Lcy11g017790 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g017790
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr11: 43850296 .. 43853034 (+)
RNA-Seq Expression	Lcy11g017790
Synteny	Lcy11g017790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAACTTCAGACAGTGCTTGGTTGACTGTGAGTTGAGAGATTTGCCCCCTCCTGGAGATCAATTCACTTGGCATGGGAACAGGCGAGGAACCCTCATTTGGGAAAGACTTGATTGGTTCTTATGCAATTCCAGTTTCGATTCCTTGTTCAGTAGTGTGGATACACAAAACCTTGACTGGATATATTCGGATTACAAACCTATCAAAATCAGGGTGGATTCACAACGTCCCAAGCGACAGAGGAAACAGAGGAACCAATTTAAATTTGAGGAATTTTGGACCAACTACAATGAATGTGCGGATCTAATAGCTCAAAATGGGAGTTGGAATGGTGATTTCTTTCCTTTTTCTTCTCTTTCTAATAATTTGCATAGATGTTCTAAGGCTTTATCGAATTGGGGGAGAGATTTAAATAACAAAAGGAAAAATAGAATTAGGGATTGCAAAACAGCCTTGCGAGATGCTTACACTAATATATCCTCTGTAGATTTTGATAGGATTCATGGGATTGAGTTTGAATTGGACAAACTTTTGGAAGAAGAAGAAATATATTGGAAGCAAATGTCTAGGGAGGATTGGCTTAAGTGGGGGGACAAAAACTCTTGCTTGATTAATGGGGAAAAGAAGGGTAGGTTCTATTCTAGTAGGGGTCTCCATCAAGGGGACCCTCTTTCTCCTTATTTGTTTTTAATTGTGACCGAAGGATTGTCTCACTTAATTTCTAGAGCCAACAACAGAGGTAGTATCTCGGGCTTTGTATGCAATAATGGTCCAACTATATCTCACCTTCTATTTGCCGATGATAGCTTAATTTTTTGTAGGGCTGAAGAAAATGAATTGGTAGCCTTAAAAGATCTCATTAATGTCTTTGAATCAGTATCGGGTGAAGCCATTAATTACTCCAAATCAGCTATTCTTTTCTCTCCTAAACTAGATAAAGATAAAAGATGCTTCCTAAGTAATATTCTAGGGGTTAACCAAGTTAATGACTTTGGGAAGTACCTGGGAGTGCCTTCTGTCCTAACTAATACTAAGTCTAGAGATTTCAACTTTGTGCTTGAAAAAATCTGGAAATCAGTGCAAGGGTGGAAAAGATCTTTGTTTTCTATTGGCAGTAAAGATATTTTAATAAAAAGTATAGGACAAGCTATTCCCTCTTATATGATGAGTGTTTTCAAATTTCCAAAAAAACCGTGTGACAGAATCATGAAATGCTAATTCTGGTGGGGTTCTAGTTTAAATAAAAGGAAGCTTCACTGGGTAAAATGGGAGAAATTATGCCTCCCTAAAAGCCTTGGGGGATTGAATTTTAGGGATATAGAAGGTTTTAACAAAGCTCTAATTGCAAAACAAGTATGGAGGCTTCTGTCCAACCCTGAATCTTTAGTCTCTAGATTCCTTAAAAGTTTATATTTTAGTAATTCAAATATCCTTGACTGTGAGCTAGGCAAACATCCATCCTACCTCTAGAAATCTCTTTTATGGGGTAGAGACCTCCTTTCCAAAGGATTGAGATTCAGAATAGGAAATGGAGTGAATACCTCTATGTTCAATGACCCTTGGCTCCCTAAGGAAACCTCTTTTAAGCCTATATGTATTAATAATGCTTTGATAGATAGTAAGGTGGCTGAATTCATAACTCCTTCAGGGGTCTGGGATTTAGATAAAATTAAGAGGGTTGTTGTCTATTTTGATATTGATTCTGTCAGGAGTATCCTAATTCATAAAGACCTCAATGATAAACTAATGTGGCACTATGATAGGACGAGAGAGTATTCTGTTAAAAGCAGTTATAAACTTTTTATGAAAATCAAACTAGATGGAATTTCTTCTAGTTCATCTTCTATGAGTCATGTCTGGAATAATTTGTGGAAATTAAAAATCCCCTCCAAAATTAAACACTTCTGCTGGAAAGCCCTAAATGACTCTATTCCTAATAAGATGAATCTATATCGAAGAGGAATAGGGAATGAGACTACCTGTCTTATGTGTAATTTTCCCTATGAAAATTCGGATCATACTCTGTTTGAATGTAATCGAGCTAAAGAATTATGGAGGAGTACTTACAATAATGTGTTTCTTGATGTAGATTTCAATGGGAGCTTTGTTGACAGATGAATCCAGATCAATTCGGTAGCATCTCAAGAGGATCTCGGGCTTGTCGTTGTCACTTGTTGGGCGCTTTGGATCGACAGGAACAAAATTGTCCACAACGAGGATATTCCCTTGATTAATCAAAGAAGCCAGTGGATTAGGAAGTATCTAGATTCCTATTTGAAAGCACATGAGAAATGTTCTTCAAGACTTACCGGACACAATGGAGTGAATCGTCCTCCGAAAAATCGTTTTGCATGTTGGTCTCCTCCCCCAGCAAGCTTCTGGAAAGTAAACACCGATGCAGCTTGTGATTCTAATTCTCCTTCAATGGGACGGGGCATGATCGGTAGAGATGATAAGGGTGATATTTTGTTCTCTTCTTCTCTTTGGGTCGACTTCCAAATGAACCCCCTTTTGGCTGAACTTTCAAGCATTTACCAAGGAGTGAAGAAAGCAAAGGAAATGGGTTGCTCTAAGCTCATTATTGAATCCGACTGCCAGCTCGCTATTAATTTTTTGTCAAAGAAATCTCCTGTCTGGAGTGACCTGGAGGCTTTGGGTAAATCCATTTGGAGTCTTGCATCTTCCTTCAGGGGGCGTTTGGCCCATAGTCTAGGGTTGGAATGGTTTTGGGTTTGA

mRNA sequence

ATGGATAACTTCAGACAGTGCTTGGTTGACTGTGAGTTGAGAGATTTGCCCCCTCCTGGAGATCAATTCACTTGGCATGGGAACAGGCGAGGAACCCTCATTTGGGAAAGACTTGATTGGTTCTTATGCAATTCCAGTTTCGATTCCTTGTTCAGTAGTGTGGATACACAAAACCTTGACTGGATATATTCGGATTACAAACCTATCAAAATCAGGGTGGATTCACAACGTCCCAAGCGACAGAGGAAACAGAGGAACCAATTTAAATTTGAGGAATTTTGGACCAACTACAATGAATCATCTCAAGAGGATCTCGGGCTTGTCGTTGTCACTTGTTGGGCGCTTTGGATCGACAGGAACAAAATTGTCCACAACGAGGATATTCCCTTGATTAATCAAAGAAGCCAGTGGATTAGGAAGTATCTAGATTCCTATTTGAAAGCACATGAGAAATGTTCTTCAAGACTTACCGGACACAATGGAGTGAATCGTCCTCCGAAAAATCGTTTTGCATGTTGGTCTCCTCCCCCAGCAAGCTTCTGGAAAGTAAACACCGATGCAGCTTGTGATTCTAATTCTCCTTCAATGGGACGGGGCATGATCGGTAGAGATGATAAGGGTGATATTTTGTTCTCTTCTTCTCTTTGGGTCGACTTCCAAATGAACCCCCTTTTGGCTGAACTTTCAAGCATTTACCAAGGAGTGAAGAAAGCAAAGGAAATGGGTTGCTCTAAGCTCATTATTGAATCCGACTGCCAGCTCGCTATTAATTTTTTGTCAAAGAAATCTCCTGTCTGGAGTGACCTGGAGGCTTTGGGTAAATCCATTTGGAGTCTTGCATCTTCCTTCAGGGGGCGTTTGGCCCATAGTCTAGGGTTGGAATGGTTTTGGGTTTGA

Coding sequence (CDS)

ATGGATAACTTCAGACAGTGCTTGGTTGACTGTGAGTTGAGAGATTTGCCCCCTCCTGGAGATCAATTCACTTGGCATGGGAACAGGCGAGGAACCCTCATTTGGGAAAGACTTGATTGGTTCTTATGCAATTCCAGTTTCGATTCCTTGTTCAGTAGTGTGGATACACAAAACCTTGACTGGATATATTCGGATTACAAACCTATCAAAATCAGGGTGGATTCACAACGTCCCAAGCGACAGAGGAAACAGAGGAACCAATTTAAATTTGAGGAATTTTGGACCAACTACAATGAATCATCTCAAGAGGATCTCGGGCTTGTCGTTGTCACTTGTTGGGCGCTTTGGATCGACAGGAACAAAATTGTCCACAACGAGGATATTCCCTTGATTAATCAAAGAAGCCAGTGGATTAGGAAGTATCTAGATTCCTATTTGAAAGCACATGAGAAATGTTCTTCAAGACTTACCGGACACAATGGAGTGAATCGTCCTCCGAAAAATCGTTTTGCATGTTGGTCTCCTCCCCCAGCAAGCTTCTGGAAAGTAAACACCGATGCAGCTTGTGATTCTAATTCTCCTTCAATGGGACGGGGCATGATCGGTAGAGATGATAAGGGTGATATTTTGTTCTCTTCTTCTCTTTGGGTCGACTTCCAAATGAACCCCCTTTTGGCTGAACTTTCAAGCATTTACCAAGGAGTGAAGAAAGCAAAGGAAATGGGTTGCTCTAAGCTCATTATTGAATCCGACTGCCAGCTCGCTATTAATTTTTTGTCAAAGAAATCTCCTGTCTGGAGTGACCTGGAGGCTTTGGGTAAATCCATTTGGAGTCTTGCATCTTCCTTCAGGGGGCGTTTGGCCCATAGTCTAGGGTTGGAATGGTTTTGGGTTTGA

Protein sequence

MDNFRQCLVDCELRDLPPPGDQFTWHGNRRGTLIWERLDWFLCNSSFDSLFSSVDTQNLDWIYSDYKPIKIRVDSQRPKRQRKQRNQFKFEEFWTNYNESSQEDLGLVVVTCWALWIDRNKIVHNEDIPLINQRSQWIRKYLDSYLKAHEKCSSRLTGHNGVNRPPKNRFACWSPPPASFWKVNTDAACDSNSPSMGRGMIGRDDKGDILFSSSLWVDFQMNPLLAELSSIYQGVKKAKEMGCSKLIIESDCQLAINFLSKKSPVWSDLEALGKSIWSLASSFRGRLAHSLGLEWFWV

Homology

[Close]

BLAST of Lcy11g017790 vs. ExPASy TrEMBL
Match: A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-20
Identity = 65/191 (34.03%), Postives = 96/191 (50.26%), Query Frame = 0


Query: 90  FEEFW-TNYNESSQEDLGLVVVTCWALWIDRNKIVHNEDIPLINQRSQWIRKYLDSYLKA 149
           F + W   Y++ + +   L   T WA+W DRN   H   +     R  WI  Y  +Y +A
Sbjct: 36  FMDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQA 95

Query: 150 HEKCSSRLTGHNGVNRPPKNRFACWSPPPASFWKVNTDAACDSNSPSMGRGMIGRDDKGD 209
            E  + R++       PP  R   W PP  S  KVN+DAAC   S S G G+I RD  G 
Sbjct: 96  QE--NKRISPQQSSVPPPSCR---WLPPRDSAMKVNSDAAC--RSTSTGLGLIIRDHFGV 155

Query: 210 ILFSSSLWVDFQMNPLLAELSSIYQGVKKAKEMGCSKLIIESDCQLAINFLSKKSPVWSD 269
           +L + S+++   +NPL AE+  I + +K A     ++L++ESDCQ AI        V  D
Sbjct: 156 LLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRL------VQGD 213

Query: 270 LEALGKSIWSL 280
           L ++G+ +  L
Sbjct: 216 LFSMGEELIGL 213

[Close]

BLAST of Lcy11g017790 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.1e-17
Identity = 62/199 (31.16%), Postives = 99/199 (49.75%), Query Frame = 0


Query: 86   NQFKFEEFWTNYNESSQ-EDLGLVVVTCWALWIDRNKIVHNEDIPLINQRSQWIRKYLDS 145
            +   F E W++  E  + +DL L  +T W +W DRN ++H + +  +  + +W+  +LDS
Sbjct: 1211 DNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDS 1270

Query: 146  YLKAHEKCSSRLTGHNGVNRPPKNRFACWSPPPASFWKVNTDAACDSNSPSMGRGMIGRD 205
            + +A     S  T  N  +RP       W P  +   K+NTDAAC   S S   G I RD
Sbjct: 1271 HSQAQMSNYSPRTQSN--HRPV---VQYWRPSSSVSLKLNTDAACRGASTSF--GCIIRD 1330

Query: 206  DKGDILFSSSLWVDFQMNPLLAELSSIYQGVKKAKEMGCSKLIIESDCQLAINFLSKKSP 265
                ++ ++S+ V F ++PLLAE+  I +G+K A     + L +ESD  LAI  +  +  
Sbjct: 1331 SSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIH 1390

Query: 266  VWSDLEALGKSIWSLASSF 284
               D +     I +L   F
Sbjct: 1391 TRGDEQNWVMEIQALTCCF 1402

[Close]

BLAST of Lcy11g017790 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-15
Identity = 59/188 (31.38%), Postives = 96/188 (51.06%), Query Frame = 0


Query: 101 SQEDLGLVVVTCWALWIDRNKIVHNEDIPLINQRSQWIRKYLDSYLKAHEKCSSRLTGHN 160
           S  +L L  +TCWALW DR+ +++ + IP    + +WI KY +           R+  HN
Sbjct: 5   STSELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKYAEEV---------RMKYHN 64

Query: 161 GVNR--PPKNRFACWSPPPASFWKVNTDAACDSNSPSMGRGMIGRDDKGDILFSSSLWVD 220
           G+ R  P  N    W PP     K+NTDAA   +    G G++ R+   +I+      VD
Sbjct: 65  GMKRRIPRVNE---WRPPLGGVVKMNTDAAV--SEEGSGVGVLLREGNAEIV---GAMVD 124

Query: 221 FQM--NPLLAELSSIYQGVKKAKEMGCSKLIIESDCQLAINFLSKKSPVWSDLEALGKSI 280
           F M   PLLA++ +I +G+  A  +G  ++++E+D   A+N +  KSP   +  +  + I
Sbjct: 125 FHMVKTPLLAKILAIREGLSLATRLGVHRVVVETDSLEALNLIGDKSPWKGEAVSWVEDI 175

Query: 281 WSLASSFR 285
            + A  F+
Sbjct: 185 RAFARDFQ 175

[Close]

BLAST of Lcy11g017790 vs. ExPASy TrEMBL
Match: A0A0D2MPE5 (RNase H domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_003G154500 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.8e-14
Identity = 55/195 (28.21%), Postives = 98/195 (50.26%), Query Frame = 0


Query: 90  FEEFWTNYNESSQED-LGLVVVTCWALWIDRNKIVHNEDIPLINQRSQWIRKYLDSYLKA 149
           F E+ +   E+S+++  GL+VV+ WA+W  RNK VH  ++  + +   +IR +   Y  +
Sbjct: 4   FNEWLSWLLENSEKNRKGLIVVSIWAIWFSRNKFVHERNVQSLEEIVTFIRSFGLEYRSS 63

Query: 150 HEKCSSRLTGHNGVNRPPKNRFACWSPPPASFWKVNTDAACDSNSPSMGRGMIGRDDKGD 209
            E           +  P       WSPPP  ++K+N DA     +     G I R+ +G 
Sbjct: 64  AE----------SLKHPQPRSMVKWSPPPQGYFKINVDAGLSVANNRAVLGFIIRNAEGF 123

Query: 210 ILFSSSLWVDFQMNPLLAELSSIYQGVKKAKEMGCSKLIIESDCQLAINFLSKKSPVWSD 269
           I+  + +      + ++AE  ++  G++ A +MG SK+I+ESD +L +N + K S  +S+
Sbjct: 124 IMGHNLV-----HSMVIAEAIAVLDGLQFALDMGFSKVILESDSRLVVNNIQKSSEDYSE 183

Query: 270 LEALGKSIWSLASSF 284
                  + +LA  F
Sbjct: 184 SRPFTWDVKNLARKF 183

[Close]

BLAST of Lcy11g017790 vs. ExPASy TrEMBL
Match: A0A7J9D462 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021255 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-13
Identity = 53/196 (27.04%), Postives = 93/196 (47.45%), Query Frame = 0


Query: 96  NYNE--------SSQEDLGLVVVTCWALWIDRNKIVHNEDIPLINQRSQWIRKYLDSYLK 155
           N+NE        S++    L+ V+ WA+W  RNK VH   +  + +   +I  +   Y  
Sbjct: 94  NFNEWLSWLLKNSAKNRKWLIAVSIWAIWFSRNKFVHERKVQSLEEIVTFIWSFGSEYRS 153

Query: 156 AHEKCSSRLTGHNGVNRPPKNRFACWSPPPASFWKVNTDAACDSNSPSMGRGMIGRDDKG 215
           + E           +  P       WSPPP  ++KVN DA     +  +    I R+D+G
Sbjct: 154 SAE----------SLKHPQPRSMVKWSPPPQGWFKVNVDAGVSIANNRVVTDFIIRNDEG 213

Query: 216 DILFSSSLWVDFQMNPLLAELSSIYQGVKKAKEMGCSKLIIESDCQLAINFLSKKSPVWS 275
            I+ S     +  ++ ++AE  ++  G++ A +MG S++I+ESD +L +N + K S  +S
Sbjct: 214 FIMGSGFQRHNLVLSVVIAEAIAVLHGLQFALDMGFSRVILESDSRLVVNNIQKSSEDYS 273

Query: 276 DLEALGKSIWSLASSF 284
           +       + +LA  F
Sbjct: 274 ESRPFTWDVKNLARKF 279

[Close]

BLAST of Lcy11g017790 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 109.0 bits (271), Expect = 7.2e-20
Identity = 65/191 (34.03%), Postives = 96/191 (50.26%), Query Frame = 0


Query: 90  FEEFW-TNYNESSQEDLGLVVVTCWALWIDRNKIVHNEDIPLINQRSQWIRKYLDSYLKA 149
           F + W   Y++ + +   L   T WA+W DRN   H   +     R  WI  Y  +Y +A
Sbjct: 36  FMDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQA 95

Query: 150 HEKCSSRLTGHNGVNRPPKNRFACWSPPPASFWKVNTDAACDSNSPSMGRGMIGRDDKGD 209
            E  + R++       PP  R   W PP  S  KVN+DAAC   S S G G+I RD  G 
Sbjct: 96  QE--NKRISPQQSSVPPPSCR---WLPPRDSAMKVNSDAAC--RSTSTGLGLIIRDHFGV 155

Query: 210 ILFSSSLWVDFQMNPLLAELSSIYQGVKKAKEMGCSKLIIESDCQLAINFLSKKSPVWSD 269
           +L + S+++   +NPL AE+  I + +K A     ++L++ESDCQ AI        V  D
Sbjct: 156 LLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRL------VQGD 213

Query: 270 LEALGKSIWSL 280
           L ++G+ +  L
Sbjct: 216 LFSMGEELIGL 213

[Close]

BLAST of Lcy11g017790 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-16
Identity = 62/199 (31.16%), Postives = 99/199 (49.75%), Query Frame = 0


Query: 86   NQFKFEEFWTNYNESSQ-EDLGLVVVTCWALWIDRNKIVHNEDIPLINQRSQWIRKYLDS 145
            +   F E W++  E  + +DL L  +T W +W DRN ++H + +  +  + +W+  +LDS
Sbjct: 1211 DNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDS 1270

Query: 146  YLKAHEKCSSRLTGHNGVNRPPKNRFACWSPPPASFWKVNTDAACDSNSPSMGRGMIGRD 205
            + +A     S  T  N  +RP       W P  +   K+NTDAAC   S S   G I RD
Sbjct: 1271 HSQAQMSNYSPRTQSN--HRPV---VQYWRPSSSVSLKLNTDAACRGASTSF--GCIIRD 1330

Query: 206  DKGDILFSSSLWVDFQMNPLLAELSSIYQGVKKAKEMGCSKLIIESDCQLAINFLSKKSP 265
                ++ ++S+ V F ++PLLAE+  I +G+K A     + L +ESD  LAI  +  +  
Sbjct: 1331 SSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIH 1390

Query: 266  VWSDLEALGKSIWSLASSF 284
               D +     I +L   F
Sbjct: 1391 TRGDEQNWVMEIQALTCCF 1402

[Close]

BLAST of Lcy11g017790 vs. NCBI nr
Match: XP_012852581.1 (PREDICTED: uncharacterized protein LOC105972189 [Erythranthe guttata])

HSP 1 Score: 93.6 bits (231), Expect = 3.1e-15
Identity = 59/185 (31.89%), Postives = 85/185 (45.95%), Query Frame = 0


Query: 99  ESSQEDLGLVVVTCWALWIDRNKIVHNEDIPLINQRSQWIRKYLDSYLKAHEKCSSRLTG 158
           E   + L L +V CW LW  RNKI+H ED   +     W   YL +Y  A  +       
Sbjct: 33  ELDPDKLHLAIVVCWKLWERRNKIIHQEDFINLEDMVGWCAAYLRTYDDAQLQ------- 92

Query: 159 HNGVNRPPKNRFACWSPPPASFWKVNTDAACDSNSPSMGRGMIGRDDKGDILFSSSLWVD 218
           HN V RP  ++   W+PPP    K+N DAA   NS      +I R+  G  ++     V 
Sbjct: 93  HNNVRRPEFSQ--TWTPPPIGVLKLNVDAAFPPNSEFHRVSLIARNATGTCVWWQVRRVL 152

Query: 219 FQMNPLLAELSSIYQGVKKAKEMGCSKLIIESDCQLAINFLSKKSPVWSDLEALGKSIWS 278
             ++P   E  +I Q ++ AK    + + +ESDC L I  L K+ P      A+ +  +S
Sbjct: 153 GMVSPSEGEAHAILQALRTAKFRQWNAITVESDCLLVIEALQKREPSLQSYGAIVEECFS 208

Query: 279 LASSF 284
             S F
Sbjct: 213 YLSCF 208

[Close]

BLAST of Lcy11g017790 vs. NCBI nr
Match: XP_022158489.1 (uncharacterized protein LOC111024968 [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-14
Identity = 59/188 (31.38%), Postives = 96/188 (51.06%), Query Frame = 0


Query: 101 SQEDLGLVVVTCWALWIDRNKIVHNEDIPLINQRSQWIRKYLDSYLKAHEKCSSRLTGHN 160
           S  +L L  +TCWALW DR+ +++ + IP    + +WI KY +           R+  HN
Sbjct: 5   STSELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKYAEEV---------RMKYHN 64

Query: 161 GVNR--PPKNRFACWSPPPASFWKVNTDAACDSNSPSMGRGMIGRDDKGDILFSSSLWVD 220
           G+ R  P  N    W PP     K+NTDAA   +    G G++ R+   +I+      VD
Sbjct: 65  GMKRRIPRVNE---WRPPLGGVVKMNTDAAV--SEEGSGVGVLLREGNAEIV---GAMVD 124

Query: 221 FQM--NPLLAELSSIYQGVKKAKEMGCSKLIIESDCQLAINFLSKKSPVWSDLEALGKSI 280
           F M   PLLA++ +I +G+  A  +G  ++++E+D   A+N +  KSP   +  +  + I
Sbjct: 125 FHMVKTPLLAKILAIREGLSLATRLGVHRVVVETDSLEALNLIGDKSPWKGEAVSWVEDI 175

Query: 281 WSLASSFR 285
            + A  F+
Sbjct: 185 RAFARDFQ 175

[Close]

BLAST of Lcy11g017790 vs. NCBI nr
Match: XP_030942039.1 (uncharacterized protein LOC115967096 [Quercus lobata])

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-14
Identity = 47/183 (25.68%), Postives = 89/183 (48.63%), Query Frame = 0


Query: 102 QEDLGLVVVTCWALWIDRNKIVHNEDIPLINQRSQWIRKYLDSYLKAHEKCSSRLTGHNG 161
           +E+  L  +TCW +W  RN ++H       ++ +Q    YL  Y  A +     +  H  
Sbjct: 60  EEEWNLFWITCWLIWHQRNTVIHGGVFQHPSRSAQRAVDYLKEYTDAQDSLHVPIPNHGP 119

Query: 162 VNRPPKNRFACWSPPPASFWKVNTDAACDSNSPSMGRGMIGRDDKGDILFSSSLWVDFQM 221
           V +        W PPP +F+K+N D AC     + G G + R++KG+++ + +       
Sbjct: 120 VQQ-------TWQPPPETFFKLNFDGACFDEGAASGYGAVIRNEKGEVMAALAARGGAVR 179

Query: 222 NPLLAELSSIYQGVKKAKEMGCSKLIIESDCQLAINFLSKKSPVWSDLEALGKSIWSLAS 281
           +    E+ +  + ++ A + G +++++E D  L +  +S+  P  S L  + + IW LA+
Sbjct: 180 DSEEVEVMACRKALEFAIDAGFTEIVLEGDNALVMKMISQAQPDLSRLGLIYEDIWCLAA 235

Query: 282 SFR 285
            FR
Sbjct: 240 GFR 235

[Close]

BLAST of Lcy11g017790 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-09
Identity = 49/182 (26.92%), Postives = 77/182 (42.31%), Query Frame = 0


Query: 107 LVVVTCWALWIDRNKIV---HNEDIPLINQRSQWIRKYLDSYLKAHEKCSSR--LTGHNG 166
           LV    W LW  RN+++      D P + +R+          ++  E+ S+R  L G   
Sbjct: 76  LVPWLLWRLWKSRNELMFKGKEYDAPEVLRRA----------MEDFEEWSTRRELEGKAS 135

Query: 167 VNRPPKNRFACWSPPPASFWKVNTDAACDSNSPSMGRGMIGRDDKGDILFSSSLWVDFQM 226
             +  +N    W  PP  + K NTDA     +P  G G I R++ G +L+  +  +    
Sbjct: 136 GPQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTK 195

Query: 227 NPLLAELSSIYQGVKKAKEMGCSKLIIESDCQLAINFLSKKSPVWSDLEALGKSIWSLAS 284
           N L AEL ++   V         ++I ESD Q  +N L+     W  L+   + I  L  
Sbjct: 196 NVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLN-SDDFWPTLQPALEDIQQLLH 246

[Close]

BLAST of Lcy11g017790 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.6e-04
Identity = 28/91 (30.77%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 1   MDNFRQCLVDCELRDLPPPGDQFTWHGNRRGTLIWERLDWFLCNSS-FDSLFSSVDTQNL 60
           ++ F+ CL D +L D+P  G  +TW  ++    I  +LD  + N   F S  S++    L
Sbjct: 249 LEEFQNCLRDSDLVDIPSRGVHYTWSNHQDDNPIIRKLDRAIANGDWFSSFPSAIAVFEL 308

Query: 61  DWIYSDYKPIKIRVDSQRPKRQRKQRNQFKF 91
             + SD+ P  I +++  PKR +K    F F
Sbjct: 309 SGV-SDHSPCIIILEN-LPKRSKKCFRYFSF 337

The following BLAST results are available for this feature:

BLAST of Lcy11g017790 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g017790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQ49	3.5e-20	34.03	uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A6J1DX30	6.1e-17	31.16	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DZK3	5.7e-15	31.38	uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A0D2MPE5	4.8e-14	28.21	RNase H domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_003G15...	[more]
A0A7J9D462	1.1e-13	27.04	Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021255 PE=4 ...	[more]

BLAST of Lcy11g017790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131661.1	7.2e-20	34.03	uncharacterized protein LOC111004786 [Momordica charantia]	[more]
XP_022158377.1	1.3e-16	31.16	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_012852581.1	3.1e-15	31.89	PREDICTED: uncharacterized protein LOC105972189 [Erythranthe guttata]	[more]
XP_022158489.1	1.2e-14	31.38	uncharacterized protein LOC111024968 [Momordica charantia]	[more]
XP_030942039.1	3.4e-14	25.68	uncharacterized protein LOC115967096 [Quercus lobata]	[more]

BLAST of Lcy11g017790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34320.1	1.2e-09	26.92	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G43760.1	2.6e-04	30.77	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 1..73 e-value: 2.3E-6 score: 29.5
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 2..72
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 184..284 e-value: 2.2E-13 score: 50.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 180..297 e-value: 2.7E-12 score: 48.9
None	No IPR available	PANTHER	PTHR47074:SF37	PROTEIN, PUTATIVE-RELATED	coord: 168..289
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 168..289
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 183..284 e-value: 1.13833E-16 score: 72.732
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 179..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g017790.1	Lcy11g017790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity