Lcy11g017360 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g017360
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr11: 43128356 .. 43128853 (+)
RNA-Seq Expression	Lcy11g017360
Synteny	Lcy11g017360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCGGATGCTTCGTGGAACGATGATTGGAGAATTGGTGGTGTTGGTTGGATCGTTCGTGATTCTTCCGAATCTCTAATTCAGGCGGGTTACAAAAGAGTCAATCGCAAATGACAAATTAAATCCCTAGAAGCTTTAGCTATTCGAGAAGGGCTAAAAGCAATTAAATTGAAGGATCAGCCAAGGAACTTGCCGTTAATTGCTGAAGCAAATGCCCTCGAGGTTGTGAAAGTGCTGAATCATGAAATCCAAGACATCTCGGACACCAAAGTGATAGTCAACGAGGTGGAAGAGCTTGCGTTTGAGGTAGGAGTCATCTCTTTCTCAAAATGCCCTAGGGTGGGCAATCGAATTGCGCATTCACTCGCGCGAGCTGCGGCAGGGTTCATGCCGGAGCATCCTCTGTCGTCCGTCGAAGTCGACAGCAACGTCCATGGTTTTGGGTCAACTAGTTTTGGTCTTCCTTCCACGCTGGAAGAAGAATTTTTTTTGTAG

mRNA sequence

ATGAACTCGGATGCTTCGTGGAACGATGATTGGAGAATTGGTGGTGTTGGTTGGATCGTTCGTGATTCTTCCGAATCTCTAATTCAGGCGGAAGCTTTAGCTATTCGAGAAGGGCTAAAAGCAATTAAATTGAAGGATCAGCCAAGGAACTTGCCGTTAATTGCTGAAGCAAATGCCCTCGAGGTTGTGAAAGTGCTGAATCATGAAATCCAAGACATCTCGGACACCAAAGTGATAGTCAACGAGGTGGAAGAGCTTGCGTTTGAGGTAGGAGTCATCTCTTTCTCAAAATGCCCTAGGGTGGGCAATCGAATTGCGCATTCACTCGCGCGAGCTGCGGCAGGGTTCATGCCGGAGCATCCTCTGTCGTCCGTCGAAGTCGACAGCAACGTCCATGGTTTTGGGTCAACTAGTTTTGGTCTTCCTTCCACGCTGGAAGAAGAATTTTTTTTGTAG

Coding sequence (CDS)

ATGAACTCGGATGCTTCGTGGAACGATGATTGGAGAATTGGTGGTGTTGGTTGGATCGTTCGTGATTCTTCCGAATCTCTAATTCAGGCGGAAGCTTTAGCTATTCGAGAAGGGCTAAAAGCAATTAAATTGAAGGATCAGCCAAGGAACTTGCCGTTAATTGCTGAAGCAAATGCCCTCGAGGTTGTGAAAGTGCTGAATCATGAAATCCAAGACATCTCGGACACCAAAGTGATAGTCAACGAGGTGGAAGAGCTTGCGTTTGAGGTAGGAGTCATCTCTTTCTCAAAATGCCCTAGGGTGGGCAATCGAATTGCGCATTCACTCGCGCGAGCTGCGGCAGGGTTCATGCCGGAGCATCCTCTGTCGTCCGTCGAAGTCGACAGCAACGTCCATGGTTTTGGGTCAACTAGTTTTGGTCTTCCTTCCACGCTGGAAGAAGAATTTTTTTTGTAG

Protein sequence

MNSDASWNDDWRIGGVGWIVRDSSESLIQAEALAIREGLKAIKLKDQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRIAHSLARAAAGFMPEHPLSSVEVDSNVHGFGSTSFGLPSTLEEEFFL

Homology

[Close]

BLAST of Lcy11g017360 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.3e-09
Identity = 40/132 (30.30%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 1   MNSDASWNDDWRIGGVGWIVRDSSESLIQA--------------EALAIREGLKAIKLK- 60
           +N+DA+W  D   GG+GWI+RD    +I+A              E +AI EGL+AI+ + 
Sbjct: 89  LNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEH 148

Query: 61  ----DQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRV 114
                Q    P+  E+++LE + +L+ + QD ++   ++ E+ ++  ++ ++S     R 
Sbjct: 149 CRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISRE 208

[Close]

BLAST of Lcy11g017360 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.0e-09
Identity = 39/127 (30.71%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 1   MNSDASWNDDWRIGGVGWIVRDSSESLIQA--------------EALAIREGLKAIKLKD 60
           +N++A+W  D   GG+GWI+RD    +I+A              E +AI EGL+AI+   
Sbjct: 89  LNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIR--- 148

Query: 61  QPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRIA 114
           Q    P+  E+++LE + +L+ + QD ++   ++ E+ ++  ++ ++S     R  N++A
Sbjct: 149 QEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVA 208

[Close]

BLAST of Lcy11g017360 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 42/128 (32.81%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   MNSDASWNDDWRIGGVGWIVRDSSESLIQAEAL-AIREGLKAIKLKDQPRNLPLIAEANA 60
           +N DA+W D    GG+GWIVRDS    I AE L A+ + L           + +  E++ 
Sbjct: 88  LNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLKALSQSLTL------EAGIKIEMESDC 147

Query: 61  LEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRIAHSLARAAAGFMPE 120
           LEVV ++N     +++  +IV ++ +    + +  F   P   N +AH +AR A  F+ E
Sbjct: 148 LEVVNIINKSSMVLTEVSLIVEDIWKEMESLPIEGFKHLPMKANGVAHGIARRACVFV-E 207

Query: 121 HPLSSVEV 128
           H L  V V
Sbjct: 208 HVLPYVAV 208

[Close]

BLAST of Lcy11g017360 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 43/128 (33.59%), Postives = 67/128 (52.34%), Query Frame = 0


Query: 1   MNSDASWNDDWRIGGVGWIVRDSSESLIQA--------------EALAIREGLKAIKLKD 60
           +N+DASW+D    GG+GWI+R     ++ A              EA AI EGL+ +    
Sbjct: 81  LNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLG 140

Query: 61  QPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRIA 115
             R  PL  E ++ EV  +LN + +D++ T  +V E+  L     +++F+K  R  N  A
Sbjct: 141 VLR--PLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCA 200

[Close]

BLAST of Lcy11g017360 vs. ExPASy TrEMBL
Match: A0A803NRL8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05
Identity = 44/144 (30.56%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 1   MNSDASWNDDWRIGGVGWIVRDSSESLIQ--------------AEALAIREGLKAIKLKD 60
           +N DA+  +D R  G+G + RD    LI+              AEA+ ++E L  IKL+D
Sbjct: 222 INVDAALFEDERGFGIGAVARDDKGLLIEGVCKDFQGKVEPLLAEAIGVKEALSWIKLRD 281

Query: 61  QPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRIA 120
             +   ++ EA+ + VV+ L   +  +S    ++N+  +L FE+   S     R  N++A
Sbjct: 282 WQQ---VLVEADCMGVVQALRSSLDMVSLFGCVINDCNKLLFELRNASVFFVKRSANKVA 341

Query: 121 HSLARAAAGFMPEH--PLSSVEVD 129
           H+ A+A+  F P+   PL  V VD
Sbjct: 342 HAFAKASL-FYPDRIFPLEDVPVD 361

[Close]

BLAST of Lcy11g017360 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-08
Identity = 40/132 (30.30%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 1   MNSDASWNDDWRIGGVGWIVRDSSESLIQA--------------EALAIREGLKAIKLK- 60
           +N+DA+W  D   GG+GWI+RD    +I+A              E +AI EGL+AI+ + 
Sbjct: 89  LNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEH 148

Query: 61  ----DQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRV 114
                Q    P+  E+++LE + +L+ + QD ++   ++ E+ ++  ++ ++S     R 
Sbjct: 149 CRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISRE 208

[Close]

BLAST of Lcy11g017360 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-08
Identity = 39/127 (30.71%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 1   MNSDASWNDDWRIGGVGWIVRDSSESLIQA--------------EALAIREGLKAIKLKD 60
           +N++A+W  D   GG+GWI+RD    +I+A              E +AI EGL+AI+   
Sbjct: 89  LNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIR--- 148

Query: 61  QPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRIA 114
           Q    P+  E+++LE + +L+ + QD ++   ++ E+ ++  ++ ++S     R  N++A
Sbjct: 149 QEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVA 208

[Close]

BLAST of Lcy11g017360 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-07
Identity = 42/128 (32.81%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   MNSDASWNDDWRIGGVGWIVRDSSESLIQAEAL-AIREGLKAIKLKDQPRNLPLIAEANA 60
           +N DA+W D    GG+GWIVRDS    I AE L A+ + L           + +  E++ 
Sbjct: 88  LNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLKALSQSLTL------EAGIKIEMESDC 147

Query: 61  LEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRIAHSLARAAAGFMPE 120
           LEVV ++N     +++  +IV ++ +    + +  F   P   N +AH +AR A  F+ E
Sbjct: 148 LEVVNIINKSSMVLTEVSLIVEDIWKEMESLPIEGFKHLPMKANGVAHGIARRACVFV-E 207

Query: 121 HPLSSVEV 128
           H L  V V
Sbjct: 208 HVLPYVAV 208

[Close]

BLAST of Lcy11g017360 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-07
Identity = 43/128 (33.59%), Postives = 67/128 (52.34%), Query Frame = 0


Query: 1   MNSDASWNDDWRIGGVGWIVRDSSESLIQA--------------EALAIREGLKAIKLKD 60
           +N+DASW+D    GG+GWI+R     ++ A              EA AI EGL+ +    
Sbjct: 81  LNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLG 140

Query: 61  QPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRIA 115
             R  PL  E ++ EV  +LN + +D++ T  +V E+  L     +++F+K  R  N  A
Sbjct: 141 VLR--PLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCA 200

[Close]

BLAST of Lcy11g017360 vs. NCBI nr
Match: GAY45467.1 (hypothetical protein CUMW_089680 [Citrus unshiu])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-05
Identity = 34/113 (30.09%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 1   MNSDASWNDDWRIGGVGWIVRDSSESLIQAEALAIREGLKAIKLKDQPRNLPLIAEANAL 60
           +NSDA+ N+   + G+G +VR+S    + A   AI EG   IKL ++   +PL+ E+++L
Sbjct: 111 LNSDAATNEVDGLAGLGVVVRNSKGEFMDASTSAILEG---IKLVEELGLIPLVVESDSL 170

Query: 61  EVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRIAHSLARAA 114
            V+++++  I    +   ++ EV E  ++  V +     R  N  AH++A+ A
Sbjct: 171 NVIRLMSKRISSNLEIDWVITEVREFIYKNSVFAVKHISRSCNSAAHNVAKIA 220

[Close]

BLAST of Lcy11g017360 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 7.8e-05
Identity = 33/134 (24.63%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 2   NSDASWNDDWRIGGVGWIVRDSS--------------ESLIQAEALAIREGLKAIKLKDQ 61
           N+DA+WN D    G+GW++R+                +S+++AE  A+R  +  + L   
Sbjct: 431 NTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAV--LSLSRF 490

Query: 62  PRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRIAH 121
             N  +I E+++  ++++LN++ +     K  + +++ L  +   + F   PR GN +A 
Sbjct: 491 QYNY-VIFESDSQVLIEILNND-EIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAE 550

The following BLAST results are available for this feature:

BLAST of Lcy11g017360 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g017360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSV1	5.3e-09	30.30	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CP26	9.0e-09	30.71	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1D4B6	1.3e-07	32.81	uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DNV9	1.7e-07	33.59	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A803NRL8	2.7e-05	30.56	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Lcy11g017360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156777.1	1.1e-08	30.30	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143535.1	1.9e-08	30.71	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022148549.1	2.7e-07	32.81	uncharacterized protein LOC111017181 [Momordica charantia]	[more]
XP_022155262.1	3.5e-07	33.59	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
GAY45467.1	5.6e-05	30.09	hypothetical protein CUMW_089680 [Citrus unshiu]	[more]

BLAST of Lcy11g017360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	7.8e-05	24.63	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..113 e-value: 6.1E-8 score: 32.5
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..116 e-value: 2.4E-7 score: 32.8
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 2..111 e-value: 3.09174E-18 score: 73.5024
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g017360.1	Lcy11g017360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity