Lcy11g017480 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g017480
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase
Location	Chr11: 43397511 .. 43400470 (+)
RNA-Seq Expression	Lcy11g017480
Synteny	Lcy11g017480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGGATTATCTCTGGGTATTTTCGGGACTTATTTAGCTCGAATGGTAGCCATAACAGTGGAAGGCTCGAAGAGTTCCTAAGGAATATTGCCCTTTGTGTTAGCATGGAGGCAAATGAGAGATTGGGCAGACCGTATACAGAGGAGGATCTTGTGGTGTCTCTAAAACAAATGGGCCCTCTGAAGGCCCCTGGAGAGGATGGTTTCCCAGCTCTGTTCTACCAAAGGTATTGGGAAATTGTTGGAAAAGAGGTATCCTCGATATGTTTGGAGGTGCTGAATAATGGAGGGTCGGTGGAGGCATTAAACCAAACGGTTATTTCTTTGATTCCAAAATGTAGAAATGCTCGAAGGATCTCAAATTTTAGGCCAATAAGCCTTTGCAATGTGGTTTATAAAATAATCTTGAAATCCATTACTAATAGGCTTAAAGAGGTATTGGATCAAGTAATCTCTCCAACTCAGAGTGCCTTTGTCCCTAGAAGGAATATTTGTGATAATGCCATATTGGGCTTCGAGAGTCTCCACTACATGAAACAAAAGAAAAAAGGGAAGGCGGGCTGGGCGACCTTGAAACTTGACATGAGCAAGGCATATGTTCGGGTGGAGTGGTTCTTCCTAGAGAAGTTTATGTTGGCGCTGGGTGTTGGCAGGAAGGTGGTAGATCTGATTATGGGGTGTGTTAAAACAGTCTCATATTCTTTTATGCTGAATGGGAAGCGAAGAATAAGAATTATCCCATCCAGGGGGCTTCGCCAAGGTGACCCAATCTCTCCTTATTTATTCTTGTTTAGTGCTGAGGGCTTGTCTAGAATGCTTTCATGGTTAGAGGCGGATAGGAAGTTGACTGGAGTCCGATTAGCTCGTGGCTGCCCCCCCATATCGCATTTATTTTTTGCTGATGACTGCCTCTTGTTCTTTAAGGCAGACATGCGAGAAGCCAGGATGGTGTTGAACACGCTGAGGACTTATTCAGTTATCACAGGGCAAGAGATTAATTATGGTAAGTCCGGGATTTATTTCAGTCCTAATGTTAGAGATGATATTCGAGTAGGTATTGCTAACCTTCTCCAGGTGACTTTGGTAGGATCTCATGAGCGGTATCATGGTTTGCCTGTGGGTTTTGTTGGTGGAAGGATAGAGGCCTTGAGACAAACCAAGGACCGAATTTGGTCCCAGATTCAGAGATGGAAACACAGGTGCTTTTCTGTAGGAGGAAAGGAGGTTCTGATAAAGGCTGTCCTACAGGCCATCCCTACTTATACTATGTCATGCTTTAGGTTCCCGAAGGGGTTGGTTAAGGAGTGTAATAGTATGATGGCTAGATTTTGGTGGGGAATGGAGGATGGTAAAAGGAAGGTGCATTGGGCATCTTGGAGGAAGGTATGTGTTTCTAAATTTTATGGAGGGTTAGGCTTTCGAGACCTTGAACTGTTTAACAAAGCATTACTAGCAAAACAATGTTGGAGATTGATCGAAAACCCGAATTCTTTATTGGCTAGGGTTCTTAAAGGGAGATATTTCAACCATGGTTCCTTTTTGGATGCTAAGCTTAAGAATAATAACTCTTATATATGGAAGAGCTTGTTGCTAGAGGTGGGGCTTAGATGGAGAGTGGGGGATGGGAACTCAATTAGAATTGCATTTGATAATTGGATTCCTAGGCCCCCATCTCTTCAGATTATCCATAAGGCTGATATCCATCCTGGGGCGAGGGTGGTTAGTTTATTGACTCCTGGTGGCCTGTGGAATGAGGGACTTGTCCGGTCAATGTTTGGGGAAAATGATGCTATGGCTATCTTGGGCATTCCAAGGCCTAGGATGAGACAAGCTGATAAGATTATGTGGCACTATGAAAATGATGGGAGATATTTTGTAAGTAGCGGATATAAACTGGCTTGTGGGATTAGGGAGGAAGCTAGTAGCTCTAATTCGGAGGATGTTCATAAATGGTGGAAGTTTGTATGGGTCTGTCGGATTCCGAGTAAGGTTAATATCTTCGTGTGGAGATTGTTTCATGATCTTCTCCCAACTGAAAGCAATTTGAGAAAAAGAGGAATGGAAGTGCCGAGGGGGTGTGCTCGATGCGAGGTATGAGGAGTCGACTTTCCATGCTATATGGGAGTGCAAAGGATCAAAGAAATATTGGAGAGACACTCCTTTCTTTCCCCGGCCTGGGCCTACGTCTGTTGGGAGTCCAACGGATCTGCTATGGTGGTGTTGGAAAGGTATGACAGGGGAAGTTTTTGAAGATTTTGTGGCTATGTGTTGGTGGGTGTGGAGCAGGAGGAATAAGGAATTGTTTGGGGAAGCTGCTTTAGGTGAGGAGGGGGAGTATGGGTGGCGTTGGGTTGCTGATTACCTAACCCATTTTAGGGCCTTTCATCGCAGGAAGGATGGAACTAAGGTGAGGGGGTGAATTAGAATCTGAGTGTTGGAGTCCACCTGAGTTCCCTTATTTCAAGCTAAATACAGACATAGCAGTGGATAAAAAGCGTAATCTCAGCAGCATTGGGGCAATTGTTCGAAATGAGAAAGGGGAGGTGATGCTTACCTTGATGAGGTTGGTTGAGTTTGTGCTTGAGGTGGATGTGTTGGAGGCGTTGGCGATTCGCGAAGGGCTGGCGGCTGCTGTTGATGCCGGCTTCTCGCAGGTGATGGTGTAATCGGATTCGGCGAGAGTGGTGTGCCAGATTGATTTTGTACAGAGTGACCGATCAGAGATGGGGTTTCTGATTGAGGAGATTATAAGCATTTCTCGTGATCTGAGGACTTGCTCGTTCAGGTGATGTTGTCGGGCAAGAAACAAGCTGGCACATGAAGTTGCAAGAGCAGCGTTGAGGCTGCGGATGGAAGGTACTTGGCTGGAGGAGGTGCCGTCGGTGGTCGAAGGCTGCTACTCTGCTGAGCTGAGGACTTCTGCGTTGGATTCTAGGGCATTCTGTGATGTTCCGTAG

mRNA sequence

ATGGAGGGGATTATCTCTGGGTATTTTCGGGACTTATTTAGCTCGAATGGTAGCCATAACAGTGGAAGGCTCGAAGAGTTCCTAAGGAATATTGCCCTTTGTGTTAGCATGGAGGCAAATGAGAGATTGGGCAGACCGTATACAGAGGAGGATCTTGTGGTGTCTCTAAAACAAATGGGCCCTCTGAAGGCCCCTGGAGAGGATGGTTTCCCAGCTCTGTTCTACCAAAGGTATTGGGAAATTGTTGGAAAAGAGGTATCCTCGATATGTTTGGAGGTGCTGAATAATGGAGGGTCGGTGGAGGCATTAAACCAAACGATTATCCATAAGGCTGATATCCATCCTGGGGCGAGGGTGGTTAGTTTATTGACTCCTGGTGGCCTGTGGAATGAGGGACTTGTCCGGTCAATGTTTGGGGAAAATGATGCTATGGCTATCTTGGGCATTCCAAGGCCTAGGATGAGACAAGCTGATAAGATTATGTGGCACTATGAAAATGATGGGAGATATTTTGTAAGTAGCGGATATAAACTGGCTTGTGGGATTAGGGAGGAAGCTAGTAGCTCTAATTCGGAGGATGTTCATAAATGGTGGAAGTTTGTATGGGTCTGTCGGATTCCGAACATAGCAGTGGATAAAAAGCGTAATCTCAGCAGCATTGGGGCAATTGTTCGAAATGAGAAAGGGGAGGTGATGCTTACCTTGATGAGGTTGGTTGAGTTTGTGCTTGAGGTGGATGTGTTGGAGGCGTTGGCGATTCGCGAAGGGCTGGCGGCTGCTGTTGATGCCGGCTTCTCGCAGGTGATGGTAAACAAGCTGGCACATGAAGTTGCAAGAGCAGCGTTGAGGCTGCGGATGGAAGGTACTTGGCTGGAGGAGGTGCCGTCGGTGGTCGAAGGCTGCTACTCTGCTGAGCTGAGGACTTCTGCGTTGGATTCTAGGGCATTCTGTGATGTTCCGTAG

Coding sequence (CDS)

ATGGAGGGGATTATCTCTGGGTATTTTCGGGACTTATTTAGCTCGAATGGTAGCCATAACAGTGGAAGGCTCGAAGAGTTCCTAAGGAATATTGCCCTTTGTGTTAGCATGGAGGCAAATGAGAGATTGGGCAGACCGTATACAGAGGAGGATCTTGTGGTGTCTCTAAAACAAATGGGCCCTCTGAAGGCCCCTGGAGAGGATGGTTTCCCAGCTCTGTTCTACCAAAGGTATTGGGAAATTGTTGGAAAAGAGGTATCCTCGATATGTTTGGAGGTGCTGAATAATGGAGGGTCGGTGGAGGCATTAAACCAAACGATTATCCATAAGGCTGATATCCATCCTGGGGCGAGGGTGGTTAGTTTATTGACTCCTGGTGGCCTGTGGAATGAGGGACTTGTCCGGTCAATGTTTGGGGAAAATGATGCTATGGCTATCTTGGGCATTCCAAGGCCTAGGATGAGACAAGCTGATAAGATTATGTGGCACTATGAAAATGATGGGAGATATTTTGTAAGTAGCGGATATAAACTGGCTTGTGGGATTAGGGAGGAAGCTAGTAGCTCTAATTCGGAGGATGTTCATAAATGGTGGAAGTTTGTATGGGTCTGTCGGATTCCGAACATAGCAGTGGATAAAAAGCGTAATCTCAGCAGCATTGGGGCAATTGTTCGAAATGAGAAAGGGGAGGTGATGCTTACCTTGATGAGGTTGGTTGAGTTTGTGCTTGAGGTGGATGTGTTGGAGGCGTTGGCGATTCGCGAAGGGCTGGCGGCTGCTGTTGATGCCGGCTTCTCGCAGGTGATGGTAAACAAGCTGGCACATGAAGTTGCAAGAGCAGCGTTGAGGCTGCGGATGGAAGGTACTTGGCTGGAGGAGGTGCCGTCGGTGGTCGAAGGCTGCTACTCTGCTGAGCTGAGGACTTCTGCGTTGGATTCTAGGGCATTCTGTGATGTTCCGTAG

Protein sequence

MEGIISGYFRDLFSSNGSHNSGRLEEFLRNIALCVSMEANERLGRPYTEEDLVVSLKQMGPLKAPGEDGFPALFYQRYWEIVGKEVSSICLEVLNNGGSVEALNQTIIHKADIHPGARVVSLLTPGGLWNEGLVRSMFGENDAMAILGIPRPRMRQADKIMWHYENDGRYFVSSGYKLACGIREEASSSNSEDVHKWWKFVWVCRIPNIAVDKKRNLSSIGAIVRNEKGEVMLTLMRLVEFVLEVDVLEALAIREGLAAAVDAGFSQVMVNKLAHEVARAALRLRMEGTWLEEVPSVVEGCYSAELRTSALDSRAFCDVP

Homology

[Close]

BLAST of Lcy11g017480 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.1e-04
Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 5   ISGYFRDLFSSNGSHNSGRLEEFLRNIAL-CVSMEANERLGRPYTEEDLVVSLKQMGPLK 64
           I  Y++ L+ +N   N   ++ FL    L  ++ E  E L RP T  ++V  +  +   K
Sbjct: 411 IREYYKHLY-ANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKK 470

Query: 65  APGEDGFPALFYQRYWE 81
           +PG DGF A FYQRY E
Sbjct: 471 SPGPDGFTAEFYQRYKE 486

[Close]

BLAST of Lcy11g017480 vs. ExPASy TrEMBL
Match: A0A803PR89 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-24
Identity = 76/235 (32.34%), Postives = 114/235 (48.51%), Query Frame = 0


Query: 12  LFSSNGSHNSGRLEEFLRNIALCVSMEANERLGRPYTEEDLVVSLKQMGPLKAPGEDGFP 71
           ++  +G HN+         +   V++E N      +T E++V ++KQM P KAPG+DG P
Sbjct: 661 MWLESGDHNTRFFHRKASALPPKVTLEINRDSVPLFTMEEVVSAVKQMNPAKAPGKDGLP 720

Query: 72  ALFYQRYWEIVGKEVSSICLEVLNNGGSVEALNQTIIHKADI-----HPGARVVS--LLT 131
           ALFYQR+W  V   V ++CL +LNN   V+ LN T++ K D+     H   RV+   +L 
Sbjct: 721 ALFYQRFWPKVKDNVIAVCLNILNNDAPVDCLNDTVVLKLDMAKAYDHVEWRVLKAMMLR 780

Query: 132 PG-------GLWNEGLVR------------------------SMFGENDAMAILGIPRPR 191
            G       G W     R                        S+F  +DA  ILGIP   
Sbjct: 781 LGYNCAWQCGSWPWTTTRRPLSPFLFLFCAEALTSLIVHEENSVFNCDDAEMILGIPTNE 840

Query: 192 MRQADKIMWHYENDGRYFVSSGYKLACGIREEASSSNSEDVHKWWKFVWVCRIPN 209
               +KIMWHY  +G Y V S + LA  + E+ + S++  + + WK +W  +IP+
Sbjct: 841 ASIENKIMWHYSRNGEYSVHSRFHLASVMLEKEAQSDNTRMTERWKCMWKRKIPS 895

[Close]

BLAST of Lcy11g017480 vs. ExPASy TrEMBL
Match: A0A803QQP1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-22
Identity = 66/236 (27.97%), Postives = 109/236 (46.19%), Query Frame = 0


Query: 4   IISGYFRDLFSSNGSHNSGRLEEFLRNIALCVSMEANERLGRPYTEEDLVVSLKQMGPLK 63
           ++  YFR++++++G  N   L+     +   ++   N  + +P+T  D+  +LK M    
Sbjct: 758 VVQSYFRNIYTTDGVDNEA-LQSVFSKVPCTITESDNRAITQPFTAADIYEALKSMNSDG 817

Query: 64  APGEDG---FPALFYQRYWEIVGKEVSSICLEVLNNGGSVEALNQTI----------IHK 123
           + G DG      +FY  YW IVG  V+   L+VLN GG   + NQT+          I+ 
Sbjct: 818 SLGIDGMFVMFVMFYTNYWGIVGDLVTRSVLKVLNEGGDPTSFNQTLITLIPKVKKPINM 877

Query: 124 ADIHP------------------GARVVSLLTPGGLWNEGLVRSMFGENDAMAILGIPRP 183
             + P                     V  LLT    W+  L++S+F  +D   IL IP  
Sbjct: 878 TQLRPISLCFTYFKPLLFKGDDRTITVSDLLTDDNRWDIPLLQSLFLASDVEKILSIPLS 937

Query: 184 RMRQADKIMWHYENDGRYFVSSGYKLACGIREEASSSNSEDVHKWWKFVWVCRIPN 209
              + + ++WH+E DG Y V  GYK+A  + E+  ++++     WWK  W   IP+
Sbjct: 938 PFHRTNHLIWHHEMDGCYTVKLGYKMALSLEEQQPNTSTSPAISWWKKFWSLSIPS 992

[Close]

BLAST of Lcy11g017480 vs. ExPASy TrEMBL
Match: A0A5B6X8X5 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_033272 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-20
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 8   YFRDLFSSNGSHNSGRLEEFLRNIALCVSMEANERLGRPYTEEDLVVSLKQMGPLKAPGE 67
           YF +LF++NG  N   L E L  +   +S+EANE L  P++E++++ +LK MGP KAPG 
Sbjct: 201 YFENLFNTNGVAN---LREVLEGVEESISVEANEDLLAPFSEDEVLTALKGMGPTKAPGP 260

Query: 68  DGFPALFYQRYWEIVGKEVSSICLEVLNNGGSVEALNQTII 109
           DGFPA+F+Q+YW IVGKEV   CL VLN G  V++ N T I
Sbjct: 261 DGFPAIFFQKYWHIVGKEVLGFCLGVLNEGKEVDSANMTNI 298

[Close]

BLAST of Lcy11g017480 vs. ExPASy TrEMBL
Match: A0A5B6V9D8 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_000890 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-20
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 8   YFRDLFSSNGSHNSGRLEEFLRNIALCVSMEANERLGRPYTEEDLVVSLKQMGPLKAPGE 67
           YF  LF++NG  N     E L  I   +S+EANE L  P++E+++  +LK MGP+KAPG 
Sbjct: 271 YFEKLFNTNGVANP---REVLEGIEESISIEANEYLLAPFSEDEVKTTLKGMGPIKAPGP 330

Query: 68  DGFPALFYQRYWEIVGKEVSSICLEVLNNGGSVEALNQTII 109
           DGFPA+F+Q+YW IVGKEV   CL VLN G  V+++N T I
Sbjct: 331 DGFPAIFFQKYWHIVGKEVLGFCLRVLNEGKEVDSVNMTNI 368

[Close]

BLAST of Lcy11g017480 vs. ExPASy TrEMBL
Match: A0A5B6VH75 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_014434 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.9e-20
Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 8   YFRDLFSSNGSHNSGRLEEFLRNIALCVSMEANERLGRPYTEEDLVVSLKQMGPLKAPGE 67
           YF +LF+S+G  N     E L  I   +S+E N+RL  P+TEE+++++LK MGP KAPG 
Sbjct: 323 YFENLFTSHGITNP---SEILEGIERSISVEVNDRLQAPFTEEEVILALKGMGPTKAPGP 382

Query: 68  DGFPALFYQRYWEIVGKEVSSICLEVLNNGGSVEALNQT------IIHKADIHPGARVVS 125
           DGFP +F+Q+YW I+GKEV   CL VLN    V+ +N T       IHK       R +S
Sbjct: 383 DGFPTIFFQKYWHIMGKEVLGYCLGVLNEEREVDTVNTTNIVLIPKIHKPTSLVNFRPIS 442

[Close]

BLAST of Lcy11g017480 vs. NCBI nr
Match: KAF7134615.1 (hypothetical protein RHSIM_Rhsim08G0178900 [Rhododendron simsii])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-22
Identity = 64/207 (30.92%), Postives = 104/207 (50.24%), Query Frame = 0


Query: 4   IISGYFRDLFSSNGSHNSGRLEEFLRNIALCVSMEANERLGRPYTEEDLVVSLKQMGPLK 63
           +I  YF  LF   G  +     E L N+  C+S + N +L    + E++  +  Q+G LK
Sbjct: 394 LIHNYFSGLFECFGPRD---FSEVLANVKCCISEDMNAKLIEQVSVEEIKKAAFQLGSLK 453

Query: 64  APGEDGFPALFYQRYWEIVGKEVSSICLEVLNNGGSVEALNQTIIHKADIHPGARVVSLL 123
           APG DG+P  F+QRYW+ VG+EV        +NG  ++ LN+T I    + P       L
Sbjct: 454 APGPDGYPGFFFQRYWDKVGEEVCKAVQRFFSNGYMLKELNRTNI---VLIPKVTFPESL 513

Query: 124 TPGGLWNEGLVRSMFGENDAMAILGIPRPRMRQADKIMWHYENDGRYFVSSGYKLACGIR 183
              G+W   ++  +  + + +AI  +   + ++ D ++WH+  DG Y V SGY LA  ++
Sbjct: 514 -DRGIWRRDVLEEIVSQEEMLAITAMSISQFKRKDSLVWHHTRDGVYSVRSGYHLAVQMK 573

Query: 184 ---EEASSSNSEDVHKWWKFVWVCRIP 208
              +E+ SS+       W  +W   IP
Sbjct: 574 NKDQESPSSSFIPDKSLWDVIWKVDIP 593

[Close]

BLAST of Lcy11g017480 vs. NCBI nr
Match: KAA3489692.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 109.8 bits (273), Expect = 4.5e-20
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 8   YFRDLFSSNGSHNSGRLEEFLRNIALCVSMEANERLGRPYTEEDLVVSLKQMGPLKAPGE 67
           YF +LF++NG  N   L E L  +   +S+EANE L  P++E++++ +LK MGP KAPG 
Sbjct: 201 YFENLFNTNGVAN---LREVLEGVEESISVEANEDLLAPFSEDEVLTALKGMGPTKAPGP 260

Query: 68  DGFPALFYQRYWEIVGKEVSSICLEVLNNGGSVEALNQTII 109
           DGFPA+F+Q+YW IVGKEV   CL VLN G  V++ N T I
Sbjct: 261 DGFPAIFFQKYWHIVGKEVLGFCLGVLNEGKEVDSANMTNI 298

[Close]

BLAST of Lcy11g017480 vs. NCBI nr
Match: KAA3465749.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 109.0 bits (271), Expect = 7.7e-20
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 8   YFRDLFSSNGSHNSGRLEEFLRNIALCVSMEANERLGRPYTEEDLVVSLKQMGPLKAPGE 67
           YF  LF++NG  N     E L  I   +S+EANE L  P++E+++  +LK MGP+KAPG 
Sbjct: 271 YFEKLFNTNGVANP---REVLEGIEESISIEANEYLLAPFSEDEVKTTLKGMGPIKAPGP 330

Query: 68  DGFPALFYQRYWEIVGKEVSSICLEVLNNGGSVEALNQTII 109
           DGFPA+F+Q+YW IVGKEV   CL VLN G  V+++N T I
Sbjct: 331 DGFPAIFFQKYWHIVGKEVLGFCLRVLNEGKEVDSVNMTNI 368

[Close]

BLAST of Lcy11g017480 vs. NCBI nr
Match: KAA3485636.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-19
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 8   YFRDLFSSNGSHNSGRLEEFLRNIALCVSMEANERLGRPYTEEDLVVSLKQMGPLKAPGE 67
           +F  LFSS+G  +  R+   L  +  C+S E NE L  P+T ++++V+LK MGPLKAPG 
Sbjct: 217 FFEKLFSSDGVADPKRI---LEGVDSCISPEMNEVLNSPFTADEILVALKGMGPLKAPGS 276

Query: 68  DGFPALFYQRYWEIVGKEVSSICLEVLNNGGSVEALNQTII 109
           DGFPALF+Q+YW+IVGK+V   CL VLN+G  V + N T I
Sbjct: 277 DGFPALFFQKYWQIVGKDVLDFCLGVLNDGKEVVSANSTDI 314

[Close]

BLAST of Lcy11g017480 vs. NCBI nr
Match: KAA3468559.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-19
Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 8   YFRDLFSSNGSHNSGRLEEFLRNIALCVSMEANERLGRPYTEEDLVVSLKQMGPLKAPGE 67
           YF +LF+S+G  N     E L  I   +S+E N+RL  P+TEE+++++LK MGP KAPG 
Sbjct: 323 YFENLFTSHGITNP---SEILEGIERSISVEVNDRLQAPFTEEEVILALKGMGPTKAPGP 382

Query: 68  DGFPALFYQRYWEIVGKEVSSICLEVLNNGGSVEALNQT------IIHKADIHPGARVVS 125
           DGFP +F+Q+YW I+GKEV   CL VLN    V+ +N T       IHK       R +S
Sbjct: 383 DGFPTIFFQKYWHIMGKEVLGYCLGVLNEEREVDTVNTTNIVLIPKIHKPTSLVNFRPIS 442

The following BLAST results are available for this feature:

BLAST of Lcy11g017480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O00370	2.1e-04	36.36	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	[more]

BLAST of Lcy11g017480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803PR89	1.5e-24	32.34	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803QQP1	1.0e-22	27.97	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A5B6X8X5	2.2e-20	51.49	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_033272 PE=4 SV=1	[more]
A0A5B6V9D8	3.7e-20	51.49	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_000890 PE=4 SV=1	[more]
A0A5B6VH75	4.9e-20	45.53	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_014434 PE=4 SV=1	[more]

BLAST of Lcy11g017480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7134615.1	1.7e-22	30.92	hypothetical protein RHSIM_Rhsim08G0178900 [Rhododendron simsii]	[more]
KAA3489692.1	4.5e-20	51.49	reverse transcriptase [Gossypium australe]	[more]
KAA3465749.1	7.7e-20	51.49	reverse transcriptase [Gossypium australe]	[more]
KAA3485636.1	1.0e-19	51.49	reverse transcriptase [Gossypium australe]	[more]
KAA3468559.1	1.0e-19	45.53	reverse transcriptase [Gossypium australe]	[more]

BLAST of Lcy11g017480 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 211..271 e-value: 8.6E-7 score: 28.8
None	No IPR available	PANTHER	PTHR19446:SF440	SUBFAMILY NOT NAMED	coord: 2..108
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 2..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g017480.1	Lcy11g017480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity