Lcy11g017250 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g017250
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	60S ribosomal protein L11
Location	Chr11: 42961413 .. 42966322 (-)
RNA-Seq Expression	Lcy11g017250
Synteny	Lcy11g017250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTCTCTAATCCCACCCGTTTCTCCCTCAGTCCCGATCTTCTTCTGACAGCAAGCTCAACAGCAGCATGTAGAAGTCATTTATGCGTCGCTCGGCTCGTGGGTCACCTTGGATTTGTGTGGGTCAGAGCGAACACCAAGCTTTTATCCCAATTTCTACCATTTCAAGGGAACTCGGCTGTGAGTAAGTGAGACAGAGCAAGGTCTAGTTAAATTAAAATGAAAACACACTGAAAAATTGTTGTGTACATTGAAACACACTCCTTTTCGATTCACTTTCGATTTCTTCAAAGCAACGTTGCCCCATCTACTCATTTTTCTTCATCAATTTCCTAGGTTTGAAGAAACATGCTGAATTTTTTCTCTCCTTCGAAGCAAGAAAAGGGCACTGAGCTTGAAAATTTGTCTCCCCTTCGAAGAAACCCGCATCAACGTCCCCTTCAACTTTAGGTAAATCCTCCTCTTGTTTTGGCCTTCACATCTTTGAGAACTTAAATGCATTGGAGTTTATTTTTTTTTTTTACTATTGTTGAACTTCATTGTCATTGTGAGTATATGACAACTTTGAAAAAGAATTCAAAGGTGTTTGCATATGTGATATTGTGGGTTTTTTACAGTTTTGAAAAAGAAAAAGTCAGTATCAATATCTTCCATAGGACTCTCACGGTGCGAACTAAGGGCAGCGACCGACGGAAACATTGACACGCTGATGTGTCATTGTGAGTATTGCATGAGTGAGATTTTTCATTTTGCTACATTGCCATAGCTTTCCCCTTTCATTAGTTATACTTCAATATCTTAATTTGCTTACTAATTTCCATGTGTTTTCGGTTAACTACTTCCCATTTTACTCATTCAAGACAGGGTTATGGAAGAAACGACCTCTGATTACTCAATTTGCCCACCTCAGATTATTGCTTTTATATGCCTAGTTTTCTTTTTTCCATGTTTACTCTTACTTTAACCTTGCAAATGTCCTCTCTTATGGATAAATGATTATGTGAAAAGCTTTATAAGTATTTAATTTAATATGGATTGGAGAAGAAAATGAACAAAAAGGAAATAAAAATCGCGTCTGATTAGGAGTTGGAAGTTGGGTGGGTAAATCTCTTCTGTCTATTACTTTAAAATTTGTATTGGGTCATGGAAAGAAAATAATAAAAGAAGGAGAAAACAGTGGAAGTTTTTTGAATTGAAGTCAAAAGAAGTGAGGATTCTTTTTTATTATTTTGTTCCAAAGTTAATGTATTGTGGTAGAAGATGTTTGGACTGATTTTCAGATGGATTGTTTTGTGGTCTTTCTTAATGATCTTTTTAGGATTTTAGGGGAATTTTGAGTGTGCTCAGATTTTCTCCACTTCCTTTTGCACCATGGTGATATGGGGTCTATGTTAAAAGATATACCTCGTTCTTGTGTTTTTTATGTAAAAAAACTAGTGAATAACTAGTCTGATTGACGACTCTGGCTATGTTTAACTTAACATACAATTGTTTTTTGCTTCTTCTATTGTTTGTTTAACTTTGCTCGCATTGTTTGTAGTTACTCTCTATTTGTAGTGTGTCGTACATTTGGCTTCATGTTAAATACAATTCTCCTTCCTAATACGAAATTTTTAACATTTGAAGGATGAACTTGGGACCTAGACTATTACTAATGGTATGTTTTCTTACTCTTATTTTTGCAATCTTTGTAGAACCCACTCTGCACTTAGTGCTCAAGCTTCTAGACAGTACTATTGAGTCATTTTTAATGTCATTGGATAGGAAGTACAGTGAGGATAAGATAATCTGCTACAAGTAAGCTTCAATATGCTAATTAATTGCAAAAAAAAAAAAAAAGTGTGTTATTCTTCTATATGAACTATGTTTGTTGTTTTCTTTTGCAATAACATTATATATGAAGTTGGACATGGTGGGTGGTTTTATCTTATTTCTAACATCAATTCTTCTAAATAGTTCAATGTCCTACTCTTGTTGATCAATTTCTTGTTCATAAAGAAGTCAAACTGCGAAATGACTTTAGAGTTTTACATCTTGTATTACAGCAGATTTTTAACTAATTTTTCCTATAACTTTTGGTCTGAAGTAATTCTTTTGTATAATAAACATTTAGAATCAAAACTAGTAACAATAAAAAGGGTATAAATTTTAAAAATACTTGGAACTCATTGGGTTATTATTAAGGAGTTTGATGTGAAATTTCTTCACTATATCCAAGCGACTCATCCCATTTTGGTTAAAAATGTTGTTGCTGATAGTTGATTTGAGTGTTCAAATTAAGTGAATTTACAAGCTCTGTTTTTCTGCTAAAGAATTTAGGACATAATAAAACATTTTAATGTTTTTTTTCTTATGAATTGAAAGTTGATAATGTCATCGCCAAATTATACTTTTACTTTCTTTTGTTTATTATTTGTAAGGTTTAAGTGATGGTGCTAGCTCTGTAATAAATAAGGGCTACTCCAACTCCACAATGGAAAACCTTGCTTGAACCTTGCCAAATCCCTAGAAGTATGTTTCCAGTTGATTCGAAACTAGATCTTTTATTTGTCATTATAACAAACAAATGGTATACTTTTTATTTGTGTTTCTTAACAATATTAAAGGGGAAGGAAAGGATTTTGTTACTACATCTTTTATTTTAACCTTCAATTTTAGGTAAGCAACTTTCGATCTTAATCTATCACTTTTACCATTGTCTAATTCTCTGAACAAAAGTCAAAAGATAAAGTTTGAGTCATCTTAAATATTTTAAGAAACTAAAGTGTTCAATGCTAATGCAAAGGAGCTTCAAGGCATTATATTTCTTGAAGTTTGTCTAGGACAATTGGAAACCTCTGAAATCCCTATCGTCCATATTCGAGCATATCTAATTGTAAGTTCAAAATTGTTTCCATTCAAGTCTTACTTTCCTTATAGTTTCATACATTTGCTTAGACTCTTATCATGTAGAAAAAAAAATGAAATCTTGTTGAAATCATGGTGAAATTTATTTCTTTCTAGGATGATATGTCTTCCTCTTTCTTTGATTATTTTAGGTGATGTCCTGAGCTGTTTTGTTGAGACTACTCAGGCTAGAGTTTGTGCTCTTCAGTTTCTTCCTCATTGCAAAAGAAATTCTAGTTAGAAAGATTTCAAAAGTTCTTTGACTGGTTTGATCACTTCAAGTCCGATAGTTTAAAAGTTTTTTCTTGGTGTTCTTTTTCAAAGCCTTTTGATGGATTTTCTTTTTAGAATATTTGTTTTCATTGAGATATTTTTCCCTTTTGTTTTCTTTGTTGTTCTTGTTTCACTCCCATGTGGAGTTTGTATCCTTTGAGCATTAGTCTCTTTTCATTTATTCAATGAAATGTTTTGTTTTTTGTTAAAAAAAAAAAAAAAAACTAAGATTCGTTCTTGATGGAAAATTTGATGAAGTGTCCATGGAGATGCTCTAACTTAGGAGTTGATGTGTCACTCATTTTGATGGATGTATGTGACCGTCATAAACTAATTTTGATAGGAGAATTTTATTTTCTTTGACAGTAGAATTTTGTTTTGACAACATTTCCATTTTAAGTAGTGAGTCAAGTGTCTTGAGCCTCAGTAACTTGTTCTTATTCCTTTGAAAAGAGTAAATCAGTTTCTTATTCTTTACCTATTAATTTTTTGACAAGATATTCTTTACATGTTAGTTCATAAAGATTTTAGTTTTCTTTCCTTGTATTTATGATTTTGATTGGTGGCCATTGAAGAATCATGTTGTCACCTAGATGGAAATATCAATTCTCTTACTTTTAATAAAATTGCTTGTGATTCAAAGTTAGAGTTATAGCCTTTGGTCAAAAAATAAATTGTAAATAGTTTTGAGAAATTTGTGTAAGCCTCATTGCATGATAAAGATTTTACAAAATTTTAAAGAGTGAGCTAGTAGTTATTGTAAATTGTTTTGAGAAATTTGCATAAGCCTCATTCCATATGTCCATTTACCATTTTACCCAAACTTACTTTGGAGTATTATTCAATTCTCTTTTGCATAAAGAAAATGTTGGGCGCAGCAGGAGGTGCAAGTCTCGCATCGGGATCCAGCACAAAGTCACAAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAAGGTGTGATTCTTAACAAGTTGTAGCAAATCGCTAGTTAAGCTCCAGAGGGATTTTCCCAAATAGTTTTGAAGTTATTTGCGTTCAATTCTTTGTCTTCTCCTAATGTTGTTCATTAGCTTTTCTTATCAACCATTCATGCAGAGCCCTAACTCCATTGTCTCCTTTACCGTGCGACAACATCGAATCTAAGAAGATCATCACTTGCGCCTACTAGCACTTGAAATTCTAGGTATTTGATTTAAGCACCCAATGGTGTATTTTTTTTCTTTCTTATAACCTTTCCTTTGTTTAAACTTTTCCTCTTCACTCAATGCTAACAACCAATGGTGTATTTTAGCAACCAATGCTAGCACTTTTTGGTTTGATTCACCCGTGATCTTCCCTTTGTTTTCTTTTTCTCTACTTTGATATTTACTCTTTAAGTGTTCTGGTTGCTTGTTCATTGATATAAGTGTTTTTGTTGTTTATATTTGTTTATTCTTAGGTACTTTAGTGGATGAAGTGGCTAATACTGTAGTAGTGGAGCTTGGTGAAACTCAACATGTTGTATACTTCTCCATATGTTGCAGGTATTTTTATTTAAAAAAGGTTTCATTTACAAGTGTAACATGCATAGCTGGAAATACAAGATTAAATTGTTAACTAATAGGAGAATTTAATAAGTTTTTTGTTTTATGCCTTTGTTGAATTTAATAGGTTTGTTCCCGATACTTCATTGATTCTCATCTTCACATCGAAACCTAATATATGTTGGACAACAGAATCTGCTAATGGAAAACCTTGTTAA

mRNA sequence

ATGTCTCTCTCTAATCCCACCCGTTTCTCCCTCAGTCCCGATCTTCTTCTGACAGCAAGCTCAACAGCAGCATGTAGAAGTCATTTATGCGTCGCTCGGCTCGTGGGTCACCTTGGATTTGTGTGGGTCAGAGCGAACACCAAGCTTTTATCCCAATTTCTACCATTTCAAGGGAACTCGGCTGTGAAACCCACTCTGCACTTAGTGCTCAAGCTTCTAGACAGTACTATTGAGTCATTTTTAATGTCATTGGATAGGAAGTACAGTGAGGATAAGATAATCTGCTACAAGAGGTGCAAGTCTCGCATCGGGATCCAGCACAAAGTCACAAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAAGGTACTTTAGTGGATGAAGTGGCTAATACTGTAGTAGTGGAGCTTGGTGAAACTCAACATGTTGTATACTTCTCCATATGTTGCAGGTTTGTTCCCGATACTTCATTGATTCTCATCTTCACATCGAAACCTAATATATGTTGGACAACAGAATCTGCTAATGGAAAACCTTGTTAA

Coding sequence (CDS)

ATGTCTCTCTCTAATCCCACCCGTTTCTCCCTCAGTCCCGATCTTCTTCTGACAGCAAGCTCAACAGCAGCATGTAGAAGTCATTTATGCGTCGCTCGGCTCGTGGGTCACCTTGGATTTGTGTGGGTCAGAGCGAACACCAAGCTTTTATCCCAATTTCTACCATTTCAAGGGAACTCGGCTGTGAAACCCACTCTGCACTTAGTGCTCAAGCTTCTAGACAGTACTATTGAGTCATTTTTAATGTCATTGGATAGGAAGTACAGTGAGGATAAGATAATCTGCTACAAGAGGTGCAAGTCTCGCATCGGGATCCAGCACAAAGTCACAAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAAGGTACTTTAGTGGATGAAGTGGCTAATACTGTAGTAGTGGAGCTTGGTGAAACTCAACATGTTGTATACTTCTCCATATGTTGCAGGTTTGTTCCCGATACTTCATTGATTCTCATCTTCACATCGAAACCTAATATATGTTGGACAACAGAATCTGCTAATGGAAAACCTTGTTAA

Protein sequence

MSLSNPTRFSLSPDLLLTASSTAACRSHLCVARLVGHLGFVWVRANTKLLSQFLPFQGNSAVKPTLHLVLKLLDSTIESFLMSLDRKYSEDKIICYKRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANTVVVELGETQHVVYFSICCRFVPDTSLILIFTSKPNICWTTESANGKPC

Homology

[Close]

BLAST of Lcy11g017250 vs. ExPASy Swiss-Prot
Match: A2YDY2 (60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-09
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEV-ANT 134
           +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  ANT
Sbjct: 144 RRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQANT 181

[Close]

BLAST of Lcy11g017250 vs. ExPASy Swiss-Prot
Match: Q0DK10 (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-09
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEV-ANT 134
           +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  ANT
Sbjct: 144 RRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQANT 181

[Close]

BLAST of Lcy11g017250 vs. ExPASy Swiss-Prot
Match: P42795 (60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-08
Identity = 24/36 (66.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN 133
           +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Sbjct: 144 RRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179

[Close]

BLAST of Lcy11g017250 vs. ExPASy Swiss-Prot
Match: P42794 (60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-08
Identity = 24/36 (66.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN 133
           +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Sbjct: 144 RRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179

[Close]

BLAST of Lcy11g017250 vs. ExPASy Swiss-Prot
Match: P46287 (60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-08
Identity = 23/33 (69.70%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDE 130
           +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++
Sbjct: 144 RRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176

[Close]

BLAST of Lcy11g017250 vs. ExPASy TrEMBL
Match: B4FGL9 (60S ribosomal protein L11-1 OS=Zea mays OX=4577 GN=100193878 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT 134
           +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  NT
Sbjct: 144 RRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQNT 180

[Close]

BLAST of Lcy11g017250 vs. ExPASy TrEMBL
Match: B6T3F4 (60S ribosomal protein L11-1 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT 134
           +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  NT
Sbjct: 144 RRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQNT 180

[Close]

BLAST of Lcy11g017250 vs. ExPASy TrEMBL
Match: A0A3L6DTL4 (60S ribosomal protein L11 OS=Zea mays OX=4577 GN=RPL11_5 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT 134
           +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  NT
Sbjct: 144 RRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQNT 180

[Close]

BLAST of Lcy11g017250 vs. ExPASy TrEMBL
Match: A0A218X0L8 (60S ribosomal protein L11-1 OS=Punica granatum OX=22663 GN=LOC116195605 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-07
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT 134
           +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  NT
Sbjct: 144 RRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNT 180

[Close]

BLAST of Lcy11g017250 vs. ExPASy TrEMBL
Match: A0A4S4CZ71 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_023651 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-07
Identity = 32/71 (45.07%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANTVVVELGETQHVVYFSICCRFVPD 156
           +RCKSR+GIQH+VTK+DAMKWFQVKYEG ++++  N     +G+  +++YF+I  R V  
Sbjct: 301 RRCKSRVGIQHRVTKDDAMKWFQVKYEGVILNKSQN-----IGD--YMIYFAIFKRSVSV 360

Query: 157 TSLILIFTSKP 168
            +++ +    P
Sbjct: 361 GTIMFVQMLNP 364

[Close]

BLAST of Lcy11g017250 vs. NCBI nr
Match: KAF3961778.1 (hypothetical protein CMV_013637 [Castanea mollissima])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-07
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN-TVVVELG 140
           +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  N TV+ ELG
Sbjct: 144 RRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITVLGELG 187

[Close]

BLAST of Lcy11g017250 vs. NCBI nr
Match: NP_001132427.1 (60S ribosomal protein L11-1 [Zea mays] >ACF81262.1 unknown [Zea mays] >AQK93235.1 60S ribosomal protein L11-1 [Zea mays] >AQK93236.1 60S ribosomal protein L11-1 [Zea mays] >PWZ11945.1 60S ribosomal protein L11 [Zea mays])

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-07
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT 134
           +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  NT
Sbjct: 144 RRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQNT 180

[Close]

BLAST of Lcy11g017250 vs. NCBI nr
Match: ACG31637.1 (60S ribosomal protein L11-1 [Zea mays])

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-07
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT 134
           +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  NT
Sbjct: 144 RRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQNT 180

[Close]

BLAST of Lcy11g017250 vs. NCBI nr
Match: GFP83875.1 (60S ribosomal protein l11-2 [Phtheirospermum japonicum])

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-07
Identity = 26/37 (70.27%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 96  YKRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN 133
           ++RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++ +N
Sbjct: 65  HRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKASN 101

[Close]

BLAST of Lcy11g017250 vs. NCBI nr
Match: THF95202.1 (hypothetical protein TEA_023651 [Camellia sinensis var. sinensis])

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-07
Identity = 32/71 (45.07%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANTVVVELGETQHVVYFSICCRFVPD 156
           +RCKSR+GIQH+VTK+DAMKWFQVKYEG ++++  N     +G+  +++YF+I  R V  
Sbjct: 301 RRCKSRVGIQHRVTKDDAMKWFQVKYEGVILNKSQN-----IGD--YMIYFAIFKRSVSV 360

Query: 157 TSLILIFTSKP 168
            +++ +    P
Sbjct: 361 GTIMFVQMLNP 364

[Close]

BLAST of Lcy11g017250 vs. TAIR 10
Match: AT2G42740.1 (ribosomal protein large subunit 16A )

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-10
Identity = 24/36 (66.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN 133
           +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Sbjct: 144 RRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179

[Close]

BLAST of Lcy11g017250 vs. TAIR 10
Match: AT3G58700.1 (Ribosomal L5P family protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-10
Identity = 24/36 (66.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN 133
           +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Sbjct: 144 RRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179

[Close]

BLAST of Lcy11g017250 vs. TAIR 10
Match: AT4G18730.1 (ribosomal protein L16B )

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-10
Identity = 24/36 (66.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN 133
           +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Sbjct: 144 RRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179

[Close]

BLAST of Lcy11g017250 vs. TAIR 10
Match: AT5G45775.1 (Ribosomal L5P family protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-10
Identity = 24/36 (66.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN 133
           +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Sbjct: 134 RRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 169

[Close]

BLAST of Lcy11g017250 vs. TAIR 10
Match: AT5G45775.2 (Ribosomal L5P family protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-10
Identity = 24/36 (66.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 97  KRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN 133
           +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Sbjct: 144 RRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179

The following BLAST results are available for this feature:

BLAST of Lcy11g017250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2YDY2	2.1e-09	73.68	60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 S...	[more]
Q0DK10	2.1e-09	73.68	60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2...	[more]
P42795	1.0e-08	66.67	60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2	[more]
P42794	1.0e-08	66.67	60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2	[more]
P46287	2.3e-08	69.70	60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1	[more]

BLAST of Lcy11g017250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B4FGL9	1.2e-07	72.97	60S ribosomal protein L11-1 OS=Zea mays OX=4577 GN=100193878 PE=2 SV=1	[more]
B6T3F4	1.2e-07	72.97	60S ribosomal protein L11-1 OS=Zea mays OX=4577 PE=2 SV=1	[more]
A0A3L6DTL4	1.2e-07	72.97	60S ribosomal protein L11 OS=Zea mays OX=4577 GN=RPL11_5 PE=3 SV=1	[more]
A0A218X0L8	2.0e-07	72.97	60S ribosomal protein L11-1 OS=Punica granatum OX=22663 GN=LOC116195605 PE=3 SV=...	[more]
A0A4S4CZ71	2.0e-07	45.07	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0236...	[more]

BLAST of Lcy11g017250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3961778.1	1.1e-07	70.45	hypothetical protein CMV_013637 [Castanea mollissima]	[more]
NP_001132427.1	2.5e-07	72.97	60S ribosomal protein L11-1 [Zea mays] >ACF81262.1 unknown [Zea mays] >AQK93235....	[more]
ACG31637.1	2.5e-07	72.97	60S ribosomal protein L11-1 [Zea mays]	[more]
GFP83875.1	3.2e-07	70.27	60S ribosomal protein l11-2 [Phtheirospermum japonicum]	[more]
THF95202.1	4.2e-07	45.07	hypothetical protein TEA_023651 [Camellia sinensis var. sinensis]	[more]

BLAST of Lcy11g017250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42740.1	7.4e-10	66.67	ribosomal protein large subunit 16A	[more]
AT3G58700.1	7.4e-10	66.67	Ribosomal L5P family protein	[more]
AT4G18730.1	7.4e-10	66.67	ribosomal protein L16B	[more]
AT5G45775.1	7.4e-10	66.67	Ribosomal L5P family protein	[more]
AT5G45775.2	7.4e-10	66.67	Ribosomal L5P family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022803	Ribosomal protein L5 domain superfamily	GENE3D	3.30.1440.10		coord: 67..130 e-value: 1.3E-5 score: 26.8
None	No IPR available	PANTHER	PTHR11994:SF28	OS01G0205500 PROTEIN	coord: 92..130
IPR002132	Ribosomal protein L5	PANTHER	PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	coord: 92..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g017250.1	Lcy11g017250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome