +E
Sbjct: 372 KFLPYHASAEVGEGLACVEGLQLASLNGWR---NVILEGDCLSLIQKINSPSE 420

BLAST of Lcy11g017950 vs. NCBI nr
Match: XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis])

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-26
Identity = 101/386 (26.17%), Postives = 165/386 (42.75%), Query Frame = 0

Query: 1    MWGRDLFKKGMRWRVGNGRHIIIGDDPWIAGVSGFKPVGMKDSFKKNYVSSLIGADSRWL 60
            MWGR + KKGMRWR+GNG+ I I  D W+     F+P+        + V+ LI AD++W 
Sbjct: 947  MWGRQVIKKGMRWRIGNGKKIAIFSDNWLPRPETFRPIFPLSLPVSSVVADLIKADNQWD 1006

Query: 61   EDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTVKRAYFLAQLGVSEERVSS 120
            E K+R  F+  D   IL IPL   +A+D+++W ++ RGN++VK  Y LA    S+   S+
Sbjct: 1007 EIKLRQHFLDVDTAEILKIPLPAEKAEDEVLWHYDKRGNYSVKSGYQLALR--SKFPDST 1066

Query: 121  SDQSASKALWKDLWKSKALPREKNCSWKAFQDILPTQTKIISKGIDINPTWREMILKLAG 180
            S   AS   W  LW  +   + K   W+A  ++LP+   +  + +   PT +   L +  
Sbjct: 1067 SCTEASHKYWSALWTLELPEKLKIFMWRASNNLLPSAENLWKRKVVEEPTCKRCKLSV-- 1126

Query: 181  SRRERVNHS----------------------------------------KSKLDPQAII- 240
               E ++H+                                        KS L+    + 
Sbjct: 1127 ---ETISHALLECKAARKIWLQSPFSAPRLEANSQDIFSTLQNMAKELRKSDLELMVALC 1186

Query: 241  ------REIEILQGNRTH-----------LTEFGAPSTRCES------RSSQGSWRPPQQ 300
                  R   I  G   +           LT F       +S      +  Q  W PP Q
Sbjct: 1187 WSAWYARNKCIFDGRELNPIISAAKAESVLTAFQRVRKPQQSHISISIKEKQQEWLPPPQ 1246

Query: 301  GWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSL 323
              +K+N DA+++    + G+G + RDS G  + A   +   K      E +A++ GL+  
Sbjct: 1247 NVFKVNVDAAFNSKNLSAGVGAVIRDSNGKIVAAGVNQNLLKGSASLAEAEAVLWGLQ-- 1306

BLAST of Lcy11g017950 vs. NCBI nr
Match: XP_023915006.1 (uncharacterized protein LOC112026546 [Quercus suber])

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-26
Identity = 107/375 (28.53%), Postives = 162/375 (43.20%), Query Frame = 0

Query: 5   DLFKKGMRWRVGNGRHIIIGDDPWIAGVSGFKPVGMKDSFKK-NYVSSLIGADSRWLE-D 64
           ++ ++G RWRVGNGR I I DD W+   +  K +  +  F     VSSLI  DS+W + D
Sbjct: 64  EIIRRGTRWRVGNGRRIQIWDDKWLPTPTTHKVISPQSDFGDFPMVSSLIDHDSKWWKVD 123

Query: 65  KIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTVKRAYFLA-QLGVSEERVSSS 124
            +R IF+  + ++IL IPL     +D ++W  N +G+FTVK AY++A  +  S E   SS
Sbjct: 124 VVRSIFLPFEADSILKIPLSYNLPEDCLVWVGNKKGSFTVKSAYYIASSILDSNEDGESS 183

Query: 125 DQSASKALWKDLWKSKALPREKNCSWKAFQDILPTQTKIISKGIDIN------------- 184
             +    LWK +W  K  P+ K  +W+   + LPT   +  +G+  +             
Sbjct: 184 SSNEMTGLWKRIWHQKIPPKLKIFAWRLCVNGLPTMFNLSHRGVHCSCFCPLCDKAIETT 243

Query: 185 --------------PTWREMILKLAGSRRERV--------NHSKSKLDPQAIIREIEILQ 244
                           W      L+   +E V        N S S L+    +       
Sbjct: 244 AHALLHCDHAKLTWAHWHNGFAVLSAGTQEPVDIALDIIKNDSSSALELFIAVAWSIWWN 303

Query: 245 GNRTHLTEFGAPSTR---------------CESR-----SSQGSWRPPQQGWWKINTDAS 304
            N+      GAP ++               C        SS  +WRPP  G+ KIN D +
Sbjct: 304 RNQALHEGSGAPPSQIWDMAIRILGEYKEACSFSNLPLVSSLINWRPPPAGFTKINVDGA 363

Query: 305 WSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPR 322
            SD       G I RDS GS I A  + +S  +     E  A+ +G+  L + +G  L +
Sbjct: 364 ASDDGRPSSTGVIIRDSQGSSIAASCRVLSSPFPADISEALALQDGV-MLALELG--LSK 423

BLAST of Lcy11g017950 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-14
Identity = 49/171 (28.65%), Postives = 85/171 (49.71%), Query Frame = 0

Query: 3   GRDLFKKGMRWRVGNGRHIIIGDDPWIAGVSGFKPVGMKDSFKKNYVSSLI---GADSRW 62
           G  L KKG R  +G+G++I IG D  I      +P+  ++++K+  +++L    G+   W
Sbjct: 30  GIALLKKGTRHLIGDGQNIRIGLDN-IVDSHPPRPLNTEETYKEMTINNLFERKGSYYFW 89

Query: 63  LEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTVKRAYFLAQLGVSEERVS 122
            + KI     QSD   I  I L   +  D IIW +N+ G +TV+  Y+L     S    +
Sbjct: 90  DDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPA 149

Query: 123 SSDQSASKALWKDLWKSKALPREKNCSWKAFQDILPTQTKIISKGIDINPT 171
            +    S  L   +W    +P+ K+  W+A    L T  ++ ++G+ I+P+
Sbjct: 150 INPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPS 199

BLAST of Lcy11g017950 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-09
Identity = 47/165 (28.48%), Postives = 83/165 (50.30%), Query Frame = 0

Query: 168 NPTWRE-------MILKLAGSRRERVNHSKSKLDPQAIIREIEILQGNRTHLTEFGAPST 227
           NP W +       ++ +L  +R E V   + + + Q ++R  E         TE  +  T
Sbjct: 350 NPQWEKASQLVPWLLWRLWKNRNELVFRGR-EFNAQEVLRRAEDDLEEWRIRTEAESCGT 409

Query: 228 RCE-SRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKW 287
           + + +RSS G WRPP   W K NTDA+W+      GIGW+ R+  G   +   + + +  
Sbjct: 410 KPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPK-- 469

Query: 288 DMKCMELKAIVEGLRSLLINIGR-PLPRILIESDFSVAIAIMNHE 324
            +K + L+A +E +R  ++++ R     ++ ESD  V I I+N++
Sbjct: 470 -LKSV-LEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNND 509

BLAST of Lcy11g017950 vs. TAIR 10
Match: AT5G19270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03566.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 9.9e-05
Identity = 33/113 (29.20%), Postives = 51/113 (45.13%), Query Frame = 0

Query: 208 NRTHLTEFGAPSTRCESRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSF 267
           N   +  +GA   R    S   +W PP  G  K N +A W ++    G+ WIARD  G  
Sbjct: 40  NARQIDTYGACFVR--GTSLDLNWTPPDFGIVKCNVNAHWGNADMMSGVAWIARDVNGLA 99

Query: 268 IFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPRILIESDFSVAIAIM 321
           ++      +R  +    EL+ I+  ++SL       L  ++I SD   AIA +
Sbjct: 100 LYHARDAFTRSSNRIMAELRCILWVVKSLR---DLRLQNVIISSDCQAAIAAL 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803PVI92.0e-2927.55Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
B8BN961.7e-2830.27Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX... [more]
A0A803NU774.9e-2829.43Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7N2L6Z97.1e-2731.03Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 ... [more]
A0A803QEG91.6e-2626.26Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_030486845.18.3e-3032.89uncharacterized protein LOC115703751 [Cannabis sativa][more]
EEC68887.13.5e-2830.27hypothetical protein OsI_37529 [Oryza sativa Indica Group][more]
KAG8387873.11.3e-2728.61hypothetical protein BUALT_Bualt02G0066800 [Buddleja alternifolia][more]
XP_024950112.11.5e-2626.17uncharacterized protein LOC112496847 [Citrus sinensis][more]
XP_023915006.15.6e-2628.53uncharacterized protein LOC112026546 [Quercus suber][more]
Match NameE-valueIdentityDescription
AT3G09510.12.3e-1428.65Ribonuclease H-like superfamily protein [more]
AT4G29090.11.7e-0928.48Ribonuclease H-like superfamily protein [more]
AT5G19270.19.9e-0529.20unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 242..323
e-value: 3.6E-8
score: 33.3
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 237..325
e-value: 9.6E-8
score: 34.1
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 8..163
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 8..163
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 241..321
e-value: 6.91132E-13
score: 62.7168
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 237..322

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g017950.1Lcy11g017950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity